Rmu_sc0014556.1_g000003

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014556.1
Physical Location & Seq
Reverse (-)
7074 .. 9477
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014556.1_g000003.1.cds

Sequence Viewer

Length: 345 bp
atgccagaaatggatgggttcgaagcgaccagggaaatcaggaaagaggagaaatcttacaatgttcgcattccgatcatcgcattaacagctcatgcaaaaggaggcgaggaaacaagaaggatgatggaggctgaaacatattctgtcagcggaaacaagggcatactttctgagcaactggtttcagttaaagaggagagcatggccatattgaaggacttcatcaccaaacacaatgttcctaatgatgtccctgatgaacctgttgaagactcttctgaagatgatggtgaacttcttgagaagcctcaagtcaagtcaaagaagacaaagcttacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.82

Weight (kDa)

4.92

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013860)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 153
AcoI YGGCCR 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 303
AgsI TTSAA 2 cut(s) 217, 272
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 2 cut(s) 92, 337
AluI AGCT 2 cut(s) 92, 337
AoxI GGCC 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 220, 305
AsuII TTCGAA 1 cut(s) 21
BalI TGGCCA 1 cut(s) 209
BbsI GAAGAC 2 cut(s) 279, 335
BccI CCATC 3 cut(s) 8, 121, 284
BciT130I CCWGG 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 31
BpiI GAAGAC 2 cut(s) 279, 335
Bpu14I TTCGAA 1 cut(s) 21
BpuEI CTTGAG 2 cut(s) 297, 323
BsaJI CCNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 19, 129
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 2 cut(s) 62, 212
BshFI GGCC 1 cut(s) 209
BslFI GGGAC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 69
BsnI GGCC 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 21
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 1 cut(s) 153
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 166
BspT104I TTCGAA 1 cut(s) 21
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 283
BstBI TTCGAA 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 2 cut(s) 19, 129
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BstV2I GAAGAC 2 cut(s) 279, 335
BsuRI GGCC 1 cut(s) 209
BtgZI GCGATG 1 cut(s) 64
BtsCI GGATG 2 cut(s) 19, 129
CviAII CATG 2 cut(s) 95, 205
CviJI RGCY 5 cut(s) 92, 134, 209, 310, 337
CviKI_1 RGCY 5 cut(s) 92, 134, 209, 310, 337
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 29
FaeI CATG 2 cut(s) 98, 208
FaiI YATR 5 cut(s) 96, 142, 167, 206, 212
FaqI GGGAC 1 cut(s) 239
FatI CATG 2 cut(s) 94, 204
FokI GGATG 2 cut(s) 26, 136
HaeIII GGCC 1 cut(s) 209
Hin1II CATG 2 cut(s) 98, 208
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 1 cut(s) 275
HphI GGTGA 2 cut(s) 220, 305
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 3 cut(s) 75, 175, 283
Hpy188III TCNNGA 2 cut(s) 40, 302
Hpy8I GTNNAC 1 cut(s) 296
HpyAV CCTTC 2 cut(s) 114, 211
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 2 cut(s) 98, 208
Kzo9I GATC 1 cut(s) 75
LpnPI CCDG 7 cut(s) 16, 18, 25, 43, 167, 270, 279
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 4 cut(s) 270, 284, 296, 340
MlsI TGGCCA 1 cut(s) 209
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 6 cut(s) 40, 98, 103, 124, 190, 321
Mox20I TGGCCA 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 221
MscI TGGCCA 1 cut(s) 209
MseI TTAA 2 cut(s) 86, 192
Msp20I TGGCCA 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 31
Mva1269I GAATGC 1 cut(s) 69
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 1 cut(s) 75
NlaIII CATG 2 cut(s) 98, 208
NspV TTCGAA 1 cut(s) 21
PctI GAATGC 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 221
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
SaqAI TTAA 2 cut(s) 86, 192
Sau3AI GATC 1 cut(s) 75
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 31
SetI ASST 3 cut(s) 94, 268, 339
SfuI TTCGAA 1 cut(s) 21
SmlI CTYRAG 2 cut(s) 302, 312
SmoI CTYRAG 2 cut(s) 302, 312
SsiI CCGC 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 29
TaqI TCGA 1 cut(s) 21
Tru1I TTAA 2 cut(s) 86, 192
Tru9I TTAA 2 cut(s) 86, 192
TspDTI ATGAA 2 cut(s) 214, 276
XmnI GAANNNNTTC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.