Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0015171

Physical Location & Seq

Genomic Coordinates Reverse (-)

64624063 .. 64627095

Gene Structure 3033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG424200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTTCAGGAACCAGTACGACACTGACGTCACTACATGGAGCCCCGCCGGGCGGCTCTTCCAGGTCGAGTACGCCATGGAGGCCGTGAAGCAAGGCTCGGCGGCGATTGGCCTCCGATCTAAGACCCACGTGGTCTTGGCCTGCGTCAACAAGGCCAACTCCGAGCTCTCTTCCCACCAGAAGAAGATTTTCAAGGTCGACGACCACATCGGCGTCGCCATTGCCGGACTCACCGCCGACGGCCGTGTTCTCTCGCGGTATATGCGATCCGAGTGCATCAACTACAACTATACTTATGAGTCGCCTCTGCCCGTCGGACGACTCGTCGTGCAGCTCGCCGATAAGGCGCAGGTTTGCACTCAACGCTCATGGAAACGACCATACGGTGTTGGACTTCTAGTAGGTGGGTTGGATGAATCTGGAGCTCATCTATATTACAACTGCCCAAGTGGAAACTACTTTGAATACCAGGCTTTTGCAATTGGATCTCGCTCACAAGCTGCAAAGACATACTTGGAACGCAGGTTTCAGAGCTTCACAGATTCTACACGGGAGGATCTGATCAAGGATGCACTCATTGCAACAAGGGAAACCTTGCAGGGGGAAAAACTCAGAAGTTCCATATGCACGGTTGCTGTGATGGGAGTTGGGGAGGCATTCCATATATTGGATCAGGACAATGTTCAGAAGCTGATTGATGCTTTCGAGATTGTGGGGCAGGATGAAGCTCCTGCTGCTGAACCTGATGCTGCTGTTCCGGCCGAGCAGGGTGCTCCTGCAGAAGGGGGTGCTGGTGCTGGAGCTGGAGCTGGAGCTGACGCGGGTGCTGCTCCTGAGGTTGATGTAGCTCCAATGGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005886 GO:0005911 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0016020 GO:0019538 GO:0019773 GO:0030054 GO:0030163 GO:0032991 GO:0042221 GO:0043170 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046685 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 ko03050 map00220 map01100 map01110 map01130 map01230 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

287

Amino Acids

30.86

Weight (kDa)

