Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015488

Physical Location & Seq

Genomic Coordinates Reverse (-)

8719300 .. 8720464

Gene Structure 1165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G109000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGCCTGGCCTAACCATCGGAGACACACTCCCGAACATTGAAGCTGAGAGCACCCATGGAAAGATCAAGCTTCACGACTACATCGGCGATAGCTGGGCCATCGTTTTCTCTCACCCGGGCGATTTTACGCCGGTGTGCACGACTGAGCTCGGGAAGATGGCCGAATACGCTATGCAATTTCAAGAGAGAGGGGTGAAGCTTGTGGGTTTGTCCTGCAGTGACGTCCAGTCACACCTTGAGTATATCAAGGACATCGAAGCCTTCAGCACCTGCGGGCGCAAAGTGGAGTATCCGATTCTGGCAGATCCGACCCGAGAGATCATCAAGCAACTTAACATGGTGGACCCTGACATGAAGGACTCATCAGGAAACCCGGTTCCGTCTCGTGCCCTTCATATTGTGGGCCCTGACAAGAAGGTGAAGTTGAGCTTTCTGTACCCCGCGACCACAGGGCGGAACATGGACGAGGTGCTGAGGGTCCTGGAGTCCATGCAGATGGCGAGCAAGAAGAAGATCGCAACCCCGGCGAACTGGAAGCCGGGCGAGCCGGTGGTCATATCTCCTTCTGTGTCTCAGGAGGAGGCTAAAAAAATGTTCCCTCAGGGCTACAAGACCATGGACCTGCCATCCAAGAAGGAGTACCTGCGTTTTACTACTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008379 GO:0009269 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0051920 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0097237 GO:0097437 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

221

Amino Acids

24.49

Weight (kDa)

