Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006611.1

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1821

Gene Structure 1821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006611.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 481 bp

gagaggaatatctaagttctataatggtaaatcaaagtctttcacgagcttagcagatgcgtcatctgtttctactgttaaggagcttgcgaagccagtaaatccttataacaagaagcgcaagaatctgttggccaatagttatttccgggatctgaagaatagtggtggtgggataaggagatcagctagctctagtcgaggcatatatcttgctggggagactcttagcggctctaacagtggggacgattccaagtctatttcaccttcacccttttcttgtcgtcctcctctacatccgcaccgtaaaagatcacctggtaatgggtcatcagattcttcaccgccttctcctcctcaacgaaatgctccttggcgatcattctcactgtctgatctacagtgcgccgctgcaccaacagccaacattactggctttgaaatttgtaacggggacatggacaacaatccacattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

16.97

Weight (kDa)

9.96

Isoelectric Point (pI)

66.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	109
AciI	CCGC	4 cut(s)	232, 303, 348, 412
AclWI	GGATC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	445
AcuI	CTGAAG	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	327
AgsI	TTSAA	1 cut(s)	444
AjnI	CCWGG	1 cut(s)	320
AjuI	GAANNNNNNNTTGG	4 cut(s)	129, 161, 359, 391
AluBI	AGCT	4 cut(s)	49, 86, 189, 193
AluI	AGCT	4 cut(s)	49, 86, 189, 193
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	160
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	414
ApoI	RAATTY	1 cut(s)	445
AspLEI	GCGC	2 cut(s)	121, 411
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	4 cut(s)	259, 265, 310, 337
AsuNHI	GCTAGC	1 cut(s)	189
BalI	TGGCCA	1 cut(s)	135
BauI	CACGAG	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	401
BciT130I	CCWGG	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	2 cut(s)	190, 196
BfmI	CTRYAG	1 cut(s)	402
BisI	GCNGC	3 cut(s)	233, 412, 415
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	3 cut(s)	234, 413, 416
Bme1390I	CCNGG	2 cut(s)	150, 322
BmrFI	CCNGG	2 cut(s)	150, 322
BmsI	GCATC	1 cut(s)	47
BmtI	GCTAGC	1 cut(s)	193
Bpu1102I	GCTNAGC	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse1I	ACTGG	2 cut(s)	96, 440
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseNI	ACTGG	2 cut(s)	96, 440
BseRI	GAGGAG	3 cut(s)	283, 346, 349
BseXI	GCAGC	1 cut(s)	401
BseYI	CCCAGC	1 cut(s)	216
BsgI	GTGCAG	1 cut(s)	400
BshFI	GGCC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	261, 471
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	216
BsmFI	GGGAC	2 cut(s)	261, 471
BsnI	GGCC	1 cut(s)	135
Bsp143I	GATC	5 cut(s)	152, 183, 315, 381, 398
Bsp1720I	GCTNAGC	1 cut(s)	50
BspACI	CCGC	4 cut(s)	232, 303, 348, 412
BspANI	GGCC	1 cut(s)	135
BspOI	GCTAGC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	160
BsrI	ACTGG	2 cut(s)	96, 440
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	5 cut(s)	152, 183, 315, 381, 398
BssSI	CACGAG	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	5 cut(s)	77, 243, 309, 394, 406
BstC8I	GCNNGC	2 cut(s)	88, 191
BstDEI	CTNAG	3 cut(s)	13, 50, 228
BstF5I	GGATG	1 cut(s)	299
BstHHI	GCGC	2 cut(s)	121, 411
BstKTI	GATC	5 cut(s)	155, 186, 318, 384, 401
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	5 cut(s)	152, 183, 315, 381, 398
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 423
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	148, 320
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	299
BtsIMutI	CAGTG	3 cut(s)	248, 390, 411
Cac8I	GCNNGC	2 cut(s)	88, 191
CfoI	GCGC	2 cut(s)	121, 411
