AT1G47813

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
17606558 .. 17606818
261 bp
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UTR
Exon/CDS
Intron
AT1G47813.1

Sequence Viewer

Length: 195 bp
ATGGAGATTGAGAGTCACGTTTCAGTCCCTGGGAAGAATCTAGTTAAAGTAGAGTTCAAGCTTGGGACAGAGAGCTACACTATTGATTCAATCAATGGTGATACTCATAATGTTCAAGATGATGATGTCCCTGACCAAATCTTGTCTAATGATGATGCTTCTCCTGTGAAACCACCCAAGAAGACAAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.03

Weight (kDa)

4.67

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013860)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 58, 90, 116
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 2 cut(s) 61, 75
AluI AGCT 2 cut(s) 61, 75
AlwNI CAGNNNCTG 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 30
BfaI CTAG 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 28, 29
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 28, 29
BslFI GGGAC 3 cut(s) 11, 79, 113
BsmFI GGGAC 3 cut(s) 11, 79, 113
BssECI CCNNGG 2 cut(s) 28, 29
Bst2UI CCWGG 1 cut(s) 30
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 188
CaiI CAGNNNCTG 1 cut(s) 29
CviJI RGCY 2 cut(s) 61, 75
CviKI_1 RGCY 2 cut(s) 61, 75
EcoRII CCWGG 1 cut(s) 28
FaiI YATR 1 cut(s) 108
FaqI GGGAC 3 cut(s) 11, 79, 113
FspBI CTAG 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 3 cut(s) 13, 37, 86
HphI GGTGA 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 18
LpnPI CCDG 4 cut(s) 15, 42, 144, 177
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 14
MboII GAAGA 2 cut(s) 46, 193
MlyI GAGTC 1 cut(s) 22
MseI TTAA 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 14
PasI CCCWGGG 1 cut(s) 29
PfeI GAWTC 2 cut(s) 37, 86
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 29
SaqAI TTAA 1 cut(s) 45
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 30
SetI ASST 3 cut(s) 21, 63, 77
SfaNI GCATC 1 cut(s) 145
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 28
TaiI ACGT 1 cut(s) 21
TfiI GAWTC 2 cut(s) 37, 86
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseFI GTSAC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 14
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.