5.12

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	6 - 28	8.7e-14	Proteasome subunit A N-terminal signature
Proteasome	PF00227	29 - 213	6.8e-56	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47250 AT5G42790
fragaria_vesca	FvH4_2g39570
malus_domestica	MD08G1028900.v1.1
prunus_persica	Prupe.1G376700_v2.0.a1
pyrus_communis	pycom08g02270 pycom15g02100
rosa_chinensis	RchiOBHm_Chr6g0301351
rosa_laevigata	RLG00000011258
rosa_roxburghii	Rroxscaffold_7G00166890
rosa_rugosa	Rorug06G0303900
rosa_samantha	Rh6AG417500 Rh6BG424200 Rh6CG431300 Rh6DG417200
rosa_wichuraiana	Rw6G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
AatII	GACGTC	1 cut(s)	30
Acc36I	ACCTGC	2 cut(s)	340, 513
AccB7I	CCANNNNNTGG	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	2 cut(s)	256, 821
AciI	CCGC	6 cut(s)	45, 52, 101, 234, 256, 821
AclWI	GGATC	4 cut(s)	261, 493, 564, 678
AcoI	YGGCCR	2 cut(s)	241, 759
AcvI	CACGTG	1 cut(s)	130
AcyI	GRCGYC	2 cut(s)	27, 213
AfaI	GTAC	2 cut(s)	17, 71
AfiI	CCNNNNNNNGG	4 cut(s)	51, 600, 667, 782
AgsI	TTSAA	2 cut(s)	193, 464
AhdI	GACNNNNNGTC	1 cut(s)	323
AjnI	CCWGG	2 cut(s)	60, 468
Alw21I	GWGCWC	3 cut(s)	168, 427, 775
AlwI	GGATC	4 cut(s)	261, 493, 564, 678
AlwNI	CAGNNNCTG	1 cut(s)	691
AoxI	GGCC	6 cut(s)	81, 109, 138, 153, 241, 759
ApeKI	GCWGC	5 cut(s)	331, 500, 734, 749, 827
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	349
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	223
AxyI	CCTNAGG	1 cut(s)	834
BanII	GRGCYC	3 cut(s)	44, 168, 427
BbrPI	CACGTG	1 cut(s)	130
Bbv12I	GWGCWC	3 cut(s)	168, 427, 775
BbvI	GCAGC	5 cut(s)	343, 487, 721, 736, 814
BccI	CCATC	1 cut(s)	634
BceAI	ACGGC	3 cut(s)	68, 228, 256
BcgI	CGANNNNNNTGC	4 cut(s)	255, 289, 752, 786
BciT130I	CCWGG	2 cut(s)	62, 470
BclI	TGATCA	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	49
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	777
BfuAI	ACCTGC	2 cut(s)	340, 513
BglI	GCCNNNNNGGC	2 cut(s)	80, 344
BisI	GCNGC	7 cut(s)	53, 102, 332, 501, 735, 750, 828
BlsI	GCNGC	7 cut(s)	54, 103, 333, 502, 736, 751, 829
Bme1390I	CCNGG	3 cut(s)	49, 62, 470
BmeRI	GACNNNNNGTC	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	11, 41
BmrFI	CCNGG	3 cut(s)	49, 62, 470
BmsI	GCATC	4 cut(s)	285, 559, 688, 736
BpmI	CTGGAG	4 cut(s)	441, 819, 825, 831
BpuMI	CCSGG	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	130
BsaHI	GRCGYC	2 cut(s)	27, 213
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 600, 667, 782
Bse1I	ACTGG	1 cut(s)	13
Bse21I	CCTNAGG	1 cut(s)	834
Bse3DI	GCAATG	2 cut(s)	219, 576
BseBI	CCWGG	2 cut(s)	62, 470
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	3 cut(s)	418, 574, 727
BseLI	CCNNNNNNNGG	4 cut(s)	51, 600, 667, 782
BseMI	GCAATG	2 cut(s)	219, 576
BseMII	CTCAG	2 cut(s)	625, 825
BseNI	ACTGG	1 cut(s)	13
BseX3I	CGGCCG	2 cut(s)	241, 759
BseXI	GCAGC	5 cut(s)	343, 487, 721, 736, 814
BsgI	GTGCAG	1 cut(s)	350
Bsh1236I	CGCG	2 cut(s)	256, 821
Bsh1285I	CGRYCG	2 cut(s)	244, 762
BshFI	GGCC	6 cut(s)	83, 111, 140, 155, 243, 761
BsiEI	CGRYCG	2 cut(s)	244, 762
BsiHKAI	GWGCWC	3 cut(s)	168, 427, 775
BsiSI	CCGG	3 cut(s)	48, 225, 758
BslI	CCNNNNNNNGG	4 cut(s)	51, 600, 667, 782
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	6 cut(s)	83, 111, 140, 155, 243, 761
Bsp1286I	GDGCHC	4 cut(s)	44, 168, 427, 775
Bsp143I	GATC	6 cut(s)	116, 266, 485, 556, 561, 670
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	6 cut(s)	45, 52, 101, 234, 256, 821
BspANI	GGCC	6 cut(s)	83, 111, 140, 155, 243, 761
BspCNI	CTCAG	2 cut(s)	624, 826
BspFNI	CGCG	2 cut(s)	256, 821
BspLI	GGNNCC	2 cut(s)	11, 41
BspMAI	CTGCAG	1 cut(s)	781
