RLG00000007285

1-Cys peroxiredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015488
Physical Location & Seq
Reverse (-)
15318851 .. 15319934
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007285

Sequence Viewer

Length: 669 bp
ATGAAGCCAATGCCTGGGCTAACCATTGGTGACACTATCCCCAACCTCGTAGCTGAGAGCACCATAGGAAAGATCAAGCTCCATGACTACATCGGCAATAGCTGGGCGATCGTTTTCTCTCACCCCGGTGATTTCACCCCGGTCTGCACCACCGAGCTTGGGAAAATGGCCGAGTACTCCAAGGTGTTCAAGGAGAAAGGAGTGAAGCTGCTGGGTTTGTCCTGCGATGACCTCTCGTCTCATCTCGAGTGGATCAAGGACATTGAAGCCTACAGTGCCGGGTGCAAGGTGGACTATCCAATTATGGCCGATCCGAAGCGAGAGATCATCAAGCAACTCAACATGGTGGATCCCGAAGAGAAAGACTCCTCCGGCAACAACCTACCTTCCCGCACTCTGCATATTGTTGGCCCTGACAAGAAGGTGGTGTTGAGCTTTTTGTATCCGGCGACCACTGGCCGGAACATGGATGAGGTGGTGAGGGTGCTGGAGTCGCTGCAGAAGGCGAAGAAGCACAAGATTGCTACTCCGGCAAACTGGAAGCCTGGAGACGATGTTGTGATATCTCCGGGTGTGTCGCAGGAGGAGGCAAAAAGGATGTTCCCTCAGGGCTACAAGACCAAGGACCTTCCTTCCAAGAAAGAATACCTGCGCTTTACTAATGTTTGA

Protein Analysis

223

Amino Acids

24.72

Weight (kDa)

8.28

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA PF00578 9 - 143 7.3e-28 AhpC/TSA family
Redoxin PF08534 10 - 156 5.1e-13 Redoxin
1-cysPrx_C PF10417 166 - 202 1.8e-11 C-terminal domain of 1-Cys peroxiredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48130
fragaria_vesca FvH4_4g21120 FvH4_4g21120
malus_domestica MD13G1144500.v1.1
prunus_persica Prupe.1G109000_v2.0.a1
pyrus_communis pycom13g12500
rosa_chinensis RchiOBHm_Chr4g0426681
rosa_laevigata RLG00000007285
rosa_multiflora Rmu_sc0001821.1_g000016
rosa_roxburghii Rroxscaffold_5G00368670
rosa_rugosa Rorug04G0214200
rosa_samantha Rh4AG269300 Rh4BG275600 Rh4CG290100 Rh4DG272600
rosa_wichuraiana Rw4G023360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 657
AccB7I CCANNNNNTGG 1 cut(s) 14
AciI CCGC 1 cut(s) 391
AclWI GGATC 4 cut(s) 260, 305, 344, 357
AcoI YGGCCR 3 cut(s) 168, 306, 457
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 4 cut(s) 14, 159, 459, 466
AgsI TTSAA 2 cut(s) 190, 266
AhdI GACNNNNNGTC 1 cut(s) 235
AjnI CCWGG 2 cut(s) 13, 544
AleI CACNNNNGTG 1 cut(s) 126
AluBI AGCT 6 cut(s) 53, 79, 102, 157, 208, 435
AluI AGCT 6 cut(s) 53, 79, 102, 157, 208, 435
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 243, 543
AlwI GGATC 4 cut(s) 260, 305, 344, 357
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 4 cut(s) 168, 306, 409, 457
ApeKI GCWGC 2 cut(s) 208, 496
AspLEI GCGC 1 cut(s) 654
AspS9I GGNCC 2 cut(s) 410, 625
AsuC2I CCSGG 4 cut(s) 126, 140, 280, 570
AsuHPI GGTGA 5 cut(s) 41, 113, 127, 140, 490
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 625
AxyI CCTNAGG 1 cut(s) 606
BamHI GGATCC 1 cut(s) 349
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 195, 483
BciT130I CCWGG 2 cut(s) 15, 546
BciVI GTATCC 1 cut(s) 453
BcnI CCSGG 4 cut(s) 126, 140, 280, 570
BcoDI GTCTC 2 cut(s) 243, 543
BfmI CTRYAG 2 cut(s) 271, 497
BfuAI ACCTGC 1 cut(s) 657
BfuI GTATCC 1 cut(s) 453
BisI GCNGC 2 cut(s) 209, 497
BlsI GCNGC 2 cut(s) 210, 498
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 6 cut(s) 15, 126, 140, 280, 546, 570
Bme18I GGWCC 1 cut(s) 625
BmeRI GACNNNNNGTC 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 410, 625
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 6 cut(s) 15, 126, 140, 280, 546, 570
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BpmI CTGGAG 2 cut(s) 509, 567
BpuMI CCSGG 4 cut(s) 126, 140, 280, 570
BsaJI CCNNGG 5 cut(s) 14, 124, 138, 180, 621
BsaXI ACNNNNNCTCC 2 cut(s) 540, 570
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 159, 459, 466
Bse1I ACTGG 2 cut(s) 460, 542
Bse21I CCTNAGG 1 cut(s) 606
BseBI CCWGG 2 cut(s) 15, 546
BseDI CCNNGG 5 cut(s) 14, 124, 138, 180, 621
BseGI GGATG 2 cut(s) 475, 603
BseLI CCNNNNNNNGG 4 cut(s) 14, 159, 459, 466
BseMII CTCAG 2 cut(s) 45, 620
BseNI ACTGG 2 cut(s) 460, 542
BseRI GAGGAG 2 cut(s) 358, 599
BseXI GCAGC 2 cut(s) 195, 483
BseYI CCCAGC 2 cut(s) 102, 211
BsgI GTGCAG 1 cut(s) 130
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 4 cut(s) 170, 308, 411, 459
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 8 cut(s) 126, 140, 279, 372, 446, 460, 530, 569
BslI CCNNNNNNNGG 4 cut(s) 14, 159, 459, 466
BsmAI GTCTC 2 cut(s) 243, 543
BsmBI CGTCTC 2 cut(s) 243, 543
BsnI GGCC 4 cut(s) 170, 308, 411, 459
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 6 cut(s) 72, 108, 252, 310, 324, 349
BspACI CCGC 1 cut(s) 391
BspANI GGCC 4 cut(s) 170, 308, 411, 459
BspCNI CTCAG 2 cut(s) 46, 619
BspLI GGNNCC 1 cut(s) 351
BspMAI CTGCAG 1 cut(s) 501
BspMI ACCTGC 1 cut(s) 657
BspPI GGATC 4 cut(s) 260, 305, 344, 357
BsrI ACTGG 2 cut(s) 460, 542
BssECI CCNNGG 5 cut(s) 14, 124, 138, 180, 621
BssMI GATC 6 cut(s) 72, 108, 252, 310, 324, 349
BssT1I CCWWGG 2 cut(s) 180, 621
Bst2UI CCWGG 2 cut(s) 15, 546
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 54, 606
BstF5I GGATG 2 cut(s) 475, 603
BstHHI GCGC 1 cut(s) 654
BstKTI GATC 6 cut(s) 75, 111, 255, 313, 327, 352
BstMAI GTCTC 2 cut(s) 243, 543
BstMBI GATC 6 cut(s) 72, 108, 252, 310, 324, 349
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 3 cut(s) 275, 493, 530
BstNI CCWGG 2 cut(s) 15, 546
BstSCI CCNGG 6 cut(s) 13, 124, 138, 278, 544, 568
BstSFI CTRYAG 2 cut(s) 271, 497
BstV1I GCAGC 2 cut(s) 195, 483
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
Bsu36I CCTNAGG 1 cut(s) 606
BsuI GTATCC 1 cut(s) 453
BsuRI GGCC 4 cut(s) 170, 308, 411, 459
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 2 cut(s) 475, 603
BtsIMutI CAGTG 2 cut(s) 280, 453
BveI ACCTGC 1 cut(s) 657
CfoI GCGC 1 cut(s) 654
Cfr13I GGNCC 2 cut(s) 410, 625
Csp6I GTAC 1 cut(s) 175
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 3 cut(s) 83, 343, 466
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 54, 606
DpnI GATC 6 cut(s) 74, 110, 254, 312, 326, 351
DpnII GATC 6 cut(s) 72, 108, 252, 310, 324, 349
DriI GACNNNNNGTC 1 cut(s) 235
EaeI YGGCCR 3 cut(s) 168, 306, 457
Eam1104I CTCTTC 1 cut(s) 351
Eam1105I GACNNNNNGTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 2 cut(s) 180, 621
Eco32I GATATC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 625
Eco81I CCTNAGG 1 cut(s) 606
Eco88I CYCGRG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 625
EcoRII CCWGG 2 cut(s) 13, 544
EcoRV GATATC 1 cut(s) 564
EcoT14I CCWWGG 2 cut(s) 180, 621
ErhI CCWWGG 2 cut(s) 180, 621
Esp3I CGTCTC 2 cut(s) 243, 543
FaeI CATG 3 cut(s) 86, 346, 469
FaiI YATR 6 cut(s) 65, 84, 305, 344, 402, 467
FatI CATG 3 cut(s) 82, 342, 465
FauI CCCGC 1 cut(s) 398
Fnu4HI GCNGC 2 cut(s) 209, 497
FokI GGATG 2 cut(s) 482, 610
Fsp4HI GCNGC 2 cut(s) 209, 497
GlaI GCGC 1 cut(s) 653
GluI GCNGC 2 cut(s) 209, 497
GsaI CCCAGC 2 cut(s) 106, 215
GsuI CTGGAG 2 cut(s) 509, 567
HaeIII GGCC 4 cut(s) 170, 308, 411, 459
HapII CCGG 8 cut(s) 126, 140, 279, 372, 446, 460, 530, 569
HhaI GCGC 1 cut(s) 654
Hin1II CATG 3 cut(s) 86, 346, 469
Hin6I GCGC 1 cut(s) 652
HinP1I GCGC 1 cut(s) 652
HinfI GANTC 2 cut(s) 365, 491
HpaII CCGG 8 cut(s) 126, 140, 279, 372, 446, 460, 530, 569
HphI GGTGA 5 cut(s) 41, 113, 127, 140, 490
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 315
Hpy188III TCNNGA 2 cut(s) 245, 353
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 5 cut(s) 396, 415, 496, 638, 642
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 4 cut(s) 147, 285, 400, 499
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 493, 530
HpyF3I CTNAG 2 cut(s) 54, 606
Hsp92II CATG 3 cut(s) 86, 346, 469
HspAI GCGC 1 cut(s) 652
Kzo9I GATC 6 cut(s) 72, 108, 252, 310, 324, 349
LmnI GCTCC 1 cut(s) 84
Lsp1109I GCAGC 2 cut(s) 195, 483
MaeIII GTNAC 1 cut(s) 29
MalI GATC 6 cut(s) 74, 110, 254, 312, 326, 351
MboI GATC 6 cut(s) 72, 108, 252, 310, 324, 349
MboII GAAGA 2 cut(s) 368, 520
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 1 cut(s) 300
MlyI GAGTC 2 cut(s) 359, 500
MnlI CCTC 8 cut(s) 56, 242, 379, 466, 474, 577, 580, 615
MslI CAYNNNNRTG 1 cut(s) 126
MspI CCGG 8 cut(s) 126, 140, 279, 372, 446, 460, 530, 569
MspR9I CCNGG 6 cut(s) 15, 126, 140, 280, 546, 570
MvaI CCWGG 2 cut(s) 15, 546
MwoI GCNNNNNNNGC 3 cut(s) 275, 493, 530
NciI CCSGG 4 cut(s) 126, 140, 280, 570
NdeII GATC 6 cut(s) 72, 108, 252, 310, 324, 349
NlaIII CATG 3 cut(s) 86, 346, 469
NlaIV GGNNCC 1 cut(s) 351
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 29
OliI CACNNNNGTG 1 cut(s) 126
PaeR7I CTCGAG 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 14
PkrI GCNGC 2 cut(s) 210, 498
Ple19I CGATCG 1 cut(s) 111
PleI GAGTC 2 cut(s) 359, 499
PpsI GAGTC 2 cut(s) 359, 499
PpuMI RGGWCCY 1 cut(s) 625
Psp5II RGGWCCY 1 cut(s) 625
Psp6I CCWGG 2 cut(s) 13, 544
PspFI CCCAGC 2 cut(s) 102, 211
PspGI CCWGG 2 cut(s) 13, 544
PspN4I GGNNCC 1 cut(s) 351
PspPI GGNCC 2 cut(s) 410, 625
PspPPI RGGWCCY 1 cut(s) 625
PstI CTGCAG 1 cut(s) 501
PsuI RGATCY 1 cut(s) 349
PvuI CGATCG 1 cut(s) 111
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 126
SatI GCNGC 2 cut(s) 209, 497
Sau3AI GATC 6 cut(s) 72, 108, 252, 310, 324, 349
Sau96I GGNCC 2 cut(s) 410, 625
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 2 cut(s) 359, 500
ScrFI CCNGG 6 cut(s) 15, 126, 140, 280, 546, 570
SduI GDGCHC 1 cut(s) 62
SfcI CTRYAG 2 cut(s) 271, 497
Sfr274I CTCGAG 1 cut(s) 245
SinI GGWCC 1 cut(s) 625
SlaI CTCGAG 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 1 cut(s) 300
SsiI CCGC 1 cut(s) 391
StyD4I CCNGG 6 cut(s) 13, 124, 138, 278, 544, 568
StyI CCWWGG 2 cut(s) 180, 621
TaaI ACNGT 1 cut(s) 275
TaqI TCGA 1 cut(s) 246
TasI AATT 1 cut(s) 300
TatI WGTACW 1 cut(s) 174
TscAI CASTG 2 cut(s) 280, 460
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 2 cut(s) 208, 496
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 280, 460
Van91I CCANNNNNTGG 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 625
XhoI CTCGAG 1 cut(s) 245
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.