Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012857

Physical Location & Seq

Genomic Coordinates Reverse (-)

17319551 .. 17323484

Gene Structure 3934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G47260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGGAACCCTAGGACGAGCAATTTACACTGTGGGTAACTGGATTCGTGGAACTGGTCAAGCTCTTGATCGCGTTGGTTCTCTTCTTCAAGGAAGTCACCGTATCGAGGAACATCTGTCGAGGCATCGGACGTTGATGAATGTGTTTGATAAATCACCATTGGTGGATAAAGATGTGTTTGTGGCTCCGAGTGCTTCTGTTATTGGTGATGTTCAGATCGGAAAAGGCTCGTCGATTTGGTATGGCTGTGTTCTTCGAGGTGATGTGAATAACATCAGTGTTGGATCTGGGACGAATATCCAAGATAATACGCTTGTACATGTTGCAAAGACCAACATAAGTGGCAAGGTTCTACCTACTCTGATTGGGGACAATGTAACAGTAGGTCACAGTGCTGTCATTCATGGGTGTACTGTTGAGGATGATGCTTTTGTTGGTATGGGAGCAACACTACTTGATGGTGTGGTGGTTGAGAAACATGCCATGGTTGCTGCTGGTTCTCTTGTGAAACAGAACACGCGAATCCCTTCTGGAGAGGTGTGGGGAGGAAATCCAGCAAAGTTCATGAGAAAGTTAACAGATGAAGAGATAGTATACATCTCACAGTCAGCAAAGAATTACATCAATCTCGCACAGATTCACGCCTCAGAGAATTCAAAGTCATTTGAGCAGATCGAGGTTGAGAGAGCGCTTAGGAAGAAGTATGCACGCAAGGACGAGGATTACGATTCAATGCTTGGGATTACCCGTGAAACTCCACCGGAGTTGATTCTTCCCGACAATGTCTTACCAGGTGGTAAACCCGTCGCCAAGGTTCCGTCTACTCAGTACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009791 GO:0009853 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0016020 GO:0016043 GO:0016829 GO:0016835 GO:0016836 GO:0019222 GO:0019866 GO:0022414 GO:0022607 GO:0030964 GO:0031090 GO:0031323 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0042802 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051259 GO:0051260 GO:0061458 GO:0065003 GO:0065007 GO:0070206 GO:0070207 GO:0070469 GO:0071840 GO:0090567 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0099402 GO:1902494 GO:1990204 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

278

Amino Acids

30.06

Weight (kDa)

