AT1G48850

Chorismate synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
18064905 .. 18068154
3250 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48850.3

Sequence Viewer

Length: 1311 bp
ATGGCGTCGTCTTCTCTCACTTCGAAATCCATTCTCGGATCCACCAAACTCGGTTCTTCTTCTCTTCCCTCGGAGCTCCGTCGTCTCTCTTCTCCCGCCGTTCAGATCTCTCTCCGTACCCAAACCAGGAAGAACTTCCAGATACAAGCTACTGGAAGTTCATATGGGACTCATTTTCGAGTTTCAACTTTTGGAGAATCACATGGAGGAGGAGTTGGTTGTATCATTGATGGTTGTCCTCCTCGTATTCCACTTACTGAATCTGATTTGCAATTCGATCTCGATAGAAGGAGGCCTGGTCAGAGCAGGATCACAACTCCTAGAAAAGAGACTGATACTTGCCGGATATCGTCTGGAGTCTCTGAAGGAATGACGACAGGAACACCTATCCATGTGTTTGTACCAAACACAGATCAGAGAGGACTTGATTACAGTGAAATGTCGGTTGCCTATAGACCATCGCATGCTGATGCAACTTATGACATGAAGTATGGTGTCAGATCAGTGCAGGGTGGAGGAAGATCTTCAGCTAGAGAGACCATTGGAAGAGTTGCTCCTGGAGCTTTGGCCAAGAAAATTTTGAAGCAATTTGCAGGAACTGAGATTCTTGCCTATGTCTCGCAAGTTCACCATGTTGTACTTCCAGAAGAATTGGTAGACCACGAGAATTTAACACTCGAACAGATAGAAAATAACATTGTCAGATGCCCTAATCCCGAGTATGCGGAAAAGATGATAGCTGCGATTGATGCTGTCAGGACAAAAGGGAACTCTGTTGGTGGTGTTGTGACCTGCATTGTTCGGAATGCTCCACGTGGGCTTGGTACACCGGTTTTCGATAAACTTGAAGCAGAACTGGCAAAAGCTTGTATGTCGCTACCTGCAACTAAGGGATTTGAGTTTGGAAGCGGCTTTGCAGGTACCTTTTTGACTGGTCTTGAACACAATGATGAGTTCTATACCGATGAAAATGGAAGAATACGTACCAGAACCAACCGATCTGGTGGAATTCAGGGAGGGATCTCAAATGGTGAAATAATAAACATGAGAGTAGCCTTCAAGCCAACATCAACAATTGGAAGGAAGCAAAATACGGTAACCAGAGACAAGGTAGAAACCGAAATGATTGCGCGTGGTCGTCATGATCCTTGTGTTGTTCCACGAGCTGTGCCAATGGTGGAAGCAATGGTGGCTCTAGTTCTTGTGGATCAATTGATGGCGCAATACGCACAATGCCATTTGTTTCCAATAAATCCAGAGTTGCAGGAACCTCTCCAGATAGAGCAGCCGCAAAATGCTACTGCTTTGTAA

Protein Analysis

436

Amino Acids

47.32

Weight (kDa)

