Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015488

Physical Location & Seq

Genomic Coordinates Forward (+)

24253692 .. 24255907

Gene Structure 2216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21120.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCCTGGGCTAACCATTGGAGACATTATCCCCAACCTCGAAGCTGAAACCACCCAAGGAAAGATCAAGCTCCATGACTACATCGGGAACAGCTGGGCCATCGTTTTCTCTCACCCCGGTGATTTCACGCCGGTCTGCACCACGGAGCTTGCGAAGATGGCCGAGTACTCCAAGGTGTTCAAGGAGAAAGGAGTCAAGCTGATCGGTTTGTCCTGCGACGACGTCTCGTCTCATAACGAGTGGATCAAGGACATTGAAGCCTACAGTGCCGGGTGCAAGGTGGACTATCCGATCATCGCCGATACCAAGAGAGAGATCATGAAGCAACTCAACATGGTGGATCCCGAAGAGAAAGACTCCTCCGGAAACAGCCTACCTTCCCGCGCTCTCCATATAGTCGGCCCTGACAAGAAGGTGGTGTTGAGCTTTCTGTATCCGTCGACCACTGGCCGGAACATGGATGAGGTGGTGAGGGTGTTGGAGTCGCTGCAAAAGGCGAAGCATCACAAAATTGCTACTCCGGCGAACTGGAAGCCTGGAGATGATGTTGTGATATCTCCTACTGTGTCGCAGGAGGAGGCCCAGAAGATGTTCCCTCAGGGCAACAAGACCAAGGACCTTCCTTCCCAGAAAGGGTACCTGCGCTTTACAAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008379 GO:0009269 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0051920 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0097237 GO:0097437 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

220

Amino Acids

24.3

Weight (kDa)

