Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0015488

Physical Location & Seq

Genomic Coordinates Reverse (-)

8728200 .. 8729201

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCCAGGACTCACGATTGGAGACAACATCCCAGACCTTGAAGCTGAAAGCACCCATGGAAAGATCAAGCTCTACGACTACTTGGGTGACAGCTGGGCCATCATTTTCTCCCACCCCGGCGATTTCACGCCGGTTTGCACGACGGAGCTCGGGAAGATGGCGGAGTATTCTCCGAAGTTTCGAGAGAAGGGAGTGAAGCTTGTGGGTTTGTCATGCGACGATGTGCCTTCTCACCTCGAGTGGATCAAGGACATCGAAGCCTACAACTCCGGGTGCAAGGTGGACTACCCGATTCTGGCAGATCCGAAACGAGAGATCATTAAGCAACTTAACATGGTGGAGCCGGATGTCAAGGACTCCTCAGGAAACCCAGTTCCCTCGCGCGCTCTTCACATCGTGGGGCCTGATAAGAAGGTGAAGCTGAGCTTTCTGTACCCGGCGAGCACGGGGCGGAACATGGACGAAGTGGTGAGGGTGTTGGAGTCGCTGCAGAAGGCGAACAAGCACAAGGTGGCAACCCCCGCGAACTGGAAACCGGGGGATCCGGTGGTCATTTCTCCGTCGGTGTCTGAGGAGGAGGCCAAGAAGACGTTCCCTCAGGGCTACAAGACTATGGACCTCCCGTCGAACAAGGGGTACCTCCGCTTCACAGACGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008379 GO:0009269 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0051920 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0097237 GO:0097437 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

220

Amino Acids

24.27

Weight (kDa)