BspMI	ACCTGC	2 cut(s)	340, 513
BspPI	GGATC	4 cut(s)	261, 493, 564, 678
BspQI	GCTCTTC	1 cut(s)	62
BsrDI	GCAATG	2 cut(s)	219, 576
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	6 cut(s)	116, 266, 485, 556, 561, 670
BssNI	GRCGYC	2 cut(s)	27, 213
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	62, 470
Bst4CI	ACNGT	2 cut(s)	386, 631
Bst6I	CTCTTC	2 cut(s)	62, 175
BstACI	GRCGYC	2 cut(s)	27, 213
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstBAI	YACGTR	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	142, 336
BstDEI	CTNAG	3 cut(s)	120, 611, 834
BstDSI	CCRYGG	1 cut(s)	75
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstF5I	GGATG	3 cut(s)	418, 574, 727
BstFNI	CGCG	2 cut(s)	256, 821
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	6 cut(s)	119, 269, 488, 559, 564, 673
BstMBI	GATC	6 cut(s)	116, 266, 485, 556, 561, 670
BstMCI	CGRYCG	2 cut(s)	244, 762
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 262, 344, 363, 578, 734, 758, 827
BstNI	CCWGG	2 cut(s)	62, 470
BstSCI	CCNGG	3 cut(s)	47, 60, 468
BstSFI	CTRYAG	1 cut(s)	777
BstUI	CGCG	2 cut(s)	256, 821
BstV1I	GCAGC	5 cut(s)	343, 487, 721, 736, 814
BstX2I	RGATCY	2 cut(s)	485, 556
BstYI	RGATCY	2 cut(s)	485, 556
BstZI	CGGCCG	2 cut(s)	241, 759
Bsu36I	CCTNAGG	1 cut(s)	834
BsuRI	GGCC	6 cut(s)	83, 111, 140, 155, 243, 761
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	418, 574, 727
BtsIMutI	CAGTG	1 cut(s)	21
BveI	ACCTGC	2 cut(s)	340, 513
Cac8I	GCNNGC	2 cut(s)	142, 336
CaiI	CAGNNNCTG	1 cut(s)	691
CfoI	GCGC	1 cut(s)	349
CseI	GACGC	3 cut(s)	133, 202, 827
Csp6I	GTAC	2 cut(s)	16, 70
CviAII	CATG	3 cut(s)	36, 76, 369
CviQI	GTAC	2 cut(s)	16, 70
DdeI	CTNAG	3 cut(s)	120, 611, 834
DpnI	GATC	6 cut(s)	118, 268, 487, 558, 563, 672
DpnII	GATC	6 cut(s)	116, 266, 485, 556, 561, 670
DrdI	GACNNNNNNGTC	1 cut(s)	26
DriI	GACNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	26
EaeI	YGGCCR	2 cut(s)	241, 759
EagI	CGGCCG	2 cut(s)	241, 759
Eam1104I	CTCTTC	2 cut(s)	62, 175
Eam1105I	GACNNNNNGTC	1 cut(s)	323
EarI	CTCTTC	2 cut(s)	62, 175
Ecl136II	GAGCTC	2 cut(s)	166, 425
EclXI	CGGCCG	2 cut(s)	241, 759
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	3 cut(s)	44, 168, 427
Eco52I	CGGCCG	2 cut(s)	241, 759
Eco53kI	GAGCTC	2 cut(s)	166, 425
Eco72I	CACGTG	1 cut(s)	130
Eco81I	CCTNAGG	1 cut(s)	834
EcoICRI	GAGCTC	2 cut(s)	166, 425
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoRII	CCWGG	2 cut(s)	60, 468
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	3 cut(s)	44, 168, 427
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	3 cut(s)	39, 79, 372
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FatI	CATG	3 cut(s)	35, 75, 368
FauI	CCCGC	2 cut(s)	52, 814
FauNDI	CATATG	1 cut(s)	623
FbaI	TGATCA	1 cut(s)	561
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	7 cut(s)	53, 102, 332, 501, 735, 750, 828
FokI	GGATG	3 cut(s)	425, 581, 734
FriOI	GRGCYC	3 cut(s)	44, 168, 427
Fsp4HI	GCNGC	7 cut(s)	53, 102, 332, 501, 735, 750, 828
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	7 cut(s)	53, 102, 332, 501, 735, 750, 828
GsuI	CTGGAG	4 cut(s)	441, 819, 825, 831
HaeIII	GGCC	6 cut(s)	83, 111, 140, 155, 243, 761
HapII	CCGG	3 cut(s)	48, 225, 758
HgaI	GACGC	3 cut(s)	133, 202, 827
HhaI	GCGC	1 cut(s)	349
Hin1I	GRCGYC	2 cut(s)	27, 213
Hin1II	CATG	3 cut(s)	39, 79, 372
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	2 cut(s)	148, 199
HindII	GTYRAC	2 cut(s)	148, 199
HinfI	GANTC	5 cut(s)	228, 299, 321, 416, 542
HpaII	CCGG	3 cut(s)	48, 225, 758
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	2 cut(s)	148, 199