6.31

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	6 - 140	1.7e-29	AhpC/TSA family
Redoxin	PF08534	7 - 154	2.8e-14	Redoxin
1-cysPrx_C	PF10417	163 - 200	7.7e-12	C-terminal domain of 1-Cys peroxiredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48130
fragaria_vesca	FvH4_4g21120 FvH4_4g21120
malus_domestica	MD13G1144500.v1.1
prunus_persica	Prupe.1G109000_v2.0.a1
pyrus_communis	pycom13g12500
rosa_chinensis	RchiOBHm_Chr4g0426681
rosa_laevigata	RLG00000007285
rosa_multiflora	Rmu_sc0001821.1_g000016
rosa_roxburghii	Rroxscaffold_5G00368670
rosa_rugosa	Rorug04G0214200
rosa_samantha	Rh4AG269300 Rh4BG275600 Rh4CG290100 Rh4DG272600
rosa_wichuraiana	Rw4G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
Acc36I	ACCTGC	1 cut(s)	648
Acc65I	GGTACC	1 cut(s)	636
AccB1I	GGYRCC	1 cut(s)	636
AccI	GTMKAC	1 cut(s)	440
AccII	CGCG	1 cut(s)	384
AccIII	TCCGGA	1 cut(s)	362
AciI	CCGC	1 cut(s)	382
AclWI	GGATC	3 cut(s)	251, 335, 348
AcoI	YGGCCR	2 cut(s)	159, 448
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	167, 638
AfiI	CCNNNNNNNGG	3 cut(s)	450, 457, 633
AgsI	TTSAA	2 cut(s)	181, 257
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	2 cut(s)	4, 535
AleI	CACNNNNGTG	1 cut(s)	117
AluBI	AGCT	6 cut(s)	44, 70, 93, 148, 199, 426
AluI	AGCT	6 cut(s)	44, 70, 93, 148, 199, 426
Alw26I	GTCTC	3 cut(s)	15, 229, 234
AlwI	GGATC	3 cut(s)	251, 335, 348
Aor13HI	TCCGGA	1 cut(s)	362
AoxI	GGCC	5 cut(s)	96, 159, 400, 448, 579
ApeKI	GCWGC	1 cut(s)	487
Asp700I	GAANNNNTTC	1 cut(s)	590
Asp718I	GGTACC	1 cut(s)	636
AspLEI	GCGC	2 cut(s)	386, 645
AspS9I	GGNCC	4 cut(s)	96, 401, 580, 616
AsuC2I	CCSGG	2 cut(s)	117, 271
AsuHPI	GGTGA	3 cut(s)	104, 131, 481
AvaII	GGWCC	1 cut(s)	616
AxyI	CCTNAGG	1 cut(s)	597
BamHI	GGATCC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	636
BbvI	GCAGC	1 cut(s)	474
BccI	CCATC	2 cut(s)	107, 151
BciT130I	CCWGG	2 cut(s)	6, 537
BciVI	GTATCC	1 cut(s)	444
BcnI	CCSGG	2 cut(s)	117, 271
BcoDI	GTCTC	3 cut(s)	15, 229, 234
BfmI	CTRYAG	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	648
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	1 cut(s)	488
BlsI	GCNGC	1 cut(s)	489
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	4 cut(s)	6, 117, 271, 537
Bme18I	GGWCC	1 cut(s)	616
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgT120I	GGNCC	4 cut(s)	96, 401, 580, 616
BmiI	GGNNCC	2 cut(s)	342, 638
BmrFI	CCNGG	4 cut(s)	6, 117, 271, 537
BmsI	GCATC	1 cut(s)	511
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BpmI	CTGGAG	1 cut(s)	558
BpuMI	CCSGG	2 cut(s)	117, 271
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	6 cut(s)	5, 55, 115, 141, 171, 612
BsaWI	WCCGGW	1 cut(s)	362
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	3 cut(s)	450, 457, 633
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	451, 533
Bse21I	CCTNAGG	1 cut(s)	597
BseAI	TCCGGA	1 cut(s)	362
BseBI	CCWGG	2 cut(s)	6, 537
BseDI	CCNNGG	6 cut(s)	5, 55, 115, 141, 171, 612
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	3 cut(s)	450, 457, 633
BseMII	CTCAG	1 cut(s)	611
BseNI	ACTGG	2 cut(s)	451, 533
BseRI	GAGGAG	2 cut(s)	349, 590
BseXI	GCAGC	1 cut(s)	474
BseYI	CCCAGC	1 cut(s)	93
BsgI	GTGCAG	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	5 cut(s)	98, 161, 402, 450, 581
BshNI	GGYRCC	1 cut(s)	636
BsiSI	CCGG	6 cut(s)	117, 131, 270, 363, 451, 521
BslI	CCNNNNNNNGG	3 cut(s)	450, 457, 633
BsmAI	GTCTC	3 cut(s)	15, 229, 234
BsmBI	CGTCTC	2 cut(s)	229, 234
BsnI	GGCC	5 cut(s)	98, 161, 402, 450, 581
Bsp13I	TCCGGA	1 cut(s)	362
Bsp143I	GATC	6 cut(s)	63, 201, 243, 291, 315, 340
BspACI	CCGC	1 cut(s)	382
BspANI	GGCC	5 cut(s)	98, 161, 402, 450, 581
BspCNI	CTCAG	1 cut(s)	610
BspEI	TCCGGA	1 cut(s)	362
BspFNI	CGCG	1 cut(s)	384
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	2 cut(s)	342, 638
BspMI	ACCTGC	1 cut(s)	648
BspPI	GGATC	3 cut(s)	251, 335, 348
BspT107I	GGYRCC	1 cut(s)	636
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	451, 533
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	6 cut(s)	5, 55, 115, 141, 171, 612
BssMI	GATC	6 cut(s)	63, 201, 243, 291, 315, 340
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	3 cut(s)	55, 171, 612
Bst2UI	CCWGG	2 cut(s)	6, 537
Bst4CI	ACNGT	2 cut(s)	266, 565
Bst6I	CTCTTC	1 cut(s)	342
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	597
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	466
BstFNI	CGCG	1 cut(s)	384
BstHHI	GCGC	2 cut(s)	386, 645
BstKTI	GATC	6 cut(s)	66, 204, 246, 294, 318, 343
BstMAI	GTCTC	3 cut(s)	15, 229, 234
BstMBI	GATC	6 cut(s)	63, 201, 243, 291, 315, 340
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 266, 521
BstNI	CCWGG	2 cut(s)	6, 537
BstSCI	CCNGG	4 cut(s)	4, 115, 269, 535
BstSFI	CTRYAG	1 cut(s)	262
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	474
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu36I	CCTNAGG	1 cut(s)	597
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	5 cut(s)	98, 161, 402, 450, 581
BtgI	CCRYGG	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	2 cut(s)	271, 444
