Prupe.1G376900_v2.0.a1

Gamma carbonic anhydrase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012857
Physical Location & Seq
Reverse (-)
34141112 .. 34145378
4267 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G376900.2

Sequence Viewer

Length: 819 bp
ATGGGGACTTTAGGAAGAGTAATATACACCGTCGGATTCTGGATTAGGGAGACAGGTCAGGCAGTTGATCGCCTCGGCAGCCGCCTTCAAGGCAGCTACTACTTCAAAGAGCAGCTGTCTCGGCATCGGACTTTGATGAACATATTCGATAAAGCTCCTGTGGTTGACAAGGATGTATTTGTGGCCCCAAGTGCCTCTGTCATTGGCGATGTTCAAGTGGGAAGAGGGTCTTCTATTTGGTATGGATGTGTTTTGAGAGGTGATGTGAACAACATCGTTGTTGGATCTGGAACTAACATACAGGACAACTCCCTAGTCCATGTGGCTAAGTCTAATTTAAGTGGGAAGGTGTTACCAACCATTATTGGGGACAATGTTACTGTAGGTCACAGTGCTGTTATACATGGCTGTACTGTTGAGGATGAGGCCTTTGTTGGTATGGGAGCCACACTGCTTGATGGTGTTGTTGTTGAGAAACATGCCATGGTCGCTGCTGGAGCCCTGGTGAGACAGAATACAAGGATCCCCAGTGGAGAGGTATGGGGAGGTAATCCAGCAAAATTCCTGAGGAAGCTCACAGATGAGGAAAAAGCCTTCATCTCCCAGTCAGCCACCAATTATACCAACCTTGCACAAGTCCATGCAGCTGAGAATGGGAAGTCCTTTGATGAGATCGAGTTTGAGAAGGTCCTCCGCAAGAAGTTTGCTCGACGGGATGAGGAGTATGACTCAATGCTGGGTGTTGTTCGTGAAATTCCCCCAGAACTTATTCTTCCAGATAATGTATTACCAGATAAAGCATCAAAGGACCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hexapep

Protein Analysis

273

Amino Acids

29.66

Weight (kDa)

6.32

Isoelectric Point (pI)

