Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015171

Physical Location & Seq

Genomic Coordinates Reverse (-)

17159044 .. 17161156

Gene Structure 2113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTTCAGAAACCAATACGACACAGATGTTACGACATGGAGTCCAACAGGTCGTTTATTCCAAGTGGAATACGCCATGGAAGCAGTGAAGCAAGGATCTGCAGCAATTGGACTCAGATCTCGTTCTCATGTCGTTCTCGCTTGTGTTAACAAAGCTCAATCGGAGCTTTCTTCGCATCAGAGGAAGATCTTTAAAGTCGATGACCATATCGGTGTTGCAATCGCTGGTCTCACAGCCGACGGTCGTGTATTGTCTCGGTATATGAGATCGGAATCGATTAATCACTCTTTTACTTATGAGTCTCCTCTTCCTGTTGGTCGTCTCGTTGTTCATCTTGCTGATAAAGCTCAGGTCTGTACCCAACGATCATGGAAACGACCCTATGGTGTTGGTTTGCTGGTAGGTGGATTGGATGAGTCTGGAGCCCACCTTTACTACAACTGTCCCAGCGGAAACTACTTCGAGTACCAAGCTTTTGCTATTGGATCCCGTTCCCAAGCAGCAAAGACCTATCTGGAACGCAGGTTTGAGAGCTTTGGGGATTCTTCTAGAGAAGATCTGATCAAAGATGCTATTTTGGCTGTTAGGGAGACATTGCAAGGGGAAACACTGAAGAGTTCTCTCTGCACAGTCGCTATTCTAGGAGTCGATGAACCGTTCCACTTCCTGGACCAGGAAGCAATACAGAAAGTGATCGACACATTTGAGAAAGTGCCAGAGGAAGAGGAAGGAGAAGGCGAGGCTGGTGAGGGTGAGGCCGAAGCTGCCGAGGCTGCACCAGCAGAACGAGGTGGTGGTGTTGCAGGTGACCAAGACGTGGCTCCAATGGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005886 GO:0005911 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0016020 GO:0019538 GO:0019773 GO:0030054 GO:0030163 GO:0032991 GO:0042221 GO:0043170 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046685 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 ko03050 map00220 map01100 map01110 map01130 map01230 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

278

Amino Acids

30.48

Weight (kDa)