Hpy188I	TCNGA	8 cut(s)	116, 163, 271, 317, 531, 561, 614, 687
Hpy188III	TCNNGA	5 cut(s)	7, 420, 674, 706, 833
Hpy8I	GTNNAC	2 cut(s)	148, 199
Hpy99I	CGWCG	5 cut(s)	203, 218, 242, 317, 329
HpyAV	CCTTC	1 cut(s)	776
HpyCH4III	ACNGT	2 cut(s)	386, 631
HpyCH4IV	ACGT	2 cut(s)	27, 129
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 262, 344, 363, 578, 734, 758, 827
HpyF3I	CTNAG	3 cut(s)	120, 611, 834
HpySE526I	ACGT	2 cut(s)	27, 129
Hsp92I	GRCGYC	2 cut(s)	27, 213
Hsp92II	CATG	3 cut(s)	39, 79, 372
HspAI	GCGC	1 cut(s)	347
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	6 cut(s)	116, 266, 485, 556, 561, 670
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	9 cut(s)	39, 422, 733, 778, 800, 806, 812, 835, 853
Lsp1109I	GCAGC	5 cut(s)	343, 487, 721, 736, 814
LweI	GCATC	4 cut(s)	285, 559, 688, 736
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	2 cut(s)	27, 129
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	6 cut(s)	118, 268, 487, 558, 563, 672
MboI	GATC	6 cut(s)	116, 266, 485, 556, 561, 670
MboII	GAAGA	4 cut(s)	49, 162, 193, 196
MfeI	CAATTG	1 cut(s)	480
MflI	RGATCY	2 cut(s)	485, 556
MhlI	GDGCHC	4 cut(s)	44, 168, 427, 775
MluCI	AATT	1 cut(s)	480
MlyI	GAGTC	3 cut(s)	222, 308, 315
MmeI	TCCRAC	3 cut(s)	295, 370, 390
MnlI	CCTC	6 cut(s)	73, 122, 315, 547, 646, 829
MroXI	GAANNNNTTC	1 cut(s)	188
MspI	CCGG	3 cut(s)	48, 225, 758
MspR9I	CCNGG	3 cut(s)	49, 62, 470
MunI	CAATTG	1 cut(s)	480
Mva1269I	GAATGC	1 cut(s)	656
MvaI	CCWGG	2 cut(s)	62, 470
MvnI	CGCG	2 cut(s)	256, 821
MwoI	GCNNNNNNNGC	8 cut(s)	80, 262, 344, 363, 578, 734, 758, 827
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	75
NdeI	CATATG	1 cut(s)	623
NdeII	GATC	6 cut(s)	116, 266, 485, 556, 561, 670
NlaIII	CATG	3 cut(s)	39, 79, 372
NlaIV	GGNNCC	2 cut(s)	11, 41
NmeAIII	GCCGAG	2 cut(s)	77, 787
NmuCI	GTSAC	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 321
PctI	GAATGC	1 cut(s)	656
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	416, 542
PflMI	CCANNNNNTGG	1 cut(s)	667
PkrI	GCNGC	7 cut(s)	54, 103, 333, 502, 736, 751, 829
PleI	GAGTC	3 cut(s)	222, 307, 315
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
PpsI	GAGTC	3 cut(s)	222, 307, 315
Ppu21I	YACGTR	1 cut(s)	130
Psp124BI	GAGCTC	2 cut(s)	168, 427
Psp6I	CCWGG	2 cut(s)	60, 468
PspCI	CACGTG	1 cut(s)	130
PspGI	CCWGG	2 cut(s)	60, 468
PspN4I	GGNNCC	2 cut(s)	11, 41
PstI	CTGCAG	1 cut(s)	781
PstNI	CAGNNNCTG	1 cut(s)	691
PsuI	RGATCY	2 cut(s)	485, 556
RsaI	GTAC	2 cut(s)	17, 71
RsaNI	GTAC	2 cut(s)	16, 70
SacI	GAGCTC	2 cut(s)	168, 427
SalI	GTCGAC	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	62
SatI	GCNGC	7 cut(s)	53, 102, 332, 501, 735, 750, 828
Sau3AI	GATC	6 cut(s)	116, 266, 485, 556, 561, 670
SchI	GAGTC	3 cut(s)	222, 308, 315
ScrFI	CCNGG	3 cut(s)	49, 62, 470
SduI	GDGCHC	4 cut(s)	44, 168, 427, 775
SfaNI	GCATC	4 cut(s)	285, 559, 688, 736
SfcI	CTRYAG	1 cut(s)	777
Sse9I	AATT	1 cut(s)	480
SsiI	CCGC	6 cut(s)	45, 52, 101, 234, 256, 821
SspMI	CTAG	1 cut(s)	398
SstI	GAGCTC	2 cut(s)	168, 427
StyD4I	CCNGG	3 cut(s)	47, 60, 468
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	386, 631
TaiI	ACGT	2 cut(s)	30, 132
TaqI	TCGA	3 cut(s)	66, 198, 705
TasI	AATT	1 cut(s)	480
TauI	GCSGC	2 cut(s)	55, 104
TfiI	GAWTC	2 cut(s)	416, 542
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	5 cut(s)	331, 500, 734, 749, 827
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	429, 738
TspRI	CASTG	1 cut(s)	28
Van91I	CCANNNNNTGG	1 cut(s)	667
XagI	CCTNNNNNAGG	1 cut(s)	780
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	1 cut(s)	398
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.