8.37

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chorismate_synt PF01264 59 - 364 4.1e-115 Chorismate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 800, 889, 908
Acc65I GGTACC 1 cut(s) 920
AccB1I GGYRCC 1 cut(s) 920
AccI GTMKAC 1 cut(s) 657
AccII CGCG 1 cut(s) 1132
AciI CCGC 4 cut(s) 96, 725, 909, 1289
AclWI GGATC 6 cut(s) 33, 46, 317, 1028, 1139, 1215
AcoI YGGCCR 1 cut(s) 567
AcsI RAATTY 3 cut(s) 576, 667, 1008
AcuI CTGAAG 2 cut(s) 384, 510
AcvI CACGTG 1 cut(s) 815
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 6 cut(s) 118, 402, 639, 826, 922, 985
AfiI CCNNNNNNNGG 1 cut(s) 126
AgeI ACCGGT 1 cut(s) 829
AgsI TTSAA 5 cut(s) 186, 583, 848, 941, 1060
AjnI CCWGG 3 cut(s) 125, 295, 556
AluBI AGCT 7 cut(s) 76, 149, 530, 563, 740, 866, 1166
AluI AGCT 7 cut(s) 76, 149, 530, 563, 740, 866, 1166
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 6 cut(s) 89, 323, 364, 530, 622, 1098
AlwI GGATC 6 cut(s) 33, 46, 317, 1028, 1139, 1215
AlwNI CAGNNNCTG 1 cut(s) 599
Ama87I CYCGRG 1 cut(s) 716
AoxI GGCC 2 cut(s) 293, 567
ApeKI GCWGC 2 cut(s) 740, 1285
ApoI RAATTY 3 cut(s) 576, 667, 1008
AsiGI ACCGGT 1 cut(s) 829
Asp700I GAANNNNTTC 2 cut(s) 134, 523
Asp718I GGTACC 1 cut(s) 920
AspLEI GCGC 2 cut(s) 1132, 1222
AsuHPI GGTGA 2 cut(s) 620, 1043
AsuII TTCGAA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 716
BaeI ACNNNNGTAYC 2 cut(s) 816, 849
BalI TGGCCA 1 cut(s) 569
BamHI GGATCC 1 cut(s) 38
BanI GGYRCC 1 cut(s) 920
BanII GRGCYC 1 cut(s) 78
BarI GAAGNNNNNNTAC 2 cut(s) 967, 999
BauI CACGAG 2 cut(s) 662, 1161
BbrPI CACGTG 1 cut(s) 815
BbsI GAAGAC 1 cut(s) 3
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 727, 1297
BccI CCATC 3 cut(s) 224, 466, 1210
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 1109, 1143
BciT130I CCWGG 3 cut(s) 127, 297, 558
BcoDI GTCTC 6 cut(s) 89, 323, 364, 530, 622, 1098
BfaI CTAG 3 cut(s) 321, 531, 1196
BfmI CTRYAG 1 cut(s) 451
BfuAI ACCTGC 3 cut(s) 800, 889, 908
BglII AGATCT 2 cut(s) 105, 521
BisI GCNGC 4 cut(s) 741, 910, 1286, 1289
BlsI GCNGC 4 cut(s) 742, 911, 1287, 1290
Bme1390I CCNGG 3 cut(s) 127, 297, 558
BmeT110I CYCGRG 1 cut(s) 716
BmiI GGNNCC 3 cut(s) 40, 922, 1269
BmrFI CCNGG 3 cut(s) 127, 297, 558
BmsI GCATC 3 cut(s) 460, 695, 739
BpiI GAAGAC 1 cut(s) 3
BpmI CTGGAG 3 cut(s) 375, 579, 1259
Bpu14I TTCGAA 1 cut(s) 23
BsaAI YACGTR 2 cut(s) 815, 983
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 530
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 829
BsaXI ACNNNNNCTCC 4 cut(s) 198, 228, 283, 313
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse118I RCCGGY 1 cut(s) 829
Bse1I ACTGG 3 cut(s) 157, 861, 937
Bse3DI GCAATG 1 cut(s) 1191
BseBI CCWGG 3 cut(s) 127, 297, 558
BseDI CCNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 1191
BseMII CTCAG 1 cut(s) 591
BseNI ACTGG 3 cut(s) 157, 861, 937
BseRI GAGGAG 3 cut(s) 222, 225, 231
BseXI GCAGC 2 cut(s) 727, 1297
BsgI GTGCAG 1 cut(s) 527
Bsh1236I CGCG 1 cut(s) 1132
BshFI GGCC 2 cut(s) 295, 569