5.98

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48130
fragaria_vesca	FvH4_4g21120 FvH4_4g21120
malus_domestica	MD13G1144500.v1.1
prunus_persica	Prupe.1G109000_v2.0.a1
pyrus_communis	pycom13g12500
rosa_chinensis	RchiOBHm_Chr4g0426681
rosa_laevigata	RLG00000007285
rosa_multiflora	Rmu_sc0001821.1_g000016
rosa_roxburghii	Rroxscaffold_5G00368670
rosa_rugosa	Rorug04G0214200
rosa_samantha	Rh4AG269300 Rh4BG275600 Rh4CG290100 Rh4DG272600
rosa_wichuraiana	Rw4G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	636
AccB1I	GGYRCC	1 cut(s)	636
AccII	CGCG	3 cut(s)	382, 384, 524
AciI	CCGC	4 cut(s)	161, 451, 522, 643
AclWI	GGATC	4 cut(s)	251, 296, 536, 549
AdeI	CACNNNGTG	2 cut(s)	397, 511
AfaI	GTAC	2 cut(s)	434, 638
AfiI	CCNNNNNNNGG	2 cut(s)	295, 528
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	1 cut(s)	41
AhdI	GACNNNNNGTC	1 cut(s)	622
AjiI	CACGTC	1 cut(s)	655
AjnI	CCWGG	1 cut(s)	4
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AleI	CACNNNNGTG	1 cut(s)	653
AloI	GAACNNNNNNTCC	2 cut(s)	357, 389
AluBI	AGCT	7 cut(s)	44, 70, 93, 148, 199, 421, 426
AluI	AGCT	7 cut(s)	44, 70, 93, 148, 199, 421, 426
Alw21I	GWGCWC	2 cut(s)	150, 446
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	4 cut(s)	251, 296, 536, 549
Ama87I	CYCGRG	2 cut(s)	149, 236
AoxI	GGCC	3 cut(s)	96, 401, 579
ApeKI	GCWGC	1 cut(s)	487
Asp700I	GAANNNNTTC	1 cut(s)	590
Asp718I	GGTACC	1 cut(s)	636
AspLEI	GCGC	2 cut(s)	384, 386
AspS9I	GGNCC	3 cut(s)	96, 401, 616
AsuC2I	CCSGG	4 cut(s)	117, 271, 437, 537
AsuHPI	GGTGA	4 cut(s)	98, 224, 427, 481
AvaI	CYCGRG	2 cut(s)	149, 236
AvaII	GGWCC	1 cut(s)	616
AxyI	CCTNAGG	2 cut(s)	361, 597
BamHI	GGATCC	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	636
BanII	GRGCYC	1 cut(s)	150
BarI	GAAGNNNNNNTAC	1 cut(s)	629
BbsI	GAAGAC	1 cut(s)	593
Bbv12I	GWGCWC	2 cut(s)	150, 446
BbvI	GCAGC	1 cut(s)	474
BccI	CCATC	2 cut(s)	107, 151
BciT130I	CCWGG	1 cut(s)	6
BcnI	CCSGG	4 cut(s)	117, 271, 437, 537
BcoDI	GTCTC	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	488
BisI	GCNGC	1 cut(s)	488
BlpI	GCTNAGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	489
Bme1390I	CCNGG	5 cut(s)	6, 117, 271, 437, 537
Bme18I	GGWCC	1 cut(s)	616
BmeRI	GACNNNNNGTC	1 cut(s)	622
BmeT110I	CYCGRG	2 cut(s)	149, 236
BmgBI	CACGTC	1 cut(s)	655
BmgT120I	GGNCC	3 cut(s)	96, 401, 616
BmiI	GGNNCC	4 cut(s)	342, 402, 543, 638
BmrFI	CCNGG	5 cut(s)	6, 117, 271, 437, 537
BmrI	ACTGGG	1 cut(s)	365
BmuI	ACTGGG	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	593
Bpu1102I	GCTNAGC	1 cut(s)	422
BpuMI	CCSGG	4 cut(s)	117, 271, 437, 537
BsaJI	CCNNGG	3 cut(s)	55, 115, 536
BsaWI	WCCGGW	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 528
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	371, 533
Bse21I	CCTNAGG	2 cut(s)	361, 597
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	3 cut(s)	55, 115, 536
BseGI	GGATG	2 cut(s)	27, 352
BseLI	CCNNNNNNNGG	2 cut(s)	295, 528
BseMII	CTCAG	4 cut(s)	375, 413, 561, 611
BseNI	ACTGG	2 cut(s)	371, 533
BsePI	GCGCGC	1 cut(s)	382
BseRI	GAGGAG	3 cut(s)	349, 587, 590
BseXI	GCAGC	1 cut(s)	474
BseYI	CCCAGC	1 cut(s)	93
Bsh1236I	CGCG	3 cut(s)	382, 384, 524
BshFI	GGCC	3 cut(s)	98, 403, 581
BshNI	GGYRCC	1 cut(s)	636
BsiHKAI	GWGCWC	2 cut(s)	150, 446
BsiHKCI	CYCGRG	2 cut(s)	149, 236