6.53

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48130
fragaria_vesca	FvH4_4g21120 FvH4_4g21120
malus_domestica	MD13G1144500.v1.1
prunus_persica	Prupe.1G109000_v2.0.a1
pyrus_communis	pycom13g12500
rosa_chinensis	RchiOBHm_Chr4g0426681
rosa_laevigata	RLG00000007285
rosa_multiflora	Rmu_sc0001821.1_g000016
rosa_roxburghii	Rroxscaffold_5G00368670
rosa_rugosa	Rorug04G0214200
rosa_samantha	Rh4AG269300 Rh4BG275600 Rh4CG290100 Rh4DG272600
rosa_wichuraiana	Rw4G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	278
AatII	GACGTC	1 cut(s)	225
Acc36I	ACCTGC	3 cut(s)	278, 630, 651
AccII	CGCG	1 cut(s)	443
AciI	CCGC	3 cut(s)	273, 441, 454
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	247
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	437, 641
AfiI	CCNNNNNNNGG	1 cut(s)	453
AgsI	TTSAA	2 cut(s)	41, 182
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	2 cut(s)	4, 480
AloI	GAACNNNNNNTCC	2 cut(s)	360, 392
AluBI	AGCT	6 cut(s)	44, 70, 93, 148, 199, 429
AluI	AGCT	6 cut(s)	44, 70, 93, 148, 199, 429
Alw21I	GWGCWC	3 cut(s)	53, 140, 150
Alw26I	GTCTC	3 cut(s)	15, 387, 576
Alw44I	GTGCAC	1 cut(s)	136
AlwI	GGATC	1 cut(s)	299
AlwNI	CAGNNNCTG	1 cut(s)	270
Ama87I	CYCGRG	3 cut(s)	115, 149, 312
AoxI	GGCC	4 cut(s)	7, 96, 159, 403
ApaI	GGGCCC	1 cut(s)	407
ApaLI	GTGCAC	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	6 cut(s)	96, 343, 403, 404, 478, 619
AsuC2I	CCSGG	5 cut(s)	116, 117, 374, 524, 540
AsuHPI	GGTGA	3 cut(s)	104, 205, 430
AvaI	CYCGRG	3 cut(s)	115, 149, 312
AvaII	GGWCC	3 cut(s)	343, 478, 619
AxyI	CCTNAGG	1 cut(s)	600
BaeGI	GKGCMC	3 cut(s)	140, 391, 407
BanII	GRGCYC	2 cut(s)	150, 407
BauI	CACGAG	1 cut(s)	384
Bbv12I	GWGCWC	3 cut(s)	53, 140, 150
BbvCI	CCTCAGC	1 cut(s)	473
BccI	CCATC	5 cut(s)	23, 107, 151, 490, 634
BciT130I	CCWGG	2 cut(s)	6, 482
BciVI	GTATCC	1 cut(s)	300
BcnI	CCSGG	5 cut(s)	116, 117, 374, 524, 540
BcoDI	GTCTC	3 cut(s)	15, 387, 576
BfmI	CTRYAG	1 cut(s)	214
BfuAI	ACCTGC	3 cut(s)	278, 630, 651
BfuI	GTATCC	1 cut(s)	300
Bme1390I	CCNGG	7 cut(s)	6, 116, 117, 374, 482, 524, 540
Bme18I	GGWCC	3 cut(s)	343, 478, 619
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmeT110I	CYCGRG	3 cut(s)	115, 149, 312
BmgT120I	GGNCC	6 cut(s)	96, 343, 403, 404, 478, 619
BmiI	GGNNCC	4 cut(s)	345, 378, 405, 479
BmrFI	CCNGG	7 cut(s)	6, 116, 117, 374, 482, 524, 540
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BpmI	CTGGAG	1 cut(s)	503
Bpu10I	CCTNAGC	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	5 cut(s)	116, 117, 374, 524, 540
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	4 cut(s)	55, 115, 522, 615
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse118I	RCCGGY	2 cut(s)	130, 547
Bse1I	ACTGG	2 cut(s)	226, 536
Bse21I	CCTNAGG	1 cut(s)	600
BseBI	CCWGG	2 cut(s)	6, 482
BseDI	CCNNGG	4 cut(s)	55, 115, 522, 615
BseGI	GGATG	1 cut(s)	626
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseMII	CTCAG	5 cut(s)	36, 135, 464, 587, 614
BseNI	ACTGG	2 cut(s)	226, 536
BseRI	GAGGAG	1 cut(s)	593
BseSI	GKGCMC	3 cut(s)	140, 391, 407
BseYI	CCCAGC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	443
BshFI	GGCC	4 cut(s)	9, 98, 161, 405
BsiHKAI	GWGCWC	3 cut(s)	53, 140, 150
BsiHKCI	CYCGRG	3 cut(s)	115, 149, 312
BsiSI	CCGG	6 cut(s)	116, 131, 374, 524, 539, 548
BslI	CCNNNNNNNGG	1 cut(s)	453
BsmAI	GTCTC	3 cut(s)	15, 387, 576
BsmBI	CGTCTC	1 cut(s)	387
BsnI	GGCC	4 cut(s)	9, 98, 161, 405