BshNI GGYRCC 1 cut(s) 920
BshTI ACCGGT 1 cut(s) 829
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 716
BsiSI CCGG 2 cut(s) 343, 830
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 6 cut(s) 89, 323, 364, 530, 622, 1098
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 2 cut(s) 295, 569
Bso31I GGTCTC 1 cut(s) 530
BsoBI CYCGRG 1 cut(s) 716
Bsp119I TTCGAA 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 78
BspACI CCGC 4 cut(s) 96, 725, 909, 1289
BspANI GGCC 2 cut(s) 295, 569
BspCNI CTCAG 1 cut(s) 592
BspFNI CGCG 1 cut(s) 1132
BspHI TCATGA 1 cut(s) 1141
BspLI GGNNCC 3 cut(s) 40, 922, 1269
BspMI ACCTGC 3 cut(s) 800, 889, 908
BspPI GGATC 6 cut(s) 33, 46, 317, 1028, 1139, 1215
BspT104I TTCGAA 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 920
BspTNI GGTCTC 1 cut(s) 530
BsrDI GCAATG 1 cut(s) 1191
BsrFI RCCGGY 1 cut(s) 829
BsrI ACTGG 3 cut(s) 157, 861, 937
BssAI RCCGGY 1 cut(s) 829
BssECI CCNNGG 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 2 cut(s) 662, 1161
Bst2BI CACGAG 2 cut(s) 662, 1161
Bst2UI CCWGG 3 cut(s) 127, 297, 558
Bst4CI ACNGT 2 cut(s) 434, 1096
Bst6I CTCTTC 3 cut(s) 69, 94, 541
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 2 cut(s) 815, 983
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 2 cut(s) 600, 888
BstEII GGTNACC 1 cut(s) 1096
BstFNI CGCG 1 cut(s) 1132
BstHHI GCGC 2 cut(s) 1132, 1222
BstMAI GTCTC 6 cut(s) 89, 323, 364, 530, 622, 1098
BstMWI GCNNNNNNNGC 5 cut(s) 560, 749, 857, 1190, 1226
BstNI CCWGG 3 cut(s) 127, 297, 558
BstNSI RCATGY 1 cut(s) 467
BstPI GGTNACC 1 cut(s) 1096
BstSCI CCNGG 3 cut(s) 125, 295, 556
BstSFI CTRYAG 1 cut(s) 451
BstSNI TACGTA 1 cut(s) 983
BstUI CGCG 1 cut(s) 1132
BstV1I GCAGC 2 cut(s) 727, 1297
BstV2I GAAGAC 1 cut(s) 3
BstX2I RGATCY 4 cut(s) 38, 105, 521, 1020
BstYI RGATCY 4 cut(s) 38, 105, 521, 1020
BsuRI GGCC 2 cut(s) 295, 569
BtgZI GCGATG 1 cut(s) 444
BtsIMutI CAGTG 2 cut(s) 439, 510
BveI ACCTGC 3 cut(s) 800, 889, 908
Cac8I GCNNGC 1 cut(s) 465
CaiI CAGNNNCTG 1 cut(s) 599
CciI TCATGA 1 cut(s) 1141
CfoI GCGC 2 cut(s) 1132, 1222
Cfr10I RCCGGY 1 cut(s) 829
Csp6I GTAC 6 cut(s) 117, 401, 638, 825, 921, 984
CspAI ACCGGT 1 cut(s) 829
CviAII CATG 7 cut(s) 203, 392, 464, 484, 632, 1045, 1142
CviQI GTAC 6 cut(s) 117, 401, 638, 825, 921, 984
DdeI CTNAG 2 cut(s) 600, 888
EaeI YGGCCR 1 cut(s) 567
Eam1104I CTCTTC 3 cut(s) 69, 94, 541
EarI CTCTTC 3 cut(s) 69, 94, 541
Ecl136II GAGCTC 1 cut(s) 76
Eco105I TACGTA 1 cut(s) 983
Eco147I AGGCCT 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 530
Eco32I GATATC 1 cut(s) 348
Eco53kI GAGCTC 1 cut(s) 76
Eco57I CTGAAG 2 cut(s) 384, 510
Eco72I CACGTG 1 cut(s) 815
Eco88I CYCGRG 1 cut(s) 716
Eco91I GGTNACC 1 cut(s) 1096
EcoICRI GAGCTC 1 cut(s) 76
EcoO65I GGTNACC 1 cut(s) 1096
EcoRI GAATTC 1 cut(s) 1008
EcoRII CCWGG 3 cut(s) 125, 295, 556
EcoRV GATATC 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 7 cut(s) 206, 395, 467, 487, 635, 1048, 1145
FaqI GGGAC 1 cut(s) 181
