Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015488

Physical Location & Seq

Genomic Coordinates Forward (+)

52116637 .. 52117689

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39569

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCAACAGCCCACTACTCTTTATATAACTCTCTCCTTCAACCCCTCTCTCTGCACCACAAAGAAAGCCACACAAAAAAAAACTCTTCGATTCTGCTGTCACAACTGTTCTGTCTTCGTTACTTTACTCTCTGTGAAGATGCCTGGGCTAACGATTGGAGACACTATCCCCAACGTCGAAGCTGAGAGCACCATAGGAAAGATCAAGCTCCATGACTACATCGGCAATAGCTGGGCCATCGTTTTCTCTCACCCCGGTGATTTCACCCCGGTCTGCACCACCGAGCTTGGGAAGATGGCCGAATACTCCAAGGTGTTCGAGGAGAAAGGAGTGAAGCTGCTGGGTTTGTCCTGCGACGACGTCTCGTCTCATCTCGAGTGGATCAAGGACATTGAAGCCTACAGTGCCGGGTGCAAGGTGGACTATCCAATTATGGCCGATCCGAAGCGAGAGATCATCAAGCAACTCAACATGGTGGATCCCGAAGAGAAAGACTCCTCCGGCAACAACCTACCTTCCCGCGCTCTGCATATTGTTGGCCCTGACAAGAAGGTGGTGTTGAGCTTTTTGTATCCGGCGACCACTGGCCGGGACATGGATGAGGTGGTGAGGGTGCTGGAGTCGCTGCAGAAGGCGAAGAAGCACAAGATTGCTACTCCGGCAAACTGGAAGCCCGGAGACGATGTTGTGATATCTCCGGGTGTGTCGCAGGAGGAGGCTGAAAGGATGTTCCCTCAGGGTTACAAGACCAAGGACCTTCCTTCCAAGAAAGAGTACCTGCGCTTTACTAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008379 GO:0009269 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0051920 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0097237 GO:0097437 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

265

Amino Acids

29.55

Weight (kDa)

7.57

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	52 - 186	2.2e-28	AhpC/TSA family
Redoxin	PF08534	53 - 201	1.8e-12	Redoxin
1-cysPrx_C	PF10417	209 - 244	5.4e-11	C-terminal domain of 1-Cys peroxiredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48130
fragaria_vesca	FvH4_4g21120 FvH4_4g21120
malus_domestica	MD13G1144500.v1.1
prunus_persica	Prupe.1G109000_v2.0.a1
pyrus_communis	pycom13g12500
rosa_chinensis	RchiOBHm_Chr4g0426681
rosa_laevigata	RLG00000007285
rosa_multiflora	Rmu_sc0001821.1_g000016
rosa_roxburghii	Rroxscaffold_5G00368670
rosa_rugosa	Rorug04G0214200
rosa_samantha	Rh4AG269300 Rh4BG275600 Rh4CG290100 Rh4DG272600
rosa_wichuraiana	Rw4G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	363
Acc36I	ACCTGC	1 cut(s)	786
AccII	CGCG	1 cut(s)	522
AciI	CCGC	1 cut(s)	520
AclWI	GGATC	4 cut(s)	389, 434, 473, 486
AcoI	YGGCCR	3 cut(s)	297, 435, 586
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	1 cut(s)	776
AfiI	CCNNNNNNNGG	3 cut(s)	288, 588, 595
AgsI	TTSAA	2 cut(s)	40, 395
AhdI	GACNNNNNGTC	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	142
AleI	CACNNNNGTG	1 cut(s)	255
AluBI	AGCT	6 cut(s)	182, 208, 231, 286, 337, 564
AluI	AGCT	6 cut(s)	182, 208, 231, 286, 337, 564
Alw21I	GWGCWC	1 cut(s)	191
Alw26I	GTCTC	4 cut(s)	153, 367, 372, 672
AlwI	GGATC	4 cut(s)	389, 434, 473, 486
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	5 cut(s)	234, 297, 435, 538, 586
ApeKI	GCWGC	2 cut(s)	337, 625
AspLEI	GCGC	2 cut(s)	524, 783
AspS9I	GGNCC	3 cut(s)	234, 539, 754
AsuC2I	CCSGG	6 cut(s)	255, 269, 409, 590, 675, 699
AsuHPI	GGTGA	4 cut(s)	242, 256, 269, 619
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	754
AxyI	CCTNAGG	1 cut(s)	735
BamHI	GGATCC	1 cut(s)	478
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	324, 612
BccI	CCATC	2 cut(s)	245, 289
BciT130I	CCWGG	1 cut(s)	144
BciVI	GTATCC	1 cut(s)	582
BcnI	CCSGG	6 cut(s)	255, 269, 409, 590, 675, 699
BcoDI	GTCTC	4 cut(s)	153, 367, 372, 672
BfmI	CTRYAG	2 cut(s)	400, 626
BfuAI	ACCTGC	1 cut(s)	786
BfuI	GTATCC	1 cut(s)	582
BisI	GCNGC	2 cut(s)	338, 626
BlsI	GCNGC	2 cut(s)	339, 627
Bme1390I	CCNGG	7 cut(s)	144, 255, 269, 409, 590, 675, 699
Bme18I	GGWCC	1 cut(s)	754
BmeRI	GACNNNNNGTC	1 cut(s)	364
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	3 cut(s)	234, 539, 754
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	7 cut(s)	144, 255, 269, 409, 590, 675, 699
BmsI	GCATC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
BpmI	CTGGAG	1 cut(s)	638
BpuMI	CCSGG	6 cut(s)	255, 269, 409, 590, 675, 699
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	5 cut(s)	143, 253, 267, 309, 750
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	3 cut(s)	288, 588, 595
Bse1I	ACTGG	2 cut(s)	589, 671
Bse21I	CCTNAGG	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	5 cut(s)	143, 253, 267, 309, 750
BseGI	GGATG	2 cut(s)	604, 732
BseLI	CCNNNNNNNGG	3 cut(s)	288, 588, 595
BseMII	CTCAG	2 cut(s)	174, 749
BseNI	ACTGG	2 cut(s)	589, 671
BseRI	GAGGAG	3 cut(s)	335, 487, 728
BseXI	GCAGC	2 cut(s)	324, 612
BseYI	CCCAGC	2 cut(s)	231, 340
BsgI	GTGCAG	2 cut(s)	37, 259
Bsh1236I	CGCG	1 cut(s)	522
BshFI	GGCC	5 cut(s)	236, 299, 437, 540, 588
BsiHKAI	GWGCWC	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	9 cut(s)	255, 269, 408, 501, 575, 589, 659, 675, 698
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	3 cut(s)	288, 588, 595
BsmAI	GTCTC	4 cut(s)	153, 367, 372, 672
BsmBI	CGTCTC	3 cut(s)	367, 372, 672
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	5 cut(s)	236, 299, 437, 540, 588
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	5 cut(s)	201, 381, 439, 453, 478
BspACI	CCGC	1 cut(s)	520
BspANI	GGCC	5 cut(s)	236, 299, 437, 540, 588
BspCNI	CTCAG	2 cut(s)	175, 748
BspFNI	CGCG	1 cut(s)	522
BspLI	GGNNCC	1 cut(s)	480
BspMAI	CTGCAG	1 cut(s)	630
BspMI	ACCTGC	1 cut(s)	786
BspPI	GGATC	4 cut(s)	389, 434, 473, 486
BsrI	ACTGG	2 cut(s)	589, 671
BssECI	CCNNGG	5 cut(s)	143, 253, 267, 309, 750
BssMI	GATC	5 cut(s)	201, 381, 439, 453, 478
BssNI	GRCGYC	1 cut(s)	360
BssT1I	CCWWGG	2 cut(s)	309, 750
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	107, 404
Bst6I	CTCTTC	2 cut(s)	90, 480
BstACI	GRCGYC	1 cut(s)	360
BstDEI	CTNAG	2 cut(s)	183, 735
BstF5I	GGATG	2 cut(s)	604, 732
BstFNI	CGCG	1 cut(s)	522
BstHHI	GCGC	2 cut(s)	524, 783
BstKTI	GATC	5 cut(s)	204, 384, 442, 456, 481
BstMAI	GTCTC	4 cut(s)	153, 367, 372, 672
BstMBI	GATC	5 cut(s)	201, 381, 439, 453, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	404, 622, 659
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	7 cut(s)	142, 253, 267, 407, 588, 673, 697
BstSFI	CTRYAG	2 cut(s)	400, 626
BstUI	CGCG	1 cut(s)	522
BstV1I	GCAGC	2 cut(s)	324, 612
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
Bsu36I	CCTNAGG	1 cut(s)	735
BsuI	GTATCC	1 cut(s)	582
BsuRI	GGCC	5 cut(s)	236, 299, 437, 540, 588
BtsCI	GGATG	2 cut(s)	604, 732
BtsIMutI	CAGTG	2 cut(s)	409, 582
BveI	ACCTGC	1 cut(s)	786
CfoI	GCGC	2 cut(s)	524, 783
Cfr13I	GGNCC	3 cut(s)	234, 539, 754
Csp6I	GTAC	1 cut(s)	775
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	3 cut(s)	212, 472, 595
CviQI	GTAC	1 cut(s)	775
DdeI	CTNAG	2 cut(s)	183, 735
DpnI	GATC	5 cut(s)	203, 383, 441, 455, 480
DpnII	GATC	5 cut(s)	201, 381, 439, 453, 478
DriI	GACNNNNNGTC	1 cut(s)	364
EaeI	YGGCCR	3 cut(s)	297, 435, 586
Eam1104I	CTCTTC	2 cut(s)	90, 480
Eam1105I	GACNNNNNGTC	1 cut(s)	364
EarI	CTCTTC	2 cut(s)	90, 480
Eco130I	CCWWGG	2 cut(s)	309, 750
Eco32I	GATATC	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	754
Eco81I	CCTNAGG	1 cut(s)	735
Eco88I	CYCGRG	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	693
EcoT14I	CCWWGG	2 cut(s)	309, 750
ErhI	CCWWGG	2 cut(s)	309, 750
Esp3I	CGTCTC	3 cut(s)	367, 372, 672
FaeI	CATG	3 cut(s)	215, 475, 598
FaiI	YATR	8 cut(s)	24, 26, 194, 213, 434, 473, 531, 596
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	3 cut(s)	211, 471, 594
FauI	CCCGC	1 cut(s)	527
Fnu4HI	GCNGC	2 cut(s)	338, 626
FokI	GGATG	2 cut(s)	611, 739
Fsp4HI	GCNGC	2 cut(s)	338, 626
GlaI	GCGC	2 cut(s)	523, 782
GluI	GCNGC	2 cut(s)	338, 626
GsaI	CCCAGC	2 cut(s)	235, 344
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	5 cut(s)	236, 299, 437, 540, 588
HapII	CCGG	9 cut(s)	255, 269, 408, 501, 575, 589, 659, 675, 698
HhaI	GCGC	2 cut(s)	524, 783
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	3 cut(s)	215, 475, 598
Hin6I	GCGC	2 cut(s)	522, 781
HinP1I	GCGC	2 cut(s)	522, 781
HinfI	GANTC	3 cut(s)	90, 494, 620
HpaII	CCGG	9 cut(s)	255, 269, 408, 501, 575, 589, 659, 675, 698
HphI	GGTGA	4 cut(s)	242, 256, 269, 619
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	1 cut(s)	444
Hpy188III	TCNNGA	2 cut(s)	374, 482
Hpy8I	GTNNAC	1 cut(s)	421
Hpy99I	CGWCG	3 cut(s)	179, 359, 362
HpyAV	CCTTC	6 cut(s)	46, 525, 544, 625, 767, 771
HpyCH4III	ACNGT	2 cut(s)	107, 404
HpyCH4IV	ACGT	2 cut(s)	174, 360
HpyCH4V	TGCA	6 cut(s)	4, 54, 276, 414, 529, 628
HpyF10VI	GCNNNNNNNGC	3 cut(s)	404, 622, 659
HpyF3I	CTNAG	2 cut(s)	183, 735
HpySE526I	ACGT	2 cut(s)	174, 360
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	3 cut(s)	215, 475, 598
HspAI	GCGC	2 cut(s)	522, 781
Kzo9I	GATC	5 cut(s)	201, 381, 439, 453, 478
LmnI	GCTCC	1 cut(s)	213
Lsp1109I	GCAGC	2 cut(s)	324, 612
LweI	GCATC	1 cut(s)	129
MaeII	ACGT	2 cut(s)	174, 360
MaeIII	GTNAC	3 cut(s)	98, 118, 740
MalI	GATC	5 cut(s)	203, 383, 441, 455, 480
MboI	GATC	5 cut(s)	201, 381, 439, 453, 478
MboII	GAAGA	6 cut(s)	77, 106, 148, 304, 497, 649
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	1 cut(s)	429
MlyI	GAGTC	2 cut(s)	488, 629
MnlI	CCTC	8 cut(s)	55, 313, 508, 595, 603, 706, 709, 744
MslI	CAYNNNNRTG	1 cut(s)	255
MspI	CCGG	9 cut(s)	255, 269, 408, 501, 575, 589, 659, 675, 698
MspR9I	CCNGG	7 cut(s)	144, 255, 269, 409, 590, 675, 699
MvaI	CCWGG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	522
MwoI	GCNNNNNNNGC	3 cut(s)	404, 622, 659
NciI	CCSGG	6 cut(s)	255, 269, 409, 590, 675, 699
NdeII	GATC	5 cut(s)	201, 381, 439, 453, 478
NlaIII	CATG	3 cut(s)	215, 475, 598
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	98
OliI	CACNNNNGTG	1 cut(s)	255
PaeR7I	CTCGAG	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	90
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	339, 627
PleI	GAGTC	2 cut(s)	488, 628
PpsI	GAGTC	2 cut(s)	488, 628
PpuMI	RGGWCCY	1 cut(s)	754
Psp5II	RGGWCCY	1 cut(s)	754
Psp6I	CCWGG	1 cut(s)	142
PspFI	CCCAGC	2 cut(s)	231, 340
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	480
PspPI	GGNCC	3 cut(s)	234, 539, 754
PspPPI	RGGWCCY	1 cut(s)	754
PstI	CTGCAG	1 cut(s)	630
PsuI	RGATCY	1 cut(s)	478
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	1 cut(s)	776
RsaNI	GTAC	1 cut(s)	775
RseI	CAYNNNNRTG	1 cut(s)	255
SatI	GCNGC	2 cut(s)	338, 626
Sau3AI	GATC	5 cut(s)	201, 381, 439, 453, 478
Sau96I	GGNCC	3 cut(s)	234, 539, 754
SchI	GAGTC	2 cut(s)	488, 629
ScrFI	CCNGG	7 cut(s)	144, 255, 269, 409, 590, 675, 699
SduI	GDGCHC	1 cut(s)	191
SfaNI	GCATC	1 cut(s)	129
SfcI	CTRYAG	2 cut(s)	400, 626
Sfr274I	CTCGAG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	754
SlaI	CTCGAG	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	1 cut(s)	429
SsiI	CCGC	1 cut(s)	520
StyD4I	CCNGG	7 cut(s)	142, 253, 267, 407, 588, 673, 697
StyI	CCWWGG	2 cut(s)	309, 750
TaaI	ACNGT	2 cut(s)	107, 404
TaiI	ACGT	2 cut(s)	177, 363
TaqI	TCGA	4 cut(s)	88, 177, 318, 375
TasI	AATT	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	90
TscAI	CASTG	2 cut(s)	409, 589
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	2 cut(s)	337, 625
Tsp45I	GTSAC	1 cut(s)	98
TspRI	CASTG	2 cut(s)	409, 589
Tth111I	GACNNNGTC	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	754
XhoI	CTCGAG	1 cut(s)	374
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.