BsiSI	CCGG	7 cut(s)	117, 131, 270, 344, 437, 536, 545
BslI	CCNNNNNNNGG	2 cut(s)	295, 528
BsmAI	GTCTC	1 cut(s)	15
BsnI	GGCC	3 cut(s)	98, 403, 581
BsoBI	CYCGRG	2 cut(s)	149, 236
Bsp1286I	GDGCHC	2 cut(s)	150, 446
Bsp143I	GATC	5 cut(s)	63, 243, 301, 315, 541
Bsp1720I	GCTNAGC	1 cut(s)	422
Bsp19I	CCATGG	1 cut(s)	55
BspACI	CCGC	4 cut(s)	161, 451, 522, 643
BspANI	GGCC	3 cut(s)	98, 403, 581
BspCNI	CTCAG	4 cut(s)	374, 414, 562, 610
BspFNI	CGCG	3 cut(s)	382, 384, 524
BspLI	GGNNCC	4 cut(s)	342, 402, 543, 638
BspMAI	CTGCAG	1 cut(s)	492
BspPI	GGATC	4 cut(s)	251, 296, 536, 549
BspQI	GCTCTTC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	636
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	371, 533
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	3 cut(s)	55, 115, 536
BssHII	GCGCGC	1 cut(s)	382
BssMI	GATC	5 cut(s)	63, 243, 301, 315, 541
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	6
Bst6I	CTCTTC	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	384, 442
BstDEI	CTNAG	4 cut(s)	361, 422, 570, 597
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	27, 352
BstFNI	CGCG	3 cut(s)	382, 384, 524
BstHHI	GCGC	2 cut(s)	384, 386
BstKTI	GATC	5 cut(s)	66, 246, 304, 318, 544
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	5 cut(s)	63, 243, 301, 315, 541
BstMWI	GCNNNNNNNGC	1 cut(s)	521
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	5 cut(s)	4, 115, 269, 435, 535
BstSFI	CTRYAG	1 cut(s)	488
BstUI	CGCG	3 cut(s)	382, 384, 524
BstV1I	GCAGC	1 cut(s)	474
BstV2I	GAAGAC	1 cut(s)	593
BstX2I	RGATCY	2 cut(s)	301, 541
BstYI	RGATCY	2 cut(s)	301, 541
Bsu36I	CCTNAGG	2 cut(s)	361, 597
BsuRI	GGCC	3 cut(s)	98, 403, 581
BtgI	CCRYGG	1 cut(s)	55
BtrI	CACGTC	1 cut(s)	655
BtsCI	GGATG	2 cut(s)	27, 352
Cac8I	GCNNGC	2 cut(s)	384, 442
CfoI	GCGC	2 cut(s)	384, 386
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	3 cut(s)	96, 401, 616
Csp6I	GTAC	2 cut(s)	433, 637
CviAII	CATG	4 cut(s)	56, 213, 334, 457
CviQI	GTAC	2 cut(s)	433, 637
DdeI	CTNAG	4 cut(s)	361, 422, 570, 597
DpnI	GATC	5 cut(s)	65, 245, 303, 317, 543
DpnII	GATC	5 cut(s)	63, 243, 301, 315, 541
DraIII	CACNNNGTG	2 cut(s)	397, 511
DriI	GACNNNNNGTC	1 cut(s)	622
Eam1104I	CTCTTC	1 cut(s)	393
Eam1105I	GACNNNNNGTC	1 cut(s)	622
EarI	CTCTTC	1 cut(s)	393
EciI	GGCGGA	2 cut(s)	176, 466
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	616
Eco53kI	GAGCTC	1 cut(s)	148
Eco81I	CCTNAGG	2 cut(s)	361, 597
Eco88I	CYCGRG	2 cut(s)	149, 236
EcoICRI	GAGCTC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	4 cut(s)	59, 216, 337, 460
FaiI	YATR	5 cut(s)	57, 214, 335, 458, 614
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FatI	CATG	4 cut(s)	55, 212, 333, 456
FauI	CCCGC	1 cut(s)	529
Fnu4HI	GCNGC	1 cut(s)	488
FokI	GGATG	2 cut(s)	14, 359
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	488
GlaI	GCGC	2 cut(s)	383, 385
GluI	GCNGC	1 cut(s)	488
GsaI	CCCAGC	1 cut(s)	97
HaeIII	GGCC	3 cut(s)	98, 403, 581
HapII	CCGG	7 cut(s)	117, 131, 270, 344, 437, 536, 545
HhaI	GCGC	2 cut(s)	384, 386
Hin1II	CATG	4 cut(s)	59, 216, 337, 460
Hin6I	GCGC	2 cut(s)	382, 384
HinP1I	GCGC	2 cut(s)	382, 384
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	4 cut(s)	9, 292, 356, 482
HpaII	CCGG	7 cut(s)	117, 131, 270, 344, 437, 536, 545