FatI CATG 7 cut(s) 202, 391, 463, 483, 631, 1044, 1141
FauI CCCGC 1 cut(s) 103
FauNDI CATATG 1 cut(s) 163
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 4 cut(s) 741, 910, 1286, 1289
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 4 cut(s) 741, 910, 1286, 1289
FspBI CTAG 3 cut(s) 321, 531, 1196
GlaI GCGC 2 cut(s) 1131, 1221
GluI GCNGC 4 cut(s) 741, 910, 1286, 1289
GsuI CTGGAG 3 cut(s) 375, 579, 1259
HaeIII GGCC 2 cut(s) 295, 569
HapII CCGG 2 cut(s) 343, 830
HhaI GCGC 2 cut(s) 1132, 1222
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 206, 395, 467, 487, 635, 1048, 1145
Hin6I GCGC 2 cut(s) 1130, 1220
HinP1I GCGC 2 cut(s) 1130, 1220
HindIII AAGCTT 1 cut(s) 864
HinfI GANTC 5 cut(s) 169, 197, 260, 357, 604
HpaII CCGG 2 cut(s) 343, 830
HphI GGTGA 2 cut(s) 620, 1043
Hpy166II GTNNAC 3 cut(s) 628, 658, 827
Hpy8I GTNNAC 3 cut(s) 628, 658, 827
Hpy99I CGWCG 2 cut(s) 10, 84
HpyAV CCTTC 4 cut(s) 282, 359, 1066, 1074
HpyCH4III ACNGT 2 cut(s) 434, 1096
HpyCH4IV ACGT 2 cut(s) 814, 982
HpyCH4V TGCA 8 cut(s) 271, 473, 508, 593, 795, 884, 917, 1264
HpyF10VI GCNNNNNNNGC 5 cut(s) 560, 749, 857, 1190, 1226
HpyF3I CTNAG 2 cut(s) 600, 888
HpySE526I ACGT 2 cut(s) 814, 982
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 206, 395, 467, 487, 635, 1048, 1145
HspAI GCGC 2 cut(s) 1130, 1220
KpnI GGTACC 1 cut(s) 924
LmnI GCTCC 5 cut(s) 73, 81, 559, 560, 814
Lsp1109I GCAGC 2 cut(s) 727, 1297
LweI GCATC 3 cut(s) 460, 695, 739
MaeI CTAG 3 cut(s) 321, 531, 1196
MaeII ACGT 2 cut(s) 814, 982
MaeIII GTNAC 2 cut(s) 787, 1096
MfeI CAATTG 2 cut(s) 1074, 1211
MflI RGATCY 4 cut(s) 38, 105, 521, 1020
MhlI GDGCHC 1 cut(s) 78
MlsI TGGCCA 1 cut(s) 569
MluCI AATT 8 cut(s) 272, 576, 587, 650, 667, 1008, 1074, 1211
MluNI TGGCCA 1 cut(s) 569
MlyI GAGTC 2 cut(s) 163, 366
Mox20I TGGCCA 1 cut(s) 569
MroXI GAANNNNTTC 2 cut(s) 134, 523
MscI TGGCCA 1 cut(s) 569
MseI TTAA 1 cut(s) 671
MslI CAYNNNNRTG 2 cut(s) 468, 948
Msp20I TGGCCA 1 cut(s) 569
MspI CCGG 2 cut(s) 343, 830
MspR9I CCNGG 3 cut(s) 127, 297, 558
MunI CAATTG 2 cut(s) 1074, 1211
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 3 cut(s) 127, 297, 558
MvnI CGCG 1 cut(s) 1132
MwoI GCNNNNNNNGC 5 cut(s) 560, 749, 857, 1190, 1226
NdeI CATATG 1 cut(s) 163
NlaIII CATG 7 cut(s) 206, 395, 467, 487, 635, 1048, 1145
NlaIV GGNNCC 3 cut(s) 40, 922, 1269
NmuCI GTSAC 1 cut(s) 787
NspI RCATGY 1 cut(s) 467
NspV TTCGAA 1 cut(s) 23
PaeI GCATGC 1 cut(s) 467
PagI TCATGA 1 cut(s) 1141
PceI AGGCCT 1 cut(s) 295
PctI GAATGC 1 cut(s) 811
PdmI GAANNNNTTC 2 cut(s) 134, 523
PfeI GAWTC 3 cut(s) 197, 260, 604
PfoI TCCNGGA 1 cut(s) 556
PinAI ACCGGT 1 cut(s) 829
PkrI GCNGC 4 cut(s) 742, 911, 1287, 1290
PleI GAGTC 2 cut(s) 163, 365
PmaCI CACGTG 1 cut(s) 815
PmlI CACGTG 1 cut(s) 815
PpsI GAGTC 2 cut(s) 163, 365
Ppu21I YACGTR 2 cut(s) 815, 983
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 3 cut(s) 125, 295, 556
PspCI CACGTG 1 cut(s) 815
PspEI GGTNACC 1 cut(s) 1096
PspGI CCWGG 3 cut(s) 125, 295, 556
PspN4I GGNNCC 3 cut(s) 40