MD03G1295800.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
37159215 .. 37161231
2017 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1295800.v1.1.491

Sequence Viewer

Length: 279 bp
ATGGACGCTCAAATTCAAGAAGCAGTCCCTTGTAGGCCTTGTATTAAGGTGGAATTTCAGCTCGGTTCAGAAACATATTCTGTCAAGGAGCACAAGGGCATTCTTTCGGAGCAACTGGTTTCTGTGAAAGAAGAAAGCATGAGAATATTGAAGGACTTCATCACCAGACACAATGTTCCTAATGATGTCCCTGATGAACTTGTTGAAAACTCTTCGGAAGACGATGGTGAAATCCTTGAAAAGCCTCCTGTAAAGTCAAAGAAGACGAAGTTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.46

Weight (kDa)

5.01

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013860)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 12, 53
AgsI TTSAA 4 cut(s) 17, 151, 206, 239
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw21I GWGCWC 1 cut(s) 93
AoxI GGCC 1 cut(s) 35
ApoI RAATTY 2 cut(s) 12, 53
Asp700I GAANNNNTTC 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 154, 239
BbsI GAAGAC 2 cut(s) 225, 269
Bbv12I GWGCWC 1 cut(s) 93
BccI CCATC 1 cut(s) 218
BpiI GAAGAC 2 cut(s) 225, 269
Bse1I ACTGG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 120
BshFI GGCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 93
BslFI GGGAC 2 cut(s) 11, 173
BsmFI GGGAC 2 cut(s) 11, 173
BsmI GAATGC 1 cut(s) 99
BsnI GGCC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 93
BspANI GGCC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 217
BstV2I GAAGAC 2 cut(s) 225, 269
BsuRI GGCC 1 cut(s) 37
CseI GACGC 1 cut(s) 14
CviAII CATG 1 cut(s) 139
CviJI RGCY 3 cut(s) 37, 61, 244
CviKI_1 RGCY 3 cut(s) 37, 61, 244
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco147I AGGCCT 1 cut(s) 37
FaeI CATG 1 cut(s) 142
FaiI YATR 2 cut(s) 76, 140
FaqI GGGAC 2 cut(s) 11, 173
FatI CATG 1 cut(s) 138
HaeIII GGCC 1 cut(s) 37
HgaI GACGC 1 cut(s) 14
Hin1II CATG 1 cut(s) 142
HphI GGTGA 2 cut(s) 154, 239
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 3 cut(s) 70, 109, 217
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 145
Hsp92II CATG 1 cut(s) 142
LmnI GCTCC 2 cut(s) 88, 109
LpnPI CCDG 4 cut(s) 101, 178, 204, 261
MboII GAAGA 4 cut(s) 143, 204, 230, 274
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 2 cut(s) 12, 53
MnlI CCTC 1 cut(s) 255
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 99
NlaIII CATG 1 cut(s) 142
PceI AGGCCT 1 cut(s) 37
PctI GAATGC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 45
SduI GDGCHC 1 cut(s) 93
SetI ASST 2 cut(s) 51, 63
Sse9I AATT 2 cut(s) 12, 53
SseBI AGGCCT 1 cut(s) 37
SspI AATATT 1 cut(s) 147
StuI AGGCCT 1 cut(s) 37
TasI AATT 2 cut(s) 12, 53
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TspDTI ATGAA 2 cut(s) 148, 210
XapI RAATTY 2 cut(s) 12, 53
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.