BsoBI	CYCGRG	3 cut(s)	115, 149, 312
Bsp120I	GGGCCC	1 cut(s)	403
Bsp1286I	GDGCHC	5 cut(s)	53, 140, 150, 391, 407
Bsp143I	GATC	4 cut(s)	63, 304, 318, 513
Bsp19I	CCATGG	2 cut(s)	55, 615
BspACI	CCGC	3 cut(s)	273, 441, 454
BspANI	GGCC	4 cut(s)	9, 98, 161, 405
BspCNI	CTCAG	5 cut(s)	37, 136, 465, 586, 613
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	4 cut(s)	345, 378, 405, 479
BspMAI	CTGCAG	1 cut(s)	218
BspMI	ACCTGC	3 cut(s)	278, 630, 651
BspPI	GGATC	1 cut(s)	299
BsrFI	RCCGGY	2 cut(s)	130, 547
BsrI	ACTGG	2 cut(s)	226, 536
BssAI	RCCGGY	2 cut(s)	130, 547
BssECI	CCNNGG	4 cut(s)	55, 115, 522, 615
BssMI	GATC	4 cut(s)	63, 304, 318, 513
BssNI	GRCGYC	1 cut(s)	222
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	55, 615
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	6, 482
Bst4CI	ACNGT	1 cut(s)	658
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	3 cut(s)	275, 502, 545
BstDEI	CTNAG	5 cut(s)	45, 144, 473, 573, 600
BstDSI	CCRYGG	2 cut(s)	55, 615
BstF5I	GGATG	1 cut(s)	626
BstFNI	CGCG	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	4 cut(s)	66, 307, 321, 516
BstMAI	GTCTC	3 cut(s)	15, 387, 576
BstMBI	GATC	4 cut(s)	63, 304, 318, 513
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 524, 544
BstNI	CCWGG	2 cut(s)	6, 482
BstSCI	CCNGG	7 cut(s)	4, 114, 115, 372, 480, 522, 538
BstSFI	CTRYAG	1 cut(s)	214
BstSLI	GKGCMC	3 cut(s)	140, 391, 407
BstUI	CGCG	1 cut(s)	443
BstX2I	RGATCY	1 cut(s)	304
BstXI	CCANNNNNNTGG	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	304
Bsu36I	CCTNAGG	1 cut(s)	600
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	4 cut(s)	9, 98, 161, 405
BtgI	CCRYGG	2 cut(s)	55, 615
BtsCI	GGATG	1 cut(s)	626
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	223
BveI	ACCTGC	3 cut(s)	278, 630, 651
Cac8I	GCNNGC	3 cut(s)	275, 502, 545
CaiI	CAGNNNCTG	1 cut(s)	270
CfoI	GCGC	1 cut(s)	279
Cfr10I	RCCGGY	2 cut(s)	130, 547
Cfr13I	GGNCC	6 cut(s)	96, 343, 403, 404, 478, 619
Cfr9I	CCCGGG	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	436, 640
CviAII	CATG	6 cut(s)	56, 337, 352, 460, 490, 616
CviQI	GTAC	2 cut(s)	436, 640
DdeI	CTNAG	5 cut(s)	45, 144, 473, 573, 600
DpnI	GATC	4 cut(s)	65, 306, 320, 515
DpnII	GATC	4 cut(s)	63, 304, 318, 513
DriI	GACNNNNNGTC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	159
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EciI	GGCGGA	1 cut(s)	469
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	55, 615
Eco24I	GRGCYC	2 cut(s)	150, 407
Eco47I	GGWCC	3 cut(s)	343, 478, 619
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	247
Eco81I	CCTNAGG	1 cut(s)	600
Eco88I	CYCGRG	3 cut(s)	115, 149, 312
EcoICRI	GAGCTC	1 cut(s)	148
EcoO109I	RGGNCCY	2 cut(s)	404, 478
EcoRII	CCWGG	2 cut(s)	4, 480
EcoT14I	CCWWGG	2 cut(s)	55, 615
EcoT38I	GRGCYC	2 cut(s)	150, 407
ErhI	CCWWGG	2 cut(s)	55, 615
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	6 cut(s)	59, 340, 355, 463, 493, 619
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FatI	CATG	6 cut(s)	55, 336, 351, 459, 489, 615
FauI	CCCGC	2 cut(s)	266, 448
FokI	GGATG	1 cut(s)	613
FriOI	GRGCYC	2 cut(s)	150, 407
GlaI	GCGC	1 cut(s)	278
GsaI	CCCAGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	503
HaeIII	GGCC	4 cut(s)	9, 98, 161, 405
HapII	CCGG	6 cut(s)	116, 131, 374, 524, 539, 548
HhaI	GCGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	6 cut(s)	59, 340, 355, 463, 493, 619
