FvH4_3g25590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013860
Physical Location & Seq
Reverse (-)
18495374 .. 18496678
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25590.t2

Sequence Viewer

Length: 273 bp
ATGATGGAGGTTCAGATCCAGGAATCAGTTGTTTGTAGCAGGCCTCAGGTTAAGGTACAATTTCAGCTTGGTTCAGAAACATATTCTGTCACCGGAAACAAGGGCATTCTTTTTGAGCAACTGGTTTTGGTTAAAGAGGAAAGCATGGCCATATTGAAGGACTTCATCACCAAACACAATGTTCCTAATGACGTCCCTGACGAACTTGTTGAAGAGTCTTCTGAAGATGATGGTGAAATTCTTGAGAAGCCAAAGAAGACGAAGCTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.17

Weight (kDa)

4.61

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47813
fragaria_vesca FvH4_3g25590 FvH4_3g25590 FvH4_3g25590
malus_domestica MD03G1295800.v1.1
prunus_persica Prupe.8G271600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0241611
rosa_laevigata RLG00000000561
rosa_multiflora Rmu_sc0014556.1_g000003
rosa_roxburghii Rroxscaffold_3G00218880
rosa_samantha Rh2BG480100 Rh2DG489000 Rh7AG500100 Rh7BG471200 Rh7CG516600 Rh7DG485100
rosa_wichuraiana Rw7G042240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
AclWI GGATC 1 cut(s) 10
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 237
AcuI CTGAAG 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 57
AgsI TTSAA 2 cut(s) 157, 212
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 2 cut(s) 67, 265
AluI AGCT 2 cut(s) 67, 265
AlwI GGATC 1 cut(s) 10
AoxI GGCC 2 cut(s) 41, 147
ApoI RAATTY 1 cut(s) 237
Asp700I GAANNNNTTC 1 cut(s) 161
AsuHPI GGTGA 3 cut(s) 82, 160, 245
AxyI CCTNAGG 1 cut(s) 45
BalI TGGCCA 1 cut(s) 149
BbsI GAAGAC 2 cut(s) 210, 263
BccI CCATC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 20
BpiI GAAGAC 2 cut(s) 210, 263
BpuEI CTTGAG 1 cut(s) 263
BsaHI GRCGYC 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 126
Bse21I CCTNAGG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 126
BshFI GGCC 2 cut(s) 43, 149
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 2 cut(s) 43, 149
Bsp143I GATC 1 cut(s) 15
BspANI GGCC 2 cut(s) 43, 149
BspCNI CTCAG 1 cut(s) 58
BspPI GGATC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 126
BssMI GATC 1 cut(s) 15
BssNI GRCGYC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 45
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstV2I GAAGAC 2 cut(s) 210, 263
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
Bsu36I CCTNAGG 1 cut(s) 45
BsuRI GGCC 2 cut(s) 43, 149
Cac8I GCNNGC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 56
CviAII CATG 1 cut(s) 145
CviJI RGCY 5 cut(s) 43, 67, 149, 250, 265
CviKI_1 RGCY 5 cut(s) 43, 67, 149, 250, 265
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 1 cut(s) 45
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco147I AGGCCT 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 243
Eco81I CCTNAGG 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 148
FaiI YATR 3 cut(s) 82, 146, 152
FaqI GGGAC 1 cut(s) 179
FatI CATG 1 cut(s) 144
HaeIII GGCC 2 cut(s) 43, 149
HapII CCGG 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 1 cut(s) 148
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 2 cut(s) 23, 215
HpaII CCGG 1 cut(s) 93
HphI GGTGA 3 cut(s) 82, 160, 245
Hpy188I TCNGA 3 cut(s) 15, 76, 223
Hpy188III TCNNGA 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 192
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 1 cut(s) 148
Kzo9I GATC 1 cut(s) 15
LpnPI CCDG 7 cut(s) 5, 25, 32, 32, 106, 107, 210
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 4 cut(s) 210, 224, 236, 268
MflI RGATCY 1 cut(s) 15
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 2 cut(s) 59, 237
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 2 cut(s) 54, 130
Mox20I TGGCCA 1 cut(s) 149
MroXI GAANNNNTTC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 149
MseI TTAA 2 cut(s) 51, 132
Msp20I TGGCCA 1 cut(s) 149
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 1 cut(s) 20
NdeII GATC 1 cut(s) 15
NlaIII CATG 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 88
PceI AGGCCT 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 23
PfoI TCCNGGA 1 cut(s) 18
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PsuI RGATCY 1 cut(s) 15
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
SaqAI TTAA 2 cut(s) 51, 132
Sau3AI GATC 1 cut(s) 15
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 20
SetI ASST 6 cut(s) 12, 51, 57, 69, 195, 267
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 2 cut(s) 59, 237
SseBI AGGCCT 1 cut(s) 43
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 1 cut(s) 18
TaiI ACGT 1 cut(s) 195
TasI AATT 2 cut(s) 59, 237
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 51, 132
Tru9I TTAA 2 cut(s) 51, 132
TseFI GTSAC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 154
XapI RAATTY 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 161
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.