HphI	GGTGA	4 cut(s)	98, 224, 427, 481
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	3 cut(s)	174, 306, 571
Hpy188III	TCNNGA	4 cut(s)	13, 151, 182, 363
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	4 cut(s)	145, 221, 565, 628
HpyAV	CCTTC	4 cut(s)	181, 237, 406, 487
HpyCH4IV	ACGT	2 cut(s)	590, 654
HpyCH4V	TGCA	3 cut(s)	138, 276, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	521
HpyF3I	CTNAG	4 cut(s)	361, 422, 570, 597
HpySE526I	ACGT	2 cut(s)	590, 654
Hsp92II	CATG	4 cut(s)	59, 216, 337, 460
HspAI	GCGC	2 cut(s)	382, 384
KpnI	GGTACC	1 cut(s)	640
Kzo9I	GATC	5 cut(s)	63, 243, 301, 315, 541
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	2 cut(s)	145, 340
Lsp1109I	GCAGC	1 cut(s)	474
MaeII	ACGT	2 cut(s)	590, 654
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	5 cut(s)	65, 245, 303, 317, 543
MboI	GATC	5 cut(s)	63, 243, 301, 315, 541
MboII	GAAGA	3 cut(s)	166, 380, 598
MflI	RGATCY	2 cut(s)	301, 541
MhlI	GDGCHC	2 cut(s)	150, 446
MlyI	GAGTC	3 cut(s)	3, 350, 491
MmeI	TCCRAC	1 cut(s)	459
MroXI	GAANNNNTTC	1 cut(s)	590
MseI	TTAA	2 cut(s)	321, 330
MslI	CAYNNNNRTG	1 cut(s)	653
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	7 cut(s)	117, 131, 270, 344, 437, 536, 545
MspR9I	CCNGG	5 cut(s)	6, 117, 271, 437, 537
MvaI	CCWGG	1 cut(s)	6
MvnI	CGCG	3 cut(s)	382, 384, 524
MwoI	GCNNNNNNNGC	1 cut(s)	521
NciI	CCSGG	4 cut(s)	117, 271, 437, 537
NcoI	CCATGG	1 cut(s)	55
NdeII	GATC	5 cut(s)	63, 243, 301, 315, 541
NlaIII	CATG	4 cut(s)	59, 216, 337, 460
NlaIV	GGNNCC	4 cut(s)	342, 402, 543, 638
NmuCI	GTSAC	1 cut(s)	86
OliI	CACNNNNGTG	1 cut(s)	653
PaeR7I	CTCGAG	1 cut(s)	236
PauI	GCGCGC	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	590
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	489
PleI	GAGTC	3 cut(s)	3, 350, 490
PpsI	GAGTC	3 cut(s)	3, 350, 490
Psp124BI	GAGCTC	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	4 cut(s)	342, 402, 543, 638
PspPI	GGNCC	3 cut(s)	96, 401, 616
PspXI	VCTCGAGB	1 cut(s)	236
PsrI	GAACNNNNNNTAC	2 cut(s)	620, 652
PstI	CTGCAG	1 cut(s)	492
PsuI	RGATCY	2 cut(s)	301, 541
PteI	GCGCGC	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	93
RsaI	GTAC	2 cut(s)	434, 638
RsaNI	GTAC	2 cut(s)	433, 637
RseI	CAYNNNNRTG	1 cut(s)	653
SacI	GAGCTC	1 cut(s)	150
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	2 cut(s)	321, 330
SatI	GCNGC	1 cut(s)	488
Sau3AI	GATC	5 cut(s)	63, 243, 301, 315, 541
Sau96I	GGNCC	3 cut(s)	96, 401, 616
SchI	GAGTC	3 cut(s)	3, 350, 491
ScrFI	CCNGG	5 cut(s)	6, 117, 271, 437, 537
SduI	GDGCHC	2 cut(s)	150, 446
SfcI	CTRYAG	1 cut(s)	488
Sfr274I	CTCGAG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	616
SlaI	CTCGAG	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SsiI	CCGC	4 cut(s)	161, 451, 522, 643
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	5 cut(s)	4, 115, 269, 435, 535
StyI	CCWWGG	1 cut(s)	55
TaiI	ACGT	2 cut(s)	593, 657
TaqI	TCGA	4 cut(s)	181, 237, 255, 626
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	2 cut(s)	321, 330
Tru9I	TTAA	2 cut(s)	321, 330
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	1 cut(s)	487
Tsp45I	GTSAC	1 cut(s)	86
TspGWI	ACGGA	2 cut(s)	158, 549
VpaK11BI	GGWCC	1 cut(s)	616
XhoI	CTCGAG	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.