Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015488

Physical Location & Seq

Genomic Coordinates Forward (+)

17780429 .. 17781727

Gene Structure 1299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCCAGGGATCACACTAGGAGACACGGTGCCGAACCTAGAAGTGGAGACGACACATGACAAGTTCAAACTTCATGACTACTTCGCCAATTCTTGGACCGTCCTCTTCTCTCATCCCGGGGATTTCACACCCGTGTGCACCACGGAGCTTGGTGCGATGGCCAAATACGCTCATGAGTTCGATAAGAGAGGCGTGAAGCTCCTTGGTCTGTCTTGTGACGATGTACAGTCACACAAAGACTGGATCAAAGATATTGAAGCCTTTAATCACGGAAGCAAGGTGAATTACCCGATAATCGCTGACCCGAACAAAGAGATCATTCCTCAGCTTAACATGATTGATCCAATTGAGAACGGACCGTCTCGTGCCCTTCATATTGTTGGTCCTGACAGTAAGATAAAATTGAGCTTCTTGTATCCGTCGACCACGGGACGTAACATGGACGAAGTATTGAGGGCTTTAGACTCGTTGTTGATGGCGTCCAAGCACAATAACAAGATCGCCACTCCGGTTAACTGGAAGCCAGATCAACCGGTTGTGATTTCGCCTGCTGTGTCGGACGAGGAAGCCAAAAAGATGTTCCCACAGGGTTTCAAGACCGCCGATCTTCCGTCAAAGAAAGGCTATCTGCGTCACACAGAGGTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008379 GO:0009269 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0051920 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0097237 GO:0097437 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

216

Amino Acids

24.08

Weight (kDa)