6.71

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hexapep	PF00132	57 - 87	8e-06	Bacterial transferase hexapeptide (six repeats)
LbH_EIF2B	PF25084	90 - 176	3e-06	EIF2B subunit epsilon LbH domain
Hexapep	PF00132	120 - 151	2.3e-06	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47260
fragaria_vesca	FvH4_2g39590
malus_domestica	MD08G1029100.v1.1 MD15G1024600.v1.1
prunus_persica	Prupe.1G376900_v2.0.a1 Prupe.1G376900_v2.0.a1
pyrus_communis	pycom08g02290 pycom15g02120
rosa_chinensis	RchiOBHm_Chr6g0301331
rosa_multiflora	Rmu_sc0003197.1_g000011 Rmu_sc0013354.1_g000021
rosa_roxburghii	Rroxscaffold_7G00166910
rosa_rugosa	Rorug06G0303700 Rorug07G0031300
rosa_samantha	Rh6BG423900 Rh6CG431100 Rh6DG417000
rosa_wichuraiana	Rw6G036110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	594, 821
AccII	CGCG	2 cut(s)	72, 520
AclWI	GGATC	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	652
AfaI	GTAC	3 cut(s)	318, 412, 830
AfeI	AGCGCT	1 cut(s)	690
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	3 cut(s)	89, 657, 732
AjnI	CCWGG	1 cut(s)	790
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
AlwI	GGATC	1 cut(s)	292
Aor51HI	AGCGCT	1 cut(s)	690
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	1 cut(s)	652
Asp700I	GAANNNNTTC	1 cut(s)	526
AspA2I	CCTAGG	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	691
AsuHPI	GGTGA	4 cut(s)	89, 147, 218, 272
AvrII	CCTAGG	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	1 cut(s)	452
BciT130I	CCWGG	1 cut(s)	792
BfaI	CTAG	1 cut(s)	11
BfoI	RGCGCY	1 cut(s)	692
BisI	GCNGC	1 cut(s)	492
BlnI	CCTAGG	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	493
BmcAI	AGTACT	1 cut(s)	830
Bme1390I	CCNGG	1 cut(s)	792
BmiI	GGNNCC	3 cut(s)	7, 186, 816
BmrFI	CCNGG	1 cut(s)	792
BmsI	GCATC	2 cut(s)	133, 415
BpmI	CTGGAG	1 cut(s)	552
Bpu10I	CCTNAGC	1 cut(s)	692
BsaJI	CCNNGG	3 cut(s)	10, 483, 810
BsaWI	WCCGGW	1 cut(s)	760
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	44, 58
BseBI	CCWGG	1 cut(s)	792
BseDI	CCNNGG	3 cut(s)	10, 483, 810
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	2 cut(s)	44, 58
BseXI	GCAGC	1 cut(s)	478
Bsh1236I	CGCG	2 cut(s)	72, 520
BsiSI	CCGG	1 cut(s)	761
BslFI	GGGAC	2 cut(s)	304, 383
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmFI	GGGAC	2 cut(s)	304, 383
Bsp1407I	TGTACA	1 cut(s)	316
Bsp143I	GATC	4 cut(s)	67, 216, 284, 672
Bsp19I	CCATGG	1 cut(s)	483
BspCNI	CTCAG	1 cut(s)	659
BspFNI	CGCG	2 cut(s)	72, 520
BspHI	TCATGA	1 cut(s)	564
BspLI	GGNNCC	3 cut(s)	7, 186, 816
BspPI	GGATC	1 cut(s)	292
BsrGI	TGTACA	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	44, 58
BssECI	CCNNGG	3 cut(s)	10, 483, 810
BssMI	GATC	4 cut(s)	67, 216, 284, 672
BssNAI	GTATAC	1 cut(s)	595
BssT1I	CCWWGG	3 cut(s)	10, 483, 810
Bst1107I	GTATAC	1 cut(s)	595
Bst2UI	CCWGG	1 cut(s)	792
Bst4CI	ACNGT	6 cut(s)	31, 101, 382, 392, 415, 606
Bst6I	CTCTTC	2 cut(s)	87, 579
BstAUI	TGTACA	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	709
BstDEI	CTNAG	3 cut(s)	646, 692, 825
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	2 cut(s)	72, 520
BstH2I	RGCGCY	1 cut(s)	692
BstHHI	GCGC	1 cut(s)	691
BstKTI	GATC	4 cut(s)	70, 219, 287, 675
BstMBI	GATC	4 cut(s)	67, 216, 284, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 488
BstNI	CCWGG	1 cut(s)	792
BstNSI	RCATGY	2 cut(s)	323, 482
BstSCI	CCNGG	1 cut(s)	790
BstUI	CGCG	2 cut(s)	72, 520
BstV1I	GCAGC	1 cut(s)	478
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BstZ17I	GTATAC	1 cut(s)	595
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	427
BtsIMutI	CAGTG	3 cut(s)	27, 283, 397
Cac8I	GCNNGC	1 cut(s)	709
CciI	TCATGA	1 cut(s)	564
CfoI	GCGC	1 cut(s)	691
CsiI	ACCWGGT	1 cut(s)	790
Csp6I	GTAC	3 cut(s)	317, 411, 829
CspCI	CAANNNNNGTGG	4 cut(s)	322, 357, 747, 782
CviAII	CATG	5 cut(s)	320, 404, 479, 484, 565
CviJI	RGCY	4 cut(s)	62, 185, 228, 246
CviKI_1	RGCY	4 cut(s)	62, 185, 228, 246
CviQI	GTAC	3 cut(s)	317, 411, 829
DdeI	CTNAG	3 cut(s)	646, 692, 825
DpnI	GATC	4 cut(s)	69, 218, 286, 674
DpnII	GATC	4 cut(s)	67, 216, 284, 672
Eam1104I	CTCTTC	2 cut(s)	87, 579
EarI	CTCTTC	2 cut(s)	87, 579
Eco130I	CCWWGG	3 cut(s)	10, 483, 810