31.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012857)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47260
fragaria_vesca FvH4_2g39590
malus_domestica MD08G1029100.v1.1 MD15G1024600.v1.1
prunus_persica Prupe.1G376900_v2.0.a1 Prupe.1G376900_v2.0.a1
pyrus_communis pycom08g02290 pycom15g02120
rosa_chinensis RchiOBHm_Chr6g0301331
rosa_multiflora Rmu_sc0003197.1_g000011 Rmu_sc0013354.1_g000021
rosa_roxburghii Rroxscaffold_7G00166910
rosa_rugosa Rorug06G0303700 Rorug07G0031300
rosa_samantha Rh6BG423900 Rh6CG431100 Rh6DG417000
rosa_wichuraiana Rw6G036110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 82, 694
AclWI GGATC 3 cut(s) 292, 517, 530
AcsI RAATTY 2 cut(s) 560, 753
AfaI GTAC 1 cut(s) 412
AfiI CCNNNNNNNGG 1 cut(s) 366
AgsI TTSAA 3 cut(s) 89, 106, 215
AjnI CCWGG 1 cut(s) 501
AluBI AGCT 5 cut(s) 96, 115, 155, 574, 647
AluI AGCT 5 cut(s) 96, 115, 155, 574, 647
Alw26I GTCTC 3 cut(s) 44, 123, 502
AlwI GGATC 3 cut(s) 292, 517, 530
AoxI GGCC 2 cut(s) 183, 426
ApeKI GCWGC 5 cut(s) 78, 93, 112, 491, 644
ApoI RAATTY 2 cut(s) 560, 753
Asp700I GAANNNNTTC 2 cut(s) 143, 768
AspS9I GGNCC 3 cut(s) 184, 688, 808
AsuHPI GGTGA 2 cut(s) 272, 517
AvaII GGWCC 2 cut(s) 688, 808
AxyI CCTNAGG 1 cut(s) 566
BamHI GGATCC 1 cut(s) 522
BanII GRGCYC 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 222
BbvI GCAGC 5 cut(s) 90, 105, 124, 478, 656
BccI CCATC 1 cut(s) 452
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 503
BcoDI GTCTC 3 cut(s) 44, 123, 502
BfaI CTAG 1 cut(s) 314
BfmI CTRYAG 1 cut(s) 381
BglI GCCNNNNNGGC 1 cut(s) 90
BisI GCNGC 6 cut(s) 79, 82, 94, 113, 492, 645
BlsI GCNGC 6 cut(s) 80, 83, 95, 114, 493, 646
Bme1390I CCNGG 1 cut(s) 503
Bme18I GGWCC 2 cut(s) 688, 808
BmgT120I GGNCC 3 cut(s) 184, 688, 808
BmiI GGNNCC 4 cut(s) 186, 445, 499, 524
BmrFI CCNGG 1 cut(s) 503
BmrI ACTGGG 2 cut(s) 522, 598
BmsI GCATC 2 cut(s) 133, 809
BmuI ACTGGG 2 cut(s) 522, 598
BpiI GAAGAC 1 cut(s) 222
BplI GAGNNNNNCTC 2 cut(s) 713, 745
BpmI CTGGAG 1 cut(s) 516
BsaJI CCNNGG 3 cut(s) 73, 483, 501
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse1I ACTGG 2 cut(s) 528, 604
Bse21I CCTNAGG 1 cut(s) 566
BseBI CCWGG 1 cut(s) 503
BseDI CCNNGG 3 cut(s) 73, 483, 501
BseGI GGATG 4 cut(s) 178, 251, 427, 721
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 557, 639
BseNI ACTGG 2 cut(s) 528, 604
BseRI GAGGAG 1 cut(s) 734
BseXI GCAGC 5 cut(s) 90, 105, 124, 478, 656
BseYI CCCAGC 1 cut(s) 736
BshFI GGCC 2 cut(s) 185, 428
BslFI GGGAC 2 cut(s) 19, 383
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 3 cut(s) 44, 123, 502
BsmFI GGGAC 2 cut(s) 19, 383
BsnI GGCC 2 cut(s) 185, 428
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 4 cut(s) 67, 284, 522, 672
Bsp19I CCATGG 1 cut(s) 483
BspACI CCGC 2 cut(s) 82, 694
BspANI GGCC 2 cut(s) 185, 428
BspCNI CTCAG 2 cut(s) 558, 640
BspLI GGNNCC 4 cut(s) 186, 445, 499, 524
BspPI GGATC 3 cut(s) 292, 517, 530
BsrI ACTGG 2 cut(s) 528, 604
BssECI CCNNGG 3 cut(s) 73, 483, 501
BssMI GATC 4 cut(s) 67, 284, 522, 672
BssT1I CCWWGG 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 4 cut(s) 31, 382, 392, 415
Bst6I CTCTTC 2 cut(s) 10, 217
BstDEI CTNAG 3 cut(s) 327, 566, 648
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 4 cut(s) 178, 251, 427, 721
BstKTI GATC 4 cut(s) 70, 287, 525, 675
BstMAI GTCTC 3 cut(s) 44, 123, 502
BstMBI GATC 4 cut(s) 67, 284, 522, 672
BstMWI GCNNNNNNNGC 6 cut(s) 78, 90, 121, 191, 488, 497
BstNI CCWGG 1 cut(s) 503
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 501
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 5 cut(s) 90, 105, 124, 478, 656
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 2 cut(s) 284, 522
BstYI RGATCY 2 cut(s) 284, 522
Bsu36I CCTNAGG 1 cut(s) 566
BsuRI GGCC 2 cut(s) 185, 428
BtgI CCRYGG 1 cut(s) 483
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 4 cut(s) 178, 251, 427, 721
BtsI GCAGTG 1 cut(s) 449
BtsIMutI CAGTG 3 cut(s) 397, 449, 535
Cfr13I GGNCC 3 cut(s) 184, 688, 808
Csp6I GTAC 1 cut(s) 411
CspCI CAANNNNNGTGG 2 cut(s) 436, 471
CviAII CATG 5 cut(s) 320, 404, 479, 484, 641
CviQI GTAC 1 cut(s) 411
DdeI CTNAG 3 cut(s) 327, 566, 648