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HindIII	AAGCTT	2 cut(s)	68, 197
HinfI	GANTC	3 cut(s)	295, 359, 485
HpaII	CCGG	6 cut(s)	116, 131, 374, 524, 539, 548
HphI	GGTGA	3 cut(s)	104, 205, 430
Hpy166II	GTNNAC	2 cut(s)	138, 343
Hpy188I	TCNGA	3 cut(s)	20, 294, 309
Hpy188III	TCNNGA	6 cut(s)	31, 74, 151, 182, 366, 575
Hpy8I	GTNNAC	2 cut(s)	138, 343
HpyAV	CCTTC	6 cut(s)	271, 349, 401, 409, 573, 628
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	138, 175, 216, 493
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 524, 544
HpyF3I	CTNAG	5 cut(s)	45, 144, 473, 573, 600
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	6 cut(s)	59, 340, 355, 463, 493, 619
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	63, 304, 318, 513
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	218, 228
MalI	GATC	4 cut(s)	65, 306, 320, 515
MboI	GATC	4 cut(s)	63, 304, 318, 513
MboII	GAAGA	3 cut(s)	166, 520, 523
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	5 cut(s)	53, 140, 150, 391, 407
MluCI	AATT	1 cut(s)	176
MlyI	GAGTC	2 cut(s)	353, 494
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	6 cut(s)	182, 460, 468, 571, 574, 609
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	494
MspI	CCGG	6 cut(s)	116, 131, 374, 524, 539, 548
MspR9I	CCNGG	7 cut(s)	6, 116, 117, 374, 482, 524, 540
MvaI	CCWGG	2 cut(s)	6, 482
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	3 cut(s)	167, 524, 544
NciI	CCSGG	5 cut(s)	116, 117, 374, 524, 540
NcoI	CCATGG	2 cut(s)	55, 615
NdeII	GATC	4 cut(s)	63, 304, 318, 513
NlaIII	CATG	6 cut(s)	59, 340, 355, 463, 493, 619
NlaIV	GGNNCC	4 cut(s)	345, 378, 405, 479
NmuCI	GTSAC	2 cut(s)	218, 228
PaqCI	CACCTGC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	295
PfoI	TCCNGGA	1 cut(s)	480
PleI	GAGTC	2 cut(s)	353, 493
PpsI	GAGTC	2 cut(s)	353, 493
PpuMI	RGGWCCY	1 cut(s)	478
Psp124BI	GAGCTC	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	478
Psp6I	CCWGG	2 cut(s)	4, 480
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	2 cut(s)	4, 480
PspN4I	GGNNCC	4 cut(s)	345, 378, 405, 479
PspOMI	GGGCCC	1 cut(s)	403
PspPI	GGNCC	6 cut(s)	96, 343, 403, 404, 478, 619
PspPPI	RGGWCCY	1 cut(s)	478
PstI	CTGCAG	1 cut(s)	218
PstNI	CAGNNNCTG	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	2 cut(s)	437, 641
RsaNI	GTAC	2 cut(s)	436, 640
RseI	CAYNNNNRTG	1 cut(s)	494
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	333
Sau3AI	GATC	4 cut(s)	63, 304, 318, 513
Sau96I	GGNCC	6 cut(s)	96, 343, 403, 404, 478, 619
SchI	GAGTC	2 cut(s)	353, 494
ScrFI	CCNGG	7 cut(s)	6, 116, 117, 374, 482, 524, 540
SduI	GDGCHC	5 cut(s)	53, 140, 150, 391, 407
SfcI	CTRYAG	1 cut(s)	214
SgrAI	CRCCGGYG	1 cut(s)	130
SinI	GGWCC	3 cut(s)	343, 478, 619
SmaI	CCCGGG	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	3 cut(s)	273, 441, 454
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	7 cut(s)	4, 114, 115, 372, 480, 522, 538
StyI	CCWWGG	2 cut(s)	55, 615
TaaI	ACNGT	1 cut(s)	658
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	255
TasI	AATT	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	2 cut(s)	218, 228
Tsp45I	GTSAC	2 cut(s)	218, 228
TspDTI	ATGAA	2 cut(s)	368, 383
TspGWI	ACGGA	1 cut(s)	369
TspMI	CCCGGG	1 cut(s)	115
TspRI	CASTG	1 cut(s)	223
VneI	GTGCAC	1 cut(s)	136
VpaK11BI	GGWCC	3 cut(s)	343, 478, 619
XmaI	CCCGGG	1 cut(s)	115
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.