RLG00000000561

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
1988617 .. 1989385
769 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000561

Sequence Viewer

Length: 315 bp
ATGAAAAACATGACAAGTTCATCGCAAGTAAATACGATGGAGGTTCAAATCCAAGAATCAGTTGTTTGTAGGCCTCAGGTTAAGGTACAATTTCAGCTTGGTTCAGAAACATATTCTGTCAGCGGAAACAAGGGCATACTTTCTGAGCAACTGGTTTCAGTTAAAGAGGAGAGCATGGCGATATTGAAGGACTTCATCACCAAACACAATGTTCCTAATGATGTCCCTGATGAACCTGTTGAAGACTCTTCTGAAGATGATGGTGAAATTCTTGAGAAGCCTCAGGTCAAGTCAAAGAAGACAAAGCTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.57

Weight (kDa)

4.84

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013860)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 123
AcsI RAATTY 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 1 cut(s) 87
AgsI TTSAA 3 cut(s) 47, 187, 242
AluBI AGCT 2 cut(s) 97, 307
AluI AGCT 2 cut(s) 97, 307
AoxI GGCC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 267
Asp700I GAANNNNTTC 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 190, 275
AxyI CCTNAGG 2 cut(s) 75, 282
BbsI GAAGAC 2 cut(s) 249, 305
BccI CCATC 2 cut(s) 31, 254
BpiI GAAGAC 2 cut(s) 249, 305
BpuEI CTTGAG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 156
Bse21I CCTNAGG 2 cut(s) 75, 282
BseMII CTCAG 3 cut(s) 89, 135, 296
BseNI ACTGG 1 cut(s) 156
BseRI GAGGAG 1 cut(s) 182
BshFI GGCC 1 cut(s) 73
BslFI GGGAC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 1 cut(s) 73
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 3 cut(s) 88, 136, 295
BsrI ACTGG 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 253
BstDEI CTNAG 3 cut(s) 75, 144, 282
BstV2I GAAGAC 2 cut(s) 249, 305
Bsu36I CCTNAGG 2 cut(s) 75, 282
BsuRI GGCC 1 cut(s) 73
BtgZI GCGATG 1 cut(s) 6
Csp6I GTAC 1 cut(s) 86
CviAII CATG 2 cut(s) 10, 175
CviJI RGCY 4 cut(s) 73, 97, 280, 307
CviKI_1 RGCY 4 cut(s) 73, 97, 280, 307
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 3 cut(s) 75, 144, 282
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
Eco147I AGGCCT 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 273
Eco81I CCTNAGG 2 cut(s) 75, 282
FaeI CATG 2 cut(s) 13, 178
FaiI YATR 4 cut(s) 11, 112, 137, 176
FaqI GGGAC 1 cut(s) 209
FatI CATG 2 cut(s) 9, 174
HaeIII GGCC 1 cut(s) 73
Hin1II CATG 2 cut(s) 13, 178
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 2 cut(s) 56, 245
HphI GGTGA 2 cut(s) 190, 275
Hpy188I TCNGA 3 cut(s) 106, 145, 253
Hpy188III TCNNGA 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 181
HpyF3I CTNAG 3 cut(s) 75, 144, 282
Hsp92II CATG 2 cut(s) 13, 178
LpnPI CCDG 5 cut(s) 62, 137, 240, 249, 269
MboII GAAGA 4 cut(s) 240, 254, 266, 310
MluCI AATT 2 cut(s) 89, 267
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 4 cut(s) 34, 84, 160, 291
MroXI GAANNNNTTC 1 cut(s) 191
MseI TTAA 2 cut(s) 81, 162
MspA1I CMGCKG 1 cut(s) 123
NlaIII CATG 2 cut(s) 13, 178
PceI AGGCCT 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 56
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SaqAI TTAA 2 cut(s) 81, 162
SchI GAGTC 1 cut(s) 239
SetI ASST 7 cut(s) 45, 81, 87, 99, 238, 288, 309
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 2 cut(s) 89, 267
SseBI AGGCCT 1 cut(s) 73
SsiI CCGC 1 cut(s) 123
StuI AGGCCT 1 cut(s) 73
TasI AATT 2 cut(s) 89, 267
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 2 cut(s) 81, 162
Tru9I TTAA 2 cut(s) 81, 162
TspDTI ATGAA 4 cut(s) 9, 17, 184, 246
XapI RAATTY 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.