Rroxscaffold_3G00218880

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
1099973 .. 1101305
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00218880.1

Sequence Viewer

Length: 279 bp
ATGGAGGTTCAAATCCAAGAATCGGTTGTTTGTAGGCCTCAGGTTAAGGTACAATTTCAGCTTGGTTCAGAAACATATTCTGTCAGCGGAAACAAGGGCATACTTTCTGAGCGACTGGTTTCAGTTAAAGAGGAGAGCATGGCCATATTGAAGGACTTCATCACCAAACACAATGTTCCTAATGATGTCCCTGATGAACCTGTTGAAGACTCTTCTGAAGATGATGGTGAAATTCTTGAGAAGCCTCAAGTCAAGTCAAAGAAGACAAAGCTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.29

Weight (kDa)

4.84

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013860)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 87
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 231
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 3 cut(s) 11, 151, 206
AluBI AGCT 2 cut(s) 61, 271
AluI AGCT 2 cut(s) 61, 271
AoxI GGCC 2 cut(s) 35, 141
ApoI RAATTY 1 cut(s) 231
Asp700I GAANNNNTTC 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 154, 239
AxyI CCTNAGG 1 cut(s) 39
BalI TGGCCA 1 cut(s) 143
BbsI GAAGAC 2 cut(s) 213, 269
BccI CCATC 1 cut(s) 218
BpiI GAAGAC 2 cut(s) 213, 269
BpuEI CTTGAG 2 cut(s) 231, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 120
Bse21I CCTNAGG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 2 cut(s) 53, 99
BseNI ACTGG 1 cut(s) 120
BseRI GAGGAG 1 cut(s) 146
BshFI GGCC 2 cut(s) 37, 143
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 2 cut(s) 37, 143
BspACI CCGC 1 cut(s) 87
BspANI GGCC 2 cut(s) 37, 143
BspCNI CTCAG 2 cut(s) 52, 100
BsrI ACTGG 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 217
BstDEI CTNAG 2 cut(s) 39, 108
BstV2I GAAGAC 2 cut(s) 213, 269
Bsu36I CCTNAGG 1 cut(s) 39
BsuRI GGCC 2 cut(s) 37, 143
Csp6I GTAC 1 cut(s) 50
CviAII CATG 1 cut(s) 139
CviJI RGCY 5 cut(s) 37, 61, 143, 244, 271
CviKI_1 RGCY 5 cut(s) 37, 61, 143, 244, 271
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 2 cut(s) 39, 108
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco147I AGGCCT 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 237
Eco81I CCTNAGG 1 cut(s) 39
FaeI CATG 1 cut(s) 142
FaiI YATR 4 cut(s) 76, 101, 140, 146
FaqI GGGAC 1 cut(s) 173
FatI CATG 1 cut(s) 138
HaeIII GGCC 2 cut(s) 37, 143
Hin1II CATG 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 2 cut(s) 20, 209
HphI GGTGA 2 cut(s) 154, 239
Hpy188I TCNGA 3 cut(s) 70, 109, 217
Hpy188III TCNNGA 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 145
HpyF3I CTNAG 2 cut(s) 39, 108
Hsp92II CATG 1 cut(s) 142
LpnPI CCDG 4 cut(s) 26, 101, 204, 213
MboII GAAGA 4 cut(s) 204, 218, 230, 274
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 2 cut(s) 53, 231
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 3 cut(s) 48, 124, 255
Mox20I TGGCCA 1 cut(s) 143
MroXI GAANNNNTTC 1 cut(s) 155
MscI TGGCCA 1 cut(s) 143
MseI TTAA 2 cut(s) 45, 126
Msp20I TGGCCA 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 87
NlaIII CATG 1 cut(s) 142
PceI AGGCCT 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 20
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SaqAI TTAA 2 cut(s) 45, 126
SchI GAGTC 1 cut(s) 203
SetI ASST 6 cut(s) 9, 45, 51, 63, 202, 273
SmlI CTYRAG 2 cut(s) 236, 246
SmoI CTYRAG 2 cut(s) 236, 246
Sse9I AATT 2 cut(s) 53, 231
SseBI AGGCCT 1 cut(s) 37
SsiI CCGC 1 cut(s) 87
StuI AGGCCT 1 cut(s) 37
TasI AATT 2 cut(s) 53, 231
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 45, 126
Tru9I TTAA 2 cut(s) 45, 126
TspDTI ATGAA 2 cut(s) 148, 210
XapI RAATTY 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.