Eco47III	AGCGCT	1 cut(s)	690
EcoRI	GAATTC	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	790
EcoT14I	CCWWGG	3 cut(s)	10, 483, 810
ErhI	CCWWGG	3 cut(s)	10, 483, 810
FaeI	CATG	5 cut(s)	323, 407, 482, 487, 568
FaqI	GGGAC	2 cut(s)	304, 383
FatI	CATG	5 cut(s)	319, 403, 478, 483, 564
FblI	GTMKAC	2 cut(s)	594, 821
Fnu4HI	GCNGC	1 cut(s)	492
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	492
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	690
GluI	GCNGC	1 cut(s)	492
GsuI	CTGGAG	1 cut(s)	552
HaeII	RGCGCY	1 cut(s)	692
HapII	CCGG	1 cut(s)	761
HhaI	GCGC	1 cut(s)	691
Hin1II	CATG	5 cut(s)	323, 407, 482, 487, 568
Hin6I	GCGC	1 cut(s)	689
HinP1I	GCGC	1 cut(s)	689
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	5 cut(s)	43, 522, 637, 728, 769
HpaI	GTTAAC	1 cut(s)	576
HpaII	CCGG	1 cut(s)	761
HphI	GGTGA	4 cut(s)	89, 147, 218, 272
Hpy166II	GTNNAC	5 cut(s)	411, 576, 595, 800, 822
Hpy188I	TCNGA	6 cut(s)	129, 189, 216, 221, 363, 649
Hpy188III	TCNNGA	4 cut(s)	65, 531, 565, 776
Hpy8I	GTNNAC	5 cut(s)	411, 576, 595, 800, 822
Hpy99I	CGWCG	2 cut(s)	235, 809
HpyAV	CCTTC	1 cut(s)	537
HpyCH4III	ACNGT	6 cut(s)	31, 101, 382, 392, 415, 606
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	326, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 488
HpyF3I	CTNAG	3 cut(s)	646, 692, 825
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	5 cut(s)	323, 407, 482, 487, 568
HspAI	GCGC	1 cut(s)	689
KspAI	GTTAAC	1 cut(s)	576
Kzo9I	GATC	4 cut(s)	67, 216, 284, 672
LmnI	GCTCC	2 cut(s)	190, 443
LpnPI	CCDG	9 cut(s)	25, 39, 273, 480, 516, 567, 774, 777, 804
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	2 cut(s)	133, 415
MabI	ACCWGGT	1 cut(s)	790
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	4 cut(s)	35, 95, 376, 386
MalI	GATC	4 cut(s)	69, 218, 286, 674
MboI	GATC	4 cut(s)	67, 216, 284, 672
MboII	GAAGA	6 cut(s)	74, 77, 245, 596, 709, 764
MflI	RGATCY	1 cut(s)	284
MluCI	AATT	3 cut(s)	21, 616, 652
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	9 cut(s)	100, 114, 251, 412, 529, 539, 655, 670, 712
MroXI	GAANNNNTTC	1 cut(s)	526
MseI	TTAA	1 cut(s)	575
MspI	CCGG	1 cut(s)	761
MspR9I	CCNGG	1 cut(s)	792
MvaI	CCWGG	1 cut(s)	792
MvnI	CGCG	2 cut(s)	72, 520
MwoI	GCNNNNNNNGC	2 cut(s)	191, 488
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	4 cut(s)	67, 216, 284, 672
NlaIII	CATG	5 cut(s)	323, 407, 482, 487, 568
NlaIV	GGNNCC	3 cut(s)	7, 186, 816
NmuCI	GTSAC	2 cut(s)	95, 386
NspI	RCATGY	2 cut(s)	323, 482
PagI	TCATGA	1 cut(s)	564
PciI	ACATGT	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	723
PdmI	GAANNNNTTC	1 cut(s)	526
PfeI	GAWTC	5 cut(s)	43, 522, 637, 728, 769
PflFI	GACNNNGTC	1 cut(s)	782
PkrI	GCNGC	1 cut(s)	493
PscI	ACATGT	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	790
PspGI	CCWGG	1 cut(s)	790
PspN4I	GGNNCC	3 cut(s)	7, 186, 816
PsuI	RGATCY	1 cut(s)	284
PsyI	GACNNNGTC	1 cut(s)	782
RsaI	GTAC	3 cut(s)	318, 412, 830
RsaNI	GTAC	3 cut(s)	317, 411, 829
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	1 cut(s)	492
Sau3AI	GATC	4 cut(s)	67, 216, 284, 672
ScaI	AGTACT	1 cut(s)	830
ScrFI	CCNGG	1 cut(s)	792
SexAI	ACCWGGT	1 cut(s)	790
SfaNI	GCATC	2 cut(s)	133, 415
Sse9I	AATT	3 cut(s)	21, 616, 652
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	790
StyI	CCWWGG	3 cut(s)	10, 483, 810
TaaI	ACNGT	6 cut(s)	31, 101, 382, 392, 415, 606
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	5 cut(s)	105, 119, 233, 256, 675
TasI	AATT	3 cut(s)	21, 616, 652
TatI	WGTACW	3 cut(s)	316, 410, 828
TfiI	GAWTC	5 cut(s)	43, 522, 637, 728, 769
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	3 cut(s)	34, 283, 397
TseFI	GTSAC	2 cut(s)	95, 386
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	2 cut(s)	95, 386
TspDTI	ATGAA	4 cut(s)	152, 392, 553, 597
TspGWI	ACGGA	1 cut(s)	807
TspRI	CASTG	3 cut(s)	34, 283, 397
Tth111I	GACNNNGTC	1 cut(s)	782
XapI	RAATTY	1 cut(s)	652
XceI	RCATGY	2 cut(s)	323, 482
XmaJI	CCTAGG	1 cut(s)	10
XmiI	GTMKAC	2 cut(s)	594, 821
XmnI	GAANNNNTTC	1 cut(s)	526
XspI	CTAG	1 cut(s)	11
ZrmI	AGTACT	1 cut(s)	830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.