6.13

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	7 - 134	1.3e-30	AhpC/TSA family
Redoxin	PF08534	7 - 151	4.1e-14	Redoxin
1-cysPrx_C	PF10417	165 - 196	6.2e-08	C-terminal domain of 1-Cys peroxiredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48130
fragaria_vesca	FvH4_4g21120 FvH4_4g21120
malus_domestica	MD13G1144500.v1.1
prunus_persica	Prupe.1G109000_v2.0.a1
pyrus_communis	pycom13g12500
rosa_chinensis	RchiOBHm_Chr4g0426681
rosa_laevigata	RLG00000007285
rosa_multiflora	Rmu_sc0001821.1_g000016
rosa_roxburghii	Rroxscaffold_5G00368670
rosa_rugosa	Rorug04G0214200
rosa_samantha	Rh4AG269300 Rh4BG275600 Rh4CG290100 Rh4DG272600
rosa_wichuraiana	Rw4G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	28
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	422
AciI	CCGC	1 cut(s)	600
AclWI	GGATC	3 cut(s)	17, 251, 335
AcoI	YGGCCR	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	479
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	2 cut(s)	43, 93
AgeI	ACCGGT	1 cut(s)	532
AgsI	TTSAA	3 cut(s)	67, 257, 595
AjnI	CCWGG	1 cut(s)	4
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
AleI	CACNNNNGTG	2 cut(s)	131, 133
AluBI	AGCT	4 cut(s)	148, 199, 328, 408
AluI	AGCT	4 cut(s)	148, 199, 328, 408
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	3 cut(s)	15, 41, 366
Alw44I	GTGCAC	1 cut(s)	136
AlwI	GGATC	3 cut(s)	17, 251, 335
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	1 cut(s)	159
ApaLI	GTGCAC	1 cut(s)	136
AsiGI	ACCGGT	1 cut(s)	532
AspS9I	GGNCC	3 cut(s)	96, 356, 383
AsuC2I	CCSGG	2 cut(s)	117, 118
AsuHPI	GGTGA	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	3 cut(s)	96, 356, 383
BaeGI	GKGCMC	2 cut(s)	140, 370
BalI	TGGCCA	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	140
BbvCI	CCTCAGC	1 cut(s)	324
BccI	CCATC	2 cut(s)	151, 469
BciT130I	CCWGG	1 cut(s)	6
BciVI	GTATCC	1 cut(s)	426
BcnI	CCSGG	2 cut(s)	117, 118
BcoDI	GTCTC	3 cut(s)	15, 41, 366
BfaI	CTAG	2 cut(s)	17, 38
BfuI	GTATCC	1 cut(s)	426
Bme1390I	CCNGG	3 cut(s)	6, 117, 118
Bme18I	GGWCC	3 cut(s)	96, 356, 383
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	3 cut(s)	96, 356, 383
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	3 cut(s)	6, 117, 118
Bpu10I	CCTNAGC	1 cut(s)	324
BpuMI	CCSGG	2 cut(s)	117, 118
BsaHI	GRCGYC	1 cut(s)	479
BsaJI	CCNNGG	6 cut(s)	5, 116, 117, 141, 202, 426
BsaWI	WCCGGW	2 cut(s)	508, 532
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 93
Bse118I	RCCGGY	1 cut(s)	532
Bse1I	ACTGG	2 cut(s)	245, 521
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	6 cut(s)	5, 116, 117, 141, 202, 426
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	2 cut(s)	43, 93
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	2 cut(s)	245, 521
BseSI	GKGCMC	2 cut(s)	140, 370
BshFI	GGCC	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	28
BshTI	ACCGGT	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	3 cut(s)	117, 509, 533
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	2 cut(s)	43, 93
BsmAI	GTCTC	3 cut(s)	15, 41, 366
BsmBI	CGTCTC	2 cut(s)	41, 366
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	2 cut(s)	140, 370
Bsp1407I	TGTACA	1 cut(s)	223
Bsp143I	GATC	7 cut(s)	9, 243, 315, 340, 498, 526, 604
BspACI	CCGC	1 cut(s)	600
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	337
BspHI	TCATGA	2 cut(s)	73, 172
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	3 cut(s)	17, 251, 335
BspT107I	GGYRCC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	532
BsrGI	TGTACA	1 cut(s)	223
BsrI	ACTGG	2 cut(s)	245, 521
BssAI	RCCGGY	1 cut(s)	532
BssECI	CCNNGG	6 cut(s)	5, 116, 117, 141, 202, 426
BssMI	GATC	7 cut(s)	9, 243, 315, 340, 498, 526, 604
BssNI	GRCGYC	1 cut(s)	479
BssSI	CACGAG	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	202
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	5 cut(s)	28, 100, 228, 360, 392
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	479
BstAUI	TGTACA	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	2 cut(s)	141, 426
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	7 cut(s)	12, 246, 318, 343, 501, 529, 607
BstMAI	GTCTC	3 cut(s)	15, 41, 366
BstMBI	GATC	7 cut(s)	9, 243, 315, 340, 498, 526, 604
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	3 cut(s)	4, 115, 116
BstSLI	GKGCMC	2 cut(s)	140, 370
BsuI	GTATCC	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	161
BtgI	CCRYGG	2 cut(s)	141, 426
BtgZI	GCGATG	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	549
