RchiOBHm_Chr1g0336271

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000728
Physical Location & Seq
Forward (+)
27947458 .. 27950209
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56423

Sequence Viewer

Length: 264 bp
ATGAAAATTACATCAAAAACAGCTAAACCCTATCTTTTCTCCATCGCGAGGCAGACATCTCTCTTTGCCATCATTATCATTATCATTCCACATCTCCTCCTTCTTCTTCTTCGGTGCCTGGTTCTCCATCCTCTTCTCTCATATCGCCTTCTTCTTCAGCTCGTCACTGTTGACGTCCTCCAATATCTGGATTCTCGCAGGCCTCGCCTCCTTCCTCGGCGCAGACTTTGGGTCTTCTGGGTTATGCTTCTTCTCTGCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

10.38

Weight (kDa)

11.45

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 114
AccB7I CCANNNNNTGG 1 cut(s) 187
AccII CGCG 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 140
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 48, 187
AhdI GACNNNNNGTC 1 cut(s) 230
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 2 cut(s) 23, 160
AluI AGCT 2 cut(s) 23, 160
AoxI GGCC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 222
BanI GGYRCC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 226
BccI CCATC 3 cut(s) 50, 77, 135
BciT130I CCWGG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 119
BmeRI GACNNNNNGTC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 187
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 2 cut(s) 48, 187
BseRI GAGGAG 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 1 cut(s) 202
BshNI GGYRCC 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 48, 187
BsnI GGCC 1 cut(s) 202
Bsp68I TCGCGA 1 cut(s) 47
BspANI GGCC 1 cut(s) 202
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 116
BspMAI CTGCAG 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 215
BssNI GRCGYC 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 200
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 47
BstHHI GCGC 1 cut(s) 222
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 256
BstUI CGCG 1 cut(s) 47
BstV2I GAAGAC 1 cut(s) 226
BsuRI GGCC 1 cut(s) 202
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 165
BtuMI TCGCGA 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 200
CfoI GCGC 1 cut(s) 222
CviJI RGCY 3 cut(s) 23, 160, 202
CviKI_1 RGCY 3 cut(s) 23, 160, 202
DriI GACNNNNNGTC 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 138
Eam1105I GACNNNNNGTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 138
Eco147I AGGCCT 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 117
FaiI YATR 2 cut(s) 142, 245
FokI GGATG 1 cut(s) 114
GlaI GCGC 1 cut(s) 221
HaeIII GGCC 1 cut(s) 202
HhaI GCGC 1 cut(s) 222
Hin1I GRCGYC 1 cut(s) 174
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 46, 188
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 3 cut(s) 110, 158, 221
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 174
HspAI GCGC 1 cut(s) 220
LpnPI CCDG 5 cut(s) 104, 131, 173, 184, 223
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 163
MboII GAAGA 8 cut(s) 95, 98, 101, 125, 143, 146, 226, 242
MluCI AATT 1 cut(s) 6
MnlI CCTC 7 cut(s) 42, 107, 141, 188, 213, 218, 225
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 204
NlaIV GGNNCC 1 cut(s) 116
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 163
NruI TCGCGA 1 cut(s) 47
PceI AGGCCT 1 cut(s) 202
PfeI GAWTC 1 cut(s) 191
PflMI CCANNNNNTGG 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 116
PstI CTGCAG 1 cut(s) 260
RruI TCGCGA 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 119
SetI ASST 3 cut(s) 25, 162, 177
SfcI CTRYAG 1 cut(s) 256
Sse9I AATT 1 cut(s) 6
SseBI AGGCCT 1 cut(s) 202
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 177
TasI AATT 1 cut(s) 6
TfiI GAWTC 1 cut(s) 191
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 172
Van91I CCANNNNNTGG 1 cut(s) 187
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.