DpnI GATC 4 cut(s) 69, 286, 524, 674
DpnII GATC 4 cut(s) 67, 284, 522, 672
Eam1104I CTCTTC 2 cut(s) 10, 217
EarI CTCTTC 2 cut(s) 10, 217
Eco130I CCWWGG 1 cut(s) 483
Eco147I AGGCCT 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 502
Eco47I GGWCC 2 cut(s) 688, 808
Eco81I CCTNAGG 1 cut(s) 566
EcoO109I RGGNCCY 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 501
EcoT14I CCWWGG 1 cut(s) 483
EcoT38I GRGCYC 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 5 cut(s) 323, 407, 482, 487, 644
FalI AAGNNNNNCTT 2 cut(s) 214, 246
FaqI GGGAC 2 cut(s) 19, 383
FatI CATG 5 cut(s) 319, 403, 478, 483, 640
Fnu4HI GCNGC 6 cut(s) 79, 82, 94, 113, 492, 645
FokI GGATG 4 cut(s) 185, 258, 434, 728
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 6 cut(s) 79, 82, 94, 113, 492, 645
FspBI CTAG 1 cut(s) 314
GluI GCNGC 6 cut(s) 79, 82, 94, 113, 492, 645
GsaI CCCAGC 1 cut(s) 740
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 2 cut(s) 185, 428
Hin1II CATG 5 cut(s) 323, 407, 482, 487, 644
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 2 cut(s) 36, 728
HphI GGTGA 2 cut(s) 272, 517
Hpy166II GTNNAC 2 cut(s) 166, 268
Hpy188I TCNGA 2 cut(s) 35, 129
Hpy188III TCNNGA 5 cut(s) 40, 288, 565, 749, 776
Hpy8I GTNNAC 2 cut(s) 166, 268
Hpy99I CGWCG 2 cut(s) 35, 714
HpyAV CCTTC 4 cut(s) 95, 340, 604, 679
HpyCH4III ACNGT 4 cut(s) 31, 382, 392, 415
HpyCH4V TGCA 2 cut(s) 632, 644
HpyF10VI GCNNNNNNNGC 6 cut(s) 78, 90, 121, 191, 488, 497
HpyF3I CTNAG 3 cut(s) 327, 566, 648
Hsp92II CATG 5 cut(s) 323, 407, 482, 487, 644
Kzo9I GATC 4 cut(s) 67, 284, 522, 672
LmnI GCTCC 3 cut(s) 160, 443, 497
Lsp1109I GCAGC 5 cut(s) 90, 105, 124, 478, 656
LweI GCATC 2 cut(s) 133, 809
MaeI CTAG 1 cut(s) 314
MaeIII GTNAC 3 cut(s) 351, 376, 386
MalI GATC 4 cut(s) 69, 286, 524, 674
MboI GATC 4 cut(s) 67, 284, 522, 672
MboII GAAGA 4 cut(s) 27, 222, 234, 764
MflI RGATCY 2 cut(s) 284, 522
MhlI GDGCHC 1 cut(s) 502
MluCI AATT 4 cut(s) 334, 560, 616, 753
MlyI GAGTC 1 cut(s) 722
MmeI TCCRAC 2 cut(s) 13, 262
MroXI GAANNNNTTC 2 cut(s) 143, 768
MseI TTAA 1 cut(s) 338
MspA1I CMGCKG 2 cut(s) 115, 647
MspR9I CCNGG 1 cut(s) 503
MvaI CCWGG 1 cut(s) 503
MwoI GCNNNNNNNGC 6 cut(s) 78, 90, 121, 191, 488, 497
NcoI CCATGG 1 cut(s) 483
NdeII GATC 4 cut(s) 67, 284, 522, 672
NlaIII CATG 5 cut(s) 323, 407, 482, 487, 644
NlaIV GGNNCC 4 cut(s) 186, 445, 499, 524
NmeAIII GCCGAG 2 cut(s) 54, 100
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 1 cut(s) 482
PceI AGGCCT 1 cut(s) 428
PdmI GAANNNNTTC 2 cut(s) 143, 768
PfeI GAWTC 1 cut(s) 36
PkrI GCNGC 6 cut(s) 80, 83, 95, 114, 493, 646
PleI GAGTC 1 cut(s) 722
PpsI GAGTC 1 cut(s) 722
PpuMI RGGWCCY 1 cut(s) 688
Psp5II RGGWCCY 1 cut(s) 688
Psp6I CCWGG 1 cut(s) 501
PspFI CCCAGC 1 cut(s) 736
PspGI CCWGG 1 cut(s) 501
PspN4I GGNNCC 4 cut(s) 186, 445, 499, 524
PspPI GGNCC 3 cut(s) 184, 688, 808
PspPPI RGGWCCY 1 cut(s) 688
PsuI RGATCY 2 cut(s) 284, 522
PvuII CAGCTG 2 cut(s) 115, 647
RsaI GTAC 1 cut(s) 412
RsaNI GTAC 1 cut(s) 411
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 6 cut(s) 79, 82, 94, 113, 492, 645
Sau3AI GATC 4 cut(s) 67, 284, 522, 672
Sau96I GGNCC 3 cut(s) 184, 688, 808
SchI GAGTC 1 cut(s) 722
ScrFI CCNGG 1 cut(s) 503
SduI GDGCHC 1 cut(s) 502
SfaNI GCATC 2 cut(s) 133, 809
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 2 cut(s) 688, 808
Sse9I AATT 4 cut(s) 334, 560, 616, 753
SseBI AGGCCT 1 cut(s) 428
SsiI CCGC 2 cut(s) 82, 694
SspMI CTAG 1 cut(s) 314
StuI AGGCCT 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 501
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 4 cut(s) 31, 382, 392, 415
TaqI TCGA 3 cut(s) 147, 675, 709
TasI AATT 4 cut(s) 334, 560, 616, 753
TatI WGTACW 1 cut(s) 410
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 3 cut(s) 397, 456, 535
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 5 cut(s) 78, 93, 112, 491, 644
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 152, 586
TspRI CASTG 3 cut(s) 397, 456, 535
VpaK11BI GGWCC 2 cut(s) 688, 808
XapI RAATTY 2 cut(s) 560, 753
XceI RCATGY 1 cut(s) 482
XmnI GAANNNNTTC 2 cut(s) 143, 768
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.