CciI	TCATGA	2 cut(s)	73, 172
Cfr10I	RCCGGY	1 cut(s)	532
Cfr13I	GGNCC	3 cut(s)	96, 356, 383
Cfr9I	CCCGGG	1 cut(s)	116
CpoI	CGGWCCG	1 cut(s)	356
CseI	GACGC	2 cut(s)	468, 620
Csp6I	GTAC	1 cut(s)	224
CspAI	ACCGGT	1 cut(s)	532
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CspI	CGGWCCG	1 cut(s)	356
CviAII	CATG	5 cut(s)	56, 74, 173, 334, 439
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	7 cut(s)	11, 245, 317, 342, 500, 528, 606
DpnII	GATC	7 cut(s)	9, 243, 315, 340, 498, 526, 604
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	202
Eco47I	GGWCC	3 cut(s)	96, 356, 383
Eco88I	CYCGRG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
Esp3I	CGTCTC	2 cut(s)	41, 366
FaeI	CATG	5 cut(s)	59, 77, 176, 337, 442
FaiI	YATR	6 cut(s)	57, 75, 174, 335, 375, 440
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	5 cut(s)	55, 73, 172, 333, 438
FblI	GTMKAC	1 cut(s)	422
FokI	GGATG	1 cut(s)	99
FspBI	CTAG	2 cut(s)	17, 38
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	3 cut(s)	117, 509, 533
HgaI	GACGC	2 cut(s)	468, 620
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	5 cut(s)	59, 77, 176, 337, 442
HincII	GTYRAC	2 cut(s)	423, 514
HindII	GTYRAC	2 cut(s)	423, 514
HinfI	GANTC	1 cut(s)	464
HpaI	GTTAAC	1 cut(s)	514
HpaII	CCGG	3 cut(s)	117, 509, 533
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	3 cut(s)	138, 423, 514
Hpy188I	TCNGA	1 cut(s)	559
Hpy188III	TCNNGA	5 cut(s)	74, 173, 386, 595, 648
Hpy8I	GTNNAC	3 cut(s)	138, 423, 514
Hpy99I	CGWCG	1 cut(s)	424
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	5 cut(s)	28, 100, 228, 360, 392
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	1 cut(s)	433
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	5 cut(s)	59, 77, 176, 337, 442
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	7 cut(s)	9, 243, 315, 340, 498, 526, 604
LmnI	GCTCC	2 cut(s)	145, 204
MaeI	CTAG	2 cut(s)	17, 38
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	4 cut(s)	215, 228, 434, 632
MalI	GATC	7 cut(s)	11, 245, 317, 342, 500, 528, 606
MboI	GATC	7 cut(s)	9, 243, 315, 340, 498, 526, 604
MboII	GAAGA	2 cut(s)	97, 599
MfeI	CAATTG	1 cut(s)	345
MhlI	GDGCHC	2 cut(s)	140, 370
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	4 cut(s)	88, 283, 345, 401
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	6 cut(s)	113, 182, 333, 447, 556, 634
Mox20I	TGGCCA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	3 cut(s)	264, 330, 513
MslI	CAYNNNNRTG	2 cut(s)	131, 133
Msp20I	TGGCCA	1 cut(s)	161
MspI	CCGG	3 cut(s)	117, 509, 533
MspR9I	CCNGG	3 cut(s)	6, 117, 118
MunI	CAATTG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	167
NciI	CCSGG	2 cut(s)	117, 118
NdeII	GATC	7 cut(s)	9, 243, 315, 340, 498, 526, 604
NlaIII	CATG	5 cut(s)	59, 77, 176, 337, 442
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	3 cut(s)	215, 228, 632
OliI	CACNNNNGTG	2 cut(s)	131, 133
PagI	TCATGA	2 cut(s)	73, 172
PflMI	CCANNNNNTGG	1 cut(s)	93
PinAI	ACCGGT	1 cut(s)	532
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	3 cut(s)	96, 356, 383
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	2 cut(s)	131, 133
Rsr2I	CGGWCCG	1 cut(s)	356
RsrII	CGGWCCG	1 cut(s)	356
SalI	GTCGAC	1 cut(s)	421
SaqAI	TTAA	3 cut(s)	264, 330, 513
Sau3AI	GATC	7 cut(s)	9, 243, 315, 340, 498, 526, 604
Sau96I	GGNCC	3 cut(s)	96, 356, 383
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	3 cut(s)	6, 117, 118
SduI	GDGCHC	2 cut(s)	140, 370
SetI	ASST	8 cut(s)	39, 150, 201, 282, 330, 410, 436, 645
SinI	GGWCC	3 cut(s)	96, 356, 383
SmaI	CCCGGG	1 cut(s)	118
SmiMI	CAYNNNNRTG	2 cut(s)	131, 133
Sse9I	AATT	4 cut(s)	88, 283, 345, 401
SsiI	CCGC	1 cut(s)	600
SspMI	CTAG	2 cut(s)	17, 38
StyD4I	CCNGG	3 cut(s)	4, 115, 116
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	5 cut(s)	28, 100, 228, 360, 392
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	180, 422
TasI	AATT	4 cut(s)	88, 283, 345, 401
TatI	WGTACW	1 cut(s)	223
Tru1I	TTAA	3 cut(s)	264, 330, 513
Tru9I	TTAA	3 cut(s)	264, 330, 513
TseFI	GTSAC	3 cut(s)	215, 228, 632
Tsp45I	GTSAC	3 cut(s)	215, 228, 632
TspDTI	ATGAA	2 cut(s)	62, 362
TspGWI	ACGGA	5 cut(s)	158, 285, 369, 408, 600
TspMI	CCCGGG	1 cut(s)	116
Van91I	CCANNNNNTGG	1 cut(s)	93
VneI	GTGCAC	1 cut(s)	136
VpaK11BI	GGWCC	3 cut(s)	96, 356, 383
XmaI	CCCGGG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	422
XspI	CTAG	2 cut(s)	17, 38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.