Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004406.1

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Reverse (-)

79368 .. 79814

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004406.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atgtctcagagtatcaccaagttgaggaagctaaaccgaactatggctcatcgcctgtccatgctgacgacacagagtatcaccaagttgaggaagctaaaccgaactatggctcatcgcctgtccatgctgacgacacaggtttcgcagttggtgaagatcgaacgcattgaaaccacggttgccaagatcgaccagtttgcaccttctaaacaagacaagagcaagcgctccgagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

80

Amino Acids

9.28

Weight (kDa)

11.59

Isoelectric Point (pI)

60.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfeI	AGCGCT	1 cut(s)	230
AfiI	CCNNNNNNNGG	4 cut(s)	24, 43, 90, 109
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	2 cut(s)	31, 97
AluI	AGCT	2 cut(s)	31, 97
Alw26I	GTCTC	1 cut(s)	9
Aor51HI	AGCGCT	1 cut(s)	230
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
AspLEI	GCGC	1 cut(s)	231
AsuHPI	GGTGA	3 cut(s)	7, 73, 166
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BcoDI	GTCTC	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 43, 90, 109
Bse1I	ACTGG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	177
BseLI	CCNNNNNNNGG	4 cut(s)	24, 43, 90, 109
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	196
BslI	CCNNNNNNNGG	4 cut(s)	24, 43, 90, 109
BsmAI	GTCTC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	159, 189
BspCNI	CTCAG	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	159, 189
Bst4CI	ACNGT	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	2 cut(s)	162, 192
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	159, 189
BtgI	CCRYGG	1 cut(s)	177
BtgZI	GCGATG	2 cut(s)	35, 101
Cac8I	GCNNGC	1 cut(s)	227
CfoI	GCGC	1 cut(s)	231
CviAII	CATG	2 cut(s)	61, 127
CviJI	RGCY	4 cut(s)	31, 47, 97, 113
CviKI_1	RGCY	4 cut(s)	31, 47, 97, 113
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	161, 191
DpnII	GATC	2 cut(s)	159, 189
Eco47III	AGCGCT	1 cut(s)	230
FaeI	CATG	2 cut(s)	64, 130
FaiI	YATR	4 cut(s)	44, 62, 110, 128
FatI	CATG	2 cut(s)	60, 126
GlaI	GCGC	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	232
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	64, 130
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HphI	GGTGA	3 cut(s)	7, 73, 166
Hpy188I	TCNGA	2 cut(s)	9, 235
HpyAV	CCTTC	1 cut(s)	216
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	1 cut(s)	203
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	64, 130
HspAI	GCGC	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	159, 189
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	4 cut(s)	68, 125, 134, 209
MalI	GATC	2 cut(s)	161, 191
MboI	GATC	2 cut(s)	159, 189
MboII	GAAGA	1 cut(s)	169
MnlI	CCTC	2 cut(s)	18, 84
NdeII	GATC	2 cut(s)	159, 189
NlaIII	CATG	2 cut(s)	64, 130
Sau3AI	GATC	2 cut(s)	159, 189
SetI	ASST	4 cut(s)	33, 99, 144, 208
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	162, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.