Prupe.8G271600_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
22504128 .. 22506122
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G271600.1

Sequence Viewer

Length: 279 bp
ATGGAGGCTCAAATTCAAGAATCAGTTCCTTGTAGGCCTCAGGTCAAGGTGAAATTCCAGCTTGGTTCAGAAACATATTCTGTCAATCGAAACACGGGCATTCTTTCCGAACAAGTGGTTTCCGTTAAAGAAGAAAGCATGAACATATTGAAGGACTTCATCACCAGACATAATGTTCCTAATGACGTCACTGATGAACTTGTTGAAAACTCCTCGGAAGATGATGGTGAAATCCCTGAGAACCCTCCTGTCAAGTTAAAGAAGACTAAATTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.4

Weight (kDa)

4.82

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013860)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
AcsI RAATTY 3 cut(s) 12, 53, 269
AcyI GRCGYC 1 cut(s) 186
AgsI TTSAA 3 cut(s) 17, 151, 206
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
AoxI GGCC 1 cut(s) 35
ApoI RAATTY 3 cut(s) 12, 53, 269
Asp700I GAANNNNTTC 2 cut(s) 24, 155
AsuHPI GGTGA 3 cut(s) 61, 154, 239
AxyI CCTNAGG 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 269
BccI CCATC 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 213
Bse21I CCTNAGG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 53, 228
BseRI GAGGAG 1 cut(s) 202
BshFI GGCC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 99
BsnI GGCC 1 cut(s) 37
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 2 cut(s) 52, 229
BssECI CCNNGG 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 186
BstACI GRCGYC 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 39, 237
BstV2I GAAGAC 1 cut(s) 269
Bsu36I CCTNAGG 1 cut(s) 39
BsuRI GGCC 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 189
CviAII CATG 1 cut(s) 139
CviJI RGCY 3 cut(s) 8, 37, 61
CviKI_1 RGCY 3 cut(s) 8, 37, 61
DdeI CTNAG 2 cut(s) 39, 237
Eco147I AGGCCT 1 cut(s) 37
Eco81I CCTNAGG 1 cut(s) 39
FaeI CATG 1 cut(s) 142
FaiI YATR 4 cut(s) 76, 140, 146, 171
FatI CATG 1 cut(s) 138
HaeIII GGCC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 1 cut(s) 142
HinfI GANTC 1 cut(s) 20
HphI GGTGA 3 cut(s) 61, 154, 239
Hpy188I TCNGA 3 cut(s) 70, 109, 217
Hpy188III TCNNGA 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 186
HpyF3I CTNAG 2 cut(s) 39, 237
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 1 cut(s) 142
LpnPI CCDG 5 cut(s) 26, 71, 178, 249, 261
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 187
MboII GAAGA 3 cut(s) 143, 230, 274
MluCI AATT 3 cut(s) 12, 53, 269
MnlI CCTC 3 cut(s) 48, 223, 255
MroXI GAANNNNTTC 2 cut(s) 24, 155
MseI TTAA 2 cut(s) 126, 257
Mva1269I GAATGC 1 cut(s) 99
NlaIII CATG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 187
PceI AGGCCT 1 cut(s) 37
PctI GAATGC 1 cut(s) 99
PdmI GAANNNNTTC 2 cut(s) 24, 155
PfeI GAWTC 1 cut(s) 20
SaqAI TTAA 2 cut(s) 126, 257
SetI ASST 4 cut(s) 45, 51, 63, 189
Sse9I AATT 3 cut(s) 12, 53, 269
SseBI AGGCCT 1 cut(s) 37
StuI AGGCCT 1 cut(s) 37
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 88
TasI AATT 3 cut(s) 12, 53, 269
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 126, 257
Tru9I TTAA 2 cut(s) 126, 257
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 3 cut(s) 148, 155, 210
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 1 cut(s) 196
XapI RAATTY 3 cut(s) 12, 53, 269
XmnI GAANNNNTTC 2 cut(s) 24, 155
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.