CseI	GACGC	1 cut(s)	49
CsiI	ACCWGGT	1 cut(s)	320
CviAII	CATG	1 cut(s)	461
CviJI	RGCY	9 cut(s)	49, 86, 95, 135, 189, 193, 235, 426, 439
CviKI_1	RGCY	9 cut(s)	49, 86, 95, 135, 189, 193, 235, 426, 439
DdeI	CTNAG	3 cut(s)	13, 50, 228
DpnI	GATC	5 cut(s)	154, 185, 317, 383, 400
DpnII	GATC	5 cut(s)	152, 183, 315, 381, 398
EaeI	YGGCCR	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	1 cut(s)	464
FaiI	YATR	5 cut(s)	22, 109, 207, 209, 462
FaqI	GGGAC	2 cut(s)	261, 471
FatI	CATG	1 cut(s)	460
Fnu4HI	GCNGC	3 cut(s)	233, 412, 415
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	3 cut(s)	233, 412, 415
FspBI	CTAG	2 cut(s)	190, 196
GlaI	GCGC	2 cut(s)	120, 410
GluI	GCNGC	3 cut(s)	233, 412, 415
GsaI	CCCAGC	1 cut(s)	220
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	121, 411
Hin1II	CATG	1 cut(s)	464
Hin6I	GCGC	2 cut(s)	119, 409
HinP1I	GCGC	2 cut(s)	119, 409
HinfI	GANTC	4 cut(s)	125, 224, 252, 339
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	4 cut(s)	259, 265, 310, 337
Hpy188I	TCNGA	3 cut(s)	157, 338, 398
Hpy188III	TCNNGA	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	280, 361
HpyCH4III	ACNGT	5 cut(s)	77, 243, 309, 394, 406
HpyCH4V	TGCA	1 cut(s)	417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 423
HpyF3I	CTNAG	3 cut(s)	13, 50, 228
Hsp92II	CATG	1 cut(s)	464
HspAI	GCGC	2 cut(s)	119, 409
Kzo9I	GATC	5 cut(s)	152, 183, 315, 381, 398
LmnI	GCTCC	2 cut(s)	83, 377
LpnPI	CCDG	6 cut(s)	109, 162, 202, 307, 334, 421
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	1 cut(s)	47
MabI	ACCWGGT	1 cut(s)	320
MaeI	CTAG	2 cut(s)	190, 196
MaeIII	GTNAC	1 cut(s)	450
MalI	GATC	5 cut(s)	154, 185, 317, 383, 400
MboI	GATC	5 cut(s)	152, 183, 315, 381, 398
MboII	GAAGA	2 cut(s)	170, 334
MflI	RGATCY	1 cut(s)	152
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	1 cut(s)	445
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	5 cut(s)	195, 301, 304, 367, 370
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	2 cut(s)	79, 479
Msp20I	TGGCCA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	414
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	150, 322
MvaI	CCWGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	2 cut(s)	92, 423
NciI	CCSGG	1 cut(s)	150
NdeII	GATC	5 cut(s)	152, 183, 315, 381, 398
NheI	GCTAGC	1 cut(s)	189
NlaIII	CATG	1 cut(s)	464
PfeI	GAWTC	3 cut(s)	125, 252, 339
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	234, 413, 416
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PsiI	TTATAA	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	79, 479
SatI	GCNGC	3 cut(s)	233, 412, 415
Sau3AI	GATC	5 cut(s)	152, 183, 315, 381, 398
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	150, 322
SetI	ASST	6 cut(s)	51, 88, 191, 195, 272, 323
SexAI	ACCWGGT	1 cut(s)	320
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	1 cut(s)	402
Sse9I	AATT	1 cut(s)	445
SsiI	CCGC	4 cut(s)	232, 303, 348, 412
SspMI	CTAG	2 cut(s)	190, 196
StyD4I	CCNGG	2 cut(s)	148, 320
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	5 cut(s)	77, 243, 309, 394, 406
TaqI	TCGA	1 cut(s)	200
TasI	AATT	1 cut(s)	445
TauI	GCSGC	2 cut(s)	235, 414
TfiI	GAWTC	3 cut(s)	125, 252, 339
Tru1I	TTAA	2 cut(s)	79, 479
Tru9I	TTAA	2 cut(s)	79, 479
TscAI	CASTG	3 cut(s)	248, 397, 411
TseI	GCWGC	1 cut(s)	414
TspRI	CASTG	3 cut(s)	248, 397, 411
XapI	RAATTY	1 cut(s)	445
XspI	CTAG	2 cut(s)	190, 196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.