BveI	ACCTGC	1 cut(s)	648
Cac8I	GCNNGC	1 cut(s)	150
CciI	TCATGA	1 cut(s)	318
CfoI	GCGC	2 cut(s)	386, 645
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	4 cut(s)	96, 401, 580, 616
Csp6I	GTAC	2 cut(s)	166, 637
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	4 cut(s)	74, 319, 334, 457
CviQI	GTAC	2 cut(s)	166, 637
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	6 cut(s)	65, 203, 245, 293, 317, 342
DpnII	GATC	6 cut(s)	63, 201, 243, 291, 315, 340
DriI	GACNNNNNGTC	1 cut(s)	226
EaeI	YGGCCR	2 cut(s)	159, 448
Eam1104I	CTCTTC	1 cut(s)	342
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	3 cut(s)	55, 171, 612
Eco32I	GATATC	1 cut(s)	555
Eco47I	GGWCC	1 cut(s)	616
Eco81I	CCTNAGG	1 cut(s)	597
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRII	CCWGG	2 cut(s)	4, 535
EcoRV	GATATC	1 cut(s)	555
EcoT14I	CCWWGG	3 cut(s)	55, 171, 612
ErhI	CCWWGG	3 cut(s)	55, 171, 612
Esp3I	CGTCTC	2 cut(s)	229, 234
FaeI	CATG	4 cut(s)	77, 322, 337, 460
FaiI	YATR	7 cut(s)	75, 234, 320, 335, 393, 395, 458
FatI	CATG	4 cut(s)	73, 318, 333, 456
FauI	CCCGC	1 cut(s)	389
FblI	GTMKAC	1 cut(s)	440
Fnu4HI	GCNGC	1 cut(s)	488
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	1 cut(s)	488
GlaI	GCGC	2 cut(s)	385, 644
GluI	GCNGC	1 cut(s)	488
GsaI	CCCAGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	5 cut(s)	98, 161, 402, 450, 581
HapII	CCGG	6 cut(s)	117, 131, 270, 363, 451, 521
HhaI	GCGC	2 cut(s)	386, 645
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	77, 322, 337, 460
Hin6I	GCGC	2 cut(s)	384, 643
HinP1I	GCGC	2 cut(s)	384, 643
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	3 cut(s)	192, 356, 482
HpaII	CCGG	6 cut(s)	117, 131, 270, 363, 451, 521
HphI	GGTGA	3 cut(s)	104, 131, 481
Hpy166II	GTNNAC	2 cut(s)	283, 441
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	4 cut(s)	85, 319, 344, 363
Hpy8I	GTNNAC	2 cut(s)	283, 441
Hpy99I	CGWCG	3 cut(s)	221, 224, 442
HpyAV	CCTTC	4 cut(s)	387, 406, 629, 633
HpyCH4III	ACNGT	2 cut(s)	266, 565
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	3 cut(s)	138, 276, 490
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 266, 521
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	77, 322, 337, 460
HspAI	GCGC	2 cut(s)	384, 643
Kpn2I	TCCGGA	1 cut(s)	362
KpnI	GGTACC	1 cut(s)	640
Kzo9I	GATC	6 cut(s)	63, 201, 243, 291, 315, 340
LmnI	GCTCC	2 cut(s)	75, 145
Lsp1109I	GCAGC	1 cut(s)	474
LweI	GCATC	1 cut(s)	511
MaeII	ACGT	1 cut(s)	222
MalI	GATC	6 cut(s)	65, 203, 245, 293, 317, 342
MboI	GATC	6 cut(s)	63, 201, 243, 291, 315, 340
MboII	GAAGA	3 cut(s)	166, 359, 598
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	1 cut(s)	510
MlyI	GAGTC	3 cut(s)	201, 350, 491
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	7 cut(s)	47, 370, 457, 465, 568, 571, 606
MroI	TCCGGA	1 cut(s)	362
MroXI	GAANNNNTTC	1 cut(s)	590
MslI	CAYNNNNRTG	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	6 cut(s)	117, 131, 270, 363, 451, 521
MspR9I	CCNGG	4 cut(s)	6, 117, 271, 537
MvaI	CCWGG	2 cut(s)	6, 537
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	3 cut(s)	158, 266, 521
NciI	CCSGG	2 cut(s)	117, 271
NdeII	GATC	6 cut(s)	63, 201, 243, 291, 315, 340
NlaIII	CATG	4 cut(s)	77, 322, 337, 460
NlaIV	GGNNCC	2 cut(s)	342, 638
NmeAIII	GCCGAG	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	117
PagI	TCATGA	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	590
PflFI	GACNNNGTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	489
PleI	GAGTC	3 cut(s)	200, 350, 490
PpsI	GAGTC	3 cut(s)	200, 350, 490
PpuMI	RGGWCCY	1 cut(s)	616
Psp5II	RGGWCCY	1 cut(s)	616
Psp6I	CCWGG	2 cut(s)	4, 535
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	2 cut(s)	4, 535
PspN4I	GGNNCC	2 cut(s)	342, 638
PspPI	GGNCC	4 cut(s)	96, 401, 580, 616
PspPPI	RGGWCCY	1 cut(s)	616
PsuI	RGATCY	1 cut(s)	340
PsyI	GACNNNGTC	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	93
RsaI	GTAC	2 cut(s)	167, 638
RsaNI	GTAC	2 cut(s)	166, 637
RseI	CAYNNNNRTG	1 cut(s)	117
SalI	GTCGAC	1 cut(s)	439
SatI	GCNGC	1 cut(s)	488
Sau3AI	GATC	6 cut(s)	63, 201, 243, 291, 315, 340
Sau96I	GGNCC	4 cut(s)	96, 401, 580, 616
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	3 cut(s)	201, 350, 491
ScrFI	CCNGG	4 cut(s)	6, 117, 271, 537
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	1 cut(s)	262
SinI	GGWCC	1 cut(s)	616
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	510
SsiI	CCGC	1 cut(s)	382
StyD4I	CCNGG	4 cut(s)	4, 115, 269, 535
StyI	CCWWGG	3 cut(s)	55, 171, 612
TaaI	ACNGT	2 cut(s)	266, 565
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	39, 440
TasI	AATT	1 cut(s)	510
TatI	WGTACW	1 cut(s)	165
TscAI	CASTG	2 cut(s)	271, 451
TseI	GCWGC	1 cut(s)	487
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	2 cut(s)	158, 426
TspRI	CASTG	2 cut(s)	271, 451
Tth111I	GACNNNGTC	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	616
XmiI	GTMKAC	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	590
ZraI	GACGTC	1 cut(s)	223
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.