4.99

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	6 - 28	8.7e-14	Proteasome subunit A N-terminal signature
Proteasome	PF00227	29 - 213	1.1e-55	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47250 AT5G42790
fragaria_vesca	FvH4_2g39570
malus_domestica	MD08G1028900.v1.1
prunus_persica	Prupe.1G376700_v2.0.a1
pyrus_communis	pycom08g02270 pycom15g02100
rosa_chinensis	RchiOBHm_Chr6g0301351
rosa_laevigata	RLG00000011258
rosa_roxburghii	Rroxscaffold_7G00166890
rosa_rugosa	Rorug06G0303900
rosa_samantha	Rh6AG417500 Rh6BG424200 Rh6CG431300 Rh6DG417200
rosa_wichuraiana	Rw6G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	794
Acc36I	ACCTGC	2 cut(s)	513, 794
AccB7I	CCANNNNNTGG	2 cut(s)	667, 817
AciI	CCGC	1 cut(s)	450
AclWI	GGATC	3 cut(s)	103, 480, 493
AcuI	CTGAAG	1 cut(s)	632
AfaI	GTAC	2 cut(s)	358, 467
AfiI	CCNNNNNNNGG	3 cut(s)	667, 673, 817
AhdI	GACNNNNNGTC	1 cut(s)	39
AjiI	CACGTC	1 cut(s)	817
AjnI	CCWGG	2 cut(s)	666, 672
AluBI	AGCT	6 cut(s)	155, 166, 347, 473, 534, 764
AluI	AGCT	6 cut(s)	155, 166, 347, 473, 534, 764
Alw26I	GTCTC	5 cut(s)	233, 258, 306, 326, 584
AlwI	GGATC	3 cut(s)	103, 480, 493
AoxI	GGCC	1 cut(s)	756
ApeKI	GCWGC	4 cut(s)	101, 500, 764, 773
AseI	ATTAAT	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	670
AsuHPI	GGTGA	3 cut(s)	758, 764, 818
AvaII	GGWCC	1 cut(s)	670
BamHI	GGATCC	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	427
BbvI	GCAGC	4 cut(s)	113, 512, 751, 760
BciT130I	CCWGG	2 cut(s)	668, 674
BclI	TGATCA	1 cut(s)	561
BcoDI	GTCTC	5 cut(s)	233, 258, 306, 326, 584
BfaI	CTAG	2 cut(s)	549, 641
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	2 cut(s)	513, 794
BglII	AGATCT	3 cut(s)	116, 186, 556
BisI	GCNGC	4 cut(s)	102, 501, 765, 774
BlsI	GCNGC	4 cut(s)	103, 502, 766, 775
Bme1390I	CCNGG	2 cut(s)	668, 674
Bme18I	GGWCC	1 cut(s)	670
BmeRI	GACNNNNNGTC	1 cut(s)	39
BmgBI	CACGTC	1 cut(s)	817
BmgT120I	GGNCC	1 cut(s)	670
BmiI	GGNNCC	3 cut(s)	424, 487, 822
BmrFI	CCNGG	2 cut(s)	668, 674
BmsI	GCATC	2 cut(s)	184, 559
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	348
Bsa29I	ATCGAT	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	271
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	75, 768
Bsc4I	CCNNNNNNNGG	3 cut(s)	667, 673, 817
Bse3DI	GCAATG	1 cut(s)	593
Bse8I	GATNNNNATC	1 cut(s)	271
BseBI	CCWGG	2 cut(s)	668, 674
BseCI	ATCGAT	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	75, 768
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	271
BseLI	CCNNNNNNNGG	3 cut(s)	667, 673, 817
BseMI	GCAATG	1 cut(s)	593
BseMII	CTCAG	2 cut(s)	127, 362
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	4 cut(s)	113, 512, 751, 760
BseYI	CCCAGC	1 cut(s)	446
BsgI	GTGCAG	2 cut(s)	610, 759
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	758
BshVI	ATCGAT	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	3 cut(s)	667, 673, 817
BsmAI	GTCTC	5 cut(s)	233, 258, 306, 326, 584
BsmBI	CGTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	758
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	9 cut(s)	95, 116, 186, 266, 365, 485, 556, 561, 693
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	1 cut(s)	450
BspANI	GGCC	1 cut(s)	758
BspCNI	CTCAG	2 cut(s)	126, 361
BspDI	ATCGAT	1 cut(s)	275
BspLI	GGNNCC	3 cut(s)	424, 487, 822
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	2 cut(s)	513, 794
BspPI	GGATC	3 cut(s)	103, 480, 493
BspTNI	GGTCTC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	593
BssECI	CCNNGG	2 cut(s)	75, 768
BssMI	GATC	9 cut(s)	95, 116, 186, 266, 365, 485, 556, 561, 693
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	668, 674
Bst4CI	ACNGT	4 cut(s)	242, 443, 631, 657
Bst6I	CTCTTC	3 cut(s)	312, 608, 717
BstDEI	CTNAG	2 cut(s)	113, 348
BstDSI	CCRYGG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	806
BstENI	CCTNNNNNAGG	1 cut(s)	671
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	9 cut(s)	98, 119, 189, 269, 368, 488, 559, 564, 696
BstMAI	GTCTC	5 cut(s)	233, 258, 306, 326, 584
BstMBI	GATC	9 cut(s)	95, 116, 186, 266, 365, 485, 556, 561, 693
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 172, 344, 578, 764, 770, 773, 779
BstNI	CCWGG	2 cut(s)	668, 674
BstPI	GGTNACC	1 cut(s)	806
BstSCI	CCNGG	2 cut(s)	666, 672
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	4 cut(s)	113, 512, 751, 760
BstX2I	RGATCY	5 cut(s)	95, 116, 186, 485, 556
BstYI	RGATCY	5 cut(s)	95, 116, 186, 485, 556
Bsu15I	ATCGAT	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	758
BsuTUI	ATCGAT	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	817
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	2 cut(s)	90, 608
BveI	ACCTGC	2 cut(s)	513, 794
Cfr13I	GGNCC	1 cut(s)	670
ClaI	ATCGAT	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	357, 466
CviAII	CATG	4 cut(s)	36, 76, 128, 369
CviQI	GTAC	2 cut(s)	357, 466
DdeI	CTNAG	2 cut(s)	113, 348
DpnI	GATC	9 cut(s)	97, 118, 188, 268, 367, 487, 558, 563, 695
DpnII	GATC	9 cut(s)	95, 116, 186, 266, 365, 485, 556, 561, 693
DraI	TTTAAA	1 cut(s)	193
DriI	GACNNNNNGTC	1 cut(s)	39
Eam1104I	CTCTTC	3 cut(s)	312, 608, 717
Eam1105I	GACNNNNNGTC	1 cut(s)	39
EarI	CTCTTC	3 cut(s)	312, 608, 717
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	427
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	670
Eco57I	CTGAAG	1 cut(s)	632
Eco91I	GGTNACC	1 cut(s)	806
EcoNI	CCTNNNNNAGG	1 cut(s)	671
EcoO65I	GGTNACC	1 cut(s)	806
EcoRII	CCWGG	2 cut(s)	666, 672
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	4 cut(s)	39, 79, 131, 372
FaiI	YATR	9 cut(s)	37, 77, 129, 207, 261, 263, 297, 370, 384
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	4 cut(s)	35, 75, 127, 368
FbaI	TGATCA	1 cut(s)	561
Fnu4HI	GCNGC	4 cut(s)	102, 501, 765, 774
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	4 cut(s)	102, 501, 765, 774
FspBI	CTAG	2 cut(s)	549, 641
GluI	GCNGC	4 cut(s)	102, 501, 765, 774
GsaI	CCCAGC	1 cut(s)	450
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	758
Hin1II	CATG	4 cut(s)	39, 79, 131, 372
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	7 cut(s)	40, 111, 272, 299, 416, 542, 645
HpaI	GTTAAC	1 cut(s)	148
HphI	GGTGA	3 cut(s)	758, 764, 818
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	6 cut(s)	8, 116, 163, 180, 271, 561
Hpy188III	TCNNGA	3 cut(s)	420, 515, 549
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	722, 728
HpyCH4III	ACNGT	4 cut(s)	242, 443, 631, 657
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	6 cut(s)	101, 218, 598, 627, 776, 803
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 172, 344, 578, 764, 770, 773, 779
HpyF3I	CTNAG	2 cut(s)	113, 348
HpySE526I	ACGT	1 cut(s)	816
Hsp92II	CATG	4 cut(s)	39, 79, 131, 372
Ksp22I	TGATCA	1 cut(s)	561
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	9 cut(s)	95, 116, 186, 266, 365, 485, 556, 561, 693
LmnI	GCTCC	3 cut(s)	163, 422, 826
Lsp1109I	GCAGC	4 cut(s)	113, 512, 751, 760
LweI	GCATC	2 cut(s)	184, 559
MaeI	CTAG	2 cut(s)	549, 641
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	2 cut(s)	28, 806
MalI	GATC	9 cut(s)	97, 118, 188, 268, 367, 487, 558, 563, 695
MboI	GATC	9 cut(s)	95, 116, 186, 266, 365, 485, 556, 561, 693
MboII	GAAGA	7 cut(s)	162, 196, 299, 537, 566, 625, 734
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	5 cut(s)	95, 116, 186, 485, 556
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	1 cut(s)	105
MlyI	GAGTC	5 cut(s)	49, 105, 308, 425, 654
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	9 cut(s)	174, 315, 712, 718, 733, 742, 748, 763, 782
MseI	TTAA	3 cut(s)	147, 192, 279
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	450
MspR9I	CCNGG	2 cut(s)	668, 674
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	2 cut(s)	668, 674
MwoI	GCNNNNNNNGC	8 cut(s)	80, 172, 344, 578, 764, 770, 773, 779
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	9 cut(s)	95, 116, 186, 266, 365, 485, 556, 561, 693
NlaIII	CATG	4 cut(s)	39, 79, 131, 372
NlaIV	GGNNCC	3 cut(s)	424, 487, 822
NmeAIII	GCCGAG	1 cut(s)	793
NmuCI	GTSAC	1 cut(s)	806
PaqCI	CACCTGC	1 cut(s)	794
PfeI	GAWTC	2 cut(s)	272, 542
PflMI	CCANNNNNTGG	2 cut(s)	667, 817
PfoI	TCCNGGA	1 cut(s)	666
PkrI	GCNGC	4 cut(s)	103, 502, 766, 775
PleI	GAGTC	5 cut(s)	48, 105, 307, 424, 653
PpsI	GAGTC	5 cut(s)	48, 105, 307, 424, 653
PshBI	ATTAAT	1 cut(s)	279
Psp6I	CCWGG	2 cut(s)	666, 672
PspEI	GGTNACC	1 cut(s)	806
PspFI	CCCAGC	1 cut(s)	446
PspGI	CCWGG	2 cut(s)	666, 672
PspN4I	GGNNCC	3 cut(s)	424, 487, 822
PspPI	GGNCC	1 cut(s)	670
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	5 cut(s)	95, 116, 186, 485, 556
RsaI	GTAC	2 cut(s)	358, 467
RsaNI	GTAC	2 cut(s)	357, 466
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	3 cut(s)	147, 192, 279
SatI	GCNGC	4 cut(s)	102, 501, 765, 774
Sau3AI	GATC	9 cut(s)	95, 116, 186, 266, 365, 485, 556, 561, 693
Sau96I	GGNCC	1 cut(s)	670
SchI	GAGTC	5 cut(s)	49, 105, 308, 425, 654
ScrFI	CCNGG	2 cut(s)	668, 674
SduI	GDGCHC	1 cut(s)	427
SfaNI	GCATC	2 cut(s)	184, 559
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	670
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	1 cut(s)	450
SspMI	CTAG	2 cut(s)	549, 641
StyD4I	CCNGG	2 cut(s)	666, 672
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	4 cut(s)	242, 443, 631, 657
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	5 cut(s)	198, 275, 462, 648, 696
TasI	AATT	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	272, 542
Tru1I	TTAA	3 cut(s)	147, 192, 279
Tru9I	TTAA	3 cut(s)	147, 192, 279
TscAI	CASTG	2 cut(s)	90, 615
TseFI	GTSAC	1 cut(s)	806
TseI	GCWGC	4 cut(s)	101, 500, 764, 773
Tsp45I	GTSAC	1 cut(s)	806
TspDTI	ATGAA	2 cut(s)	320, 666
TspRI	CASTG	2 cut(s)	90, 615
Van91I	CCANNNNNTGG	2 cut(s)	667, 817
VpaK11BI	GGWCC	1 cut(s)	670
VspI	ATTAAT	1 cut(s)	279
XagI	CCTNNNNNAGG	1 cut(s)	671
XbaI	TCTAGA	1 cut(s)	548
XspI	CTAG	2 cut(s)	549, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.