Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0015488

Physical Location & Seq

Genomic Coordinates Forward (+)

54888826 .. 54889736

Gene Structure 911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG290100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCCTGGGCTAACGATTGGAGACACTATCCCCAACGTCGAAGCTGAGAGCACCATAGGAAAGATCAAGCTCCATGACTACATCGGCAATAGCTGGGCCATCGTTTTCTCTCACCCCGGTGATTTCACCCCGGTCTGCACCACCGAGCTTGGGAAGATGGCCGAATACTCCAAGGTGTTCGAGGAGAAAGGAGTGAAGCTGCTGGGTTTGTCCTGCGACGACGTCTCGTCTCATCTCGAGTGGATCAAGGACATTGAAGCCTACAGTGCCGGGTGCAAGGTGGACTATCCAATTATGGCCGATCCGAAGCGAGAGATCATCAAGCAACTCAACATGGTGGATCCCGAAGAGAAAGACTCCTCCGGCAACAACCTACCTTCCCGCGCTCTGCATATTGTTGGCCCTGACAAGAAGGTGGTGTTGAGCTTTTTGTATCCGGCGACTACTGGCCGGGACATGGATGAGGTGGTGAGGGTGCTGGAGTCGCTGCAGAAGGCAAAGAAGCACAAGATTGCTACTCCGGCAAACTGGAAGCCCGGAGACGATGTTGTGATATCTCCGGGTGTGTCGCAGGAGGAGGCTGAAAGGATGTTCCCTCAGGGCTACAAGACCAAGGACCTTCCTTCCAAGAAAGAGTACCTGCGCTTTACGAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008379 GO:0009269 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0051920 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0097237 GO:0097437 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

1-cysPrx_C AhpC-TSA

Protein Analysis

219

Amino Acids

24.34

Weight (kDa)

5.61

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	6 - 140	1.3e-28	AhpC/TSA family
Redoxin	PF08534	7 - 155	1.1e-12	Redoxin
1-cysPrx_C	PF10417	163 - 198	4e-11	C-terminal domain of 1-Cys peroxiredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48130
fragaria_vesca	FvH4_4g21120 FvH4_4g21120
malus_domestica	MD13G1144500.v1.1
prunus_persica	Prupe.1G109000_v2.0.a1
pyrus_communis	pycom13g12500
rosa_chinensis	RchiOBHm_Chr4g0426681
rosa_laevigata	RLG00000007285
rosa_multiflora	Rmu_sc0001821.1_g000016
rosa_roxburghii	Rroxscaffold_5G00368670
rosa_rugosa	Rorug04G0214200
rosa_samantha	Rh4AG269300 Rh4BG275600 Rh4CG290100 Rh4DG272600
rosa_wichuraiana	Rw4G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
Acc36I	ACCTGC	1 cut(s)	648
AccII	CGCG	1 cut(s)	384
AciI	CCGC	1 cut(s)	382
AclWI	GGATC	4 cut(s)	251, 296, 335, 348
AcoI	YGGCCR	3 cut(s)	159, 297, 448
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	2 cut(s)	150, 457
AgsI	TTSAA	1 cut(s)	257
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	4
AleI	CACNNNNGTG	1 cut(s)	117
AluBI	AGCT	6 cut(s)	44, 70, 93, 148, 199, 426
AluI	AGCT	6 cut(s)	44, 70, 93, 148, 199, 426
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	4 cut(s)	15, 229, 234, 534
AlwI	GGATC	4 cut(s)	251, 296, 335, 348
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	5 cut(s)	96, 159, 297, 400, 448
ApeKI	GCWGC	2 cut(s)	199, 487
AspLEI	GCGC	2 cut(s)	386, 645
AspS9I	GGNCC	3 cut(s)	96, 401, 616
AsuC2I	CCSGG	6 cut(s)	117, 131, 271, 452, 537, 561
AsuHPI	GGTGA	4 cut(s)	104, 118, 131, 481
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	616
AxyI	CCTNAGG	1 cut(s)	597
BamHI	GGATCC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	186, 474
BccI	CCATC	2 cut(s)	107, 151
BciT130I	CCWGG	1 cut(s)	6
BciVI	GTATCC	1 cut(s)	444
BcnI	CCSGG	6 cut(s)	117, 131, 271, 452, 537, 561
BcoDI	GTCTC	4 cut(s)	15, 229, 234, 534
BfmI	CTRYAG	2 cut(s)	262, 488
BfuAI	ACCTGC	1 cut(s)	648
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	2 cut(s)	200, 488
BlsI	GCNGC	2 cut(s)	201, 489
Bme1390I	CCNGG	7 cut(s)	6, 117, 131, 271, 452, 537, 561
Bme18I	GGWCC	1 cut(s)	616
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	3 cut(s)	96, 401, 616
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	7 cut(s)	6, 117, 131, 271, 452, 537, 561
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BpmI	CTGGAG	1 cut(s)	500
BpuMI	CCSGG	6 cut(s)	117, 131, 271, 452, 537, 561
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	5 cut(s)	5, 115, 129, 171, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 457
Bse1I	ACTGG	2 cut(s)	451, 533
Bse21I	CCTNAGG	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	5 cut(s)	5, 115, 129, 171, 612
BseGI	GGATG	2 cut(s)	466, 594
BseLI	CCNNNNNNNGG	2 cut(s)	150, 457
BseMII	CTCAG	2 cut(s)	36, 611
BseNI	ACTGG	2 cut(s)	451, 533
BseRI	GAGGAG	3 cut(s)	197, 349, 590
BseXI	GCAGC	2 cut(s)	186, 474
BseYI	CCCAGC	2 cut(s)	93, 202
BsgI	GTGCAG	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	5 cut(s)	98, 161, 299, 402, 450
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	9 cut(s)	117, 131, 270, 363, 437, 451, 521, 537, 560
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	2 cut(s)	150, 457
BsmAI	GTCTC	4 cut(s)	15, 229, 234, 534
BsmBI	CGTCTC	3 cut(s)	229, 234, 534
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	5 cut(s)	98, 161, 299, 402, 450
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	5 cut(s)	63, 243, 301, 315, 340
BspACI	CCGC	1 cut(s)	382
BspANI	GGCC	5 cut(s)	98, 161, 299, 402, 450
BspCNI	CTCAG	2 cut(s)	37, 610
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	342
BspMAI	CTGCAG	1 cut(s)	492
BspMI	ACCTGC	1 cut(s)	648
BspPI	GGATC	4 cut(s)	251, 296, 335, 348
BsrI	ACTGG	2 cut(s)	451, 533
BssECI	CCNNGG	5 cut(s)	5, 115, 129, 171, 612
BssMI	GATC	5 cut(s)	63, 243, 301, 315, 340
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	2 cut(s)	171, 612
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	342
BstACI	GRCGYC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	45, 597
BstF5I	GGATG	2 cut(s)	466, 594
BstFNI	CGCG	1 cut(s)	384
BstHHI	GCGC	2 cut(s)	386, 645
BstKTI	GATC	5 cut(s)	66, 246, 304, 318, 343
BstMAI	GTCTC	4 cut(s)	15, 229, 234, 534
BstMBI	GATC	5 cut(s)	63, 243, 301, 315, 340
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 484, 521
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	7 cut(s)	4, 115, 129, 269, 450, 535, 559
BstSFI	CTRYAG	2 cut(s)	262, 488
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	186, 474
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu36I	CCTNAGG	1 cut(s)	597
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	5 cut(s)	98, 161, 299, 402, 450
BtsCI	GGATG	2 cut(s)	466, 594
BtsIMutI	CAGTG	1 cut(s)	271
BveI	ACCTGC	1 cut(s)	648
CfoI	GCGC	2 cut(s)	386, 645
Cfr13I	GGNCC	3 cut(s)	96, 401, 616
Csp6I	GTAC	1 cut(s)	637
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	3 cut(s)	74, 334, 457
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	2 cut(s)	45, 597
DpnI	GATC	5 cut(s)	65, 245, 303, 317, 342
DpnII	GATC	5 cut(s)	63, 243, 301, 315, 340
DriI	GACNNNNNGTC	1 cut(s)	226
EaeI	YGGCCR	3 cut(s)	159, 297, 448
Eam1104I	CTCTTC	1 cut(s)	342
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	2 cut(s)	171, 612
Eco32I	GATATC	1 cut(s)	555
Eco47I	GGWCC	1 cut(s)	616
Eco81I	CCTNAGG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	555
EcoT14I	CCWWGG	2 cut(s)	171, 612
ErhI	CCWWGG	2 cut(s)	171, 612
Esp3I	CGTCTC	3 cut(s)	229, 234, 534
FaeI	CATG	3 cut(s)	77, 337, 460
FaiI	YATR	6 cut(s)	56, 75, 296, 335, 393, 458
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	3 cut(s)	73, 333, 456
FauI	CCCGC	1 cut(s)	389
Fnu4HI	GCNGC	2 cut(s)	200, 488
FokI	GGATG	2 cut(s)	473, 601
Fsp4HI	GCNGC	2 cut(s)	200, 488
GlaI	GCGC	2 cut(s)	385, 644
GluI	GCNGC	2 cut(s)	200, 488
GsaI	CCCAGC	2 cut(s)	97, 206
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	5 cut(s)	98, 161, 299, 402, 450
HapII	CCGG	9 cut(s)	117, 131, 270, 363, 437, 451, 521, 537, 560
HhaI	GCGC	2 cut(s)	386, 645
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	77, 337, 460
Hin6I	GCGC	2 cut(s)	384, 643
HinP1I	GCGC	2 cut(s)	384, 643
HinfI	GANTC	2 cut(s)	356, 482
HpaII	CCGG	9 cut(s)	117, 131, 270, 363, 437, 451, 521, 537, 560
HphI	GGTGA	4 cut(s)	104, 118, 131, 481
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	2 cut(s)	236, 344
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	3 cut(s)	41, 221, 224
HpyAV	CCTTC	5 cut(s)	387, 406, 487, 629, 633
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	2 cut(s)	36, 222
HpyCH4V	TGCA	4 cut(s)	138, 276, 391, 490
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 484, 521
HpyF3I	CTNAG	2 cut(s)	45, 597
HpySE526I	ACGT	2 cut(s)	36, 222
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	77, 337, 460
HspAI	GCGC	2 cut(s)	384, 643
Kzo9I	GATC	5 cut(s)	63, 243, 301, 315, 340
LmnI	GCTCC	1 cut(s)	75
Lsp1109I	GCAGC	2 cut(s)	186, 474
MaeII	ACGT	2 cut(s)	36, 222
MalI	GATC	5 cut(s)	65, 245, 303, 317, 342
MboI	GATC	5 cut(s)	63, 243, 301, 315, 340
MboII	GAAGA	2 cut(s)	166, 359
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	350, 491
MnlI	CCTC	7 cut(s)	175, 370, 457, 465, 568, 571, 606
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	9 cut(s)	117, 131, 270, 363, 437, 451, 521, 537, 560
MspR9I	CCNGG	7 cut(s)	6, 117, 131, 271, 452, 537, 561
MvaI	CCWGG	1 cut(s)	6
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	3 cut(s)	266, 484, 521
NciI	CCSGG	6 cut(s)	117, 131, 271, 452, 537, 561
NdeII	GATC	5 cut(s)	63, 243, 301, 315, 340
NlaIII	CATG	3 cut(s)	77, 337, 460
NlaIV	GGNNCC	1 cut(s)	342
OliI	CACNNNNGTG	1 cut(s)	117
PaeR7I	CTCGAG	1 cut(s)	236
PflFI	GACNNNGTC	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	201, 489
PleI	GAGTC	2 cut(s)	350, 490
PpsI	GAGTC	2 cut(s)	350, 490
PpuMI	RGGWCCY	1 cut(s)	616
Psp5II	RGGWCCY	1 cut(s)	616
Psp6I	CCWGG	1 cut(s)	4
PspFI	CCCAGC	2 cut(s)	93, 202
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	3 cut(s)	96, 401, 616
PspPPI	RGGWCCY	1 cut(s)	616
PstI	CTGCAG	1 cut(s)	492
PsuI	RGATCY	1 cut(s)	340
PsyI	GACNNNGTC	1 cut(s)	221
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
RseI	CAYNNNNRTG	1 cut(s)	117
SatI	GCNGC	2 cut(s)	200, 488
Sau3AI	GATC	5 cut(s)	63, 243, 301, 315, 340
Sau96I	GGNCC	3 cut(s)	96, 401, 616
SchI	GAGTC	2 cut(s)	350, 491
ScrFI	CCNGG	7 cut(s)	6, 117, 131, 271, 452, 537, 561
SduI	GDGCHC	1 cut(s)	53
SfcI	CTRYAG	2 cut(s)	262, 488
Sfr274I	CTCGAG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	616
SlaI	CTCGAG	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	291
SsiI	CCGC	1 cut(s)	382
StyD4I	CCNGG	7 cut(s)	4, 115, 129, 269, 450, 535, 559
StyI	CCWWGG	2 cut(s)	171, 612
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	2 cut(s)	39, 225
TaqI	TCGA	3 cut(s)	39, 180, 237
TasI	AATT	1 cut(s)	291
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	2 cut(s)	199, 487
TspRI	CASTG	1 cut(s)	271
Tth111I	GACNNNGTC	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	616
XhoI	CTCGAG	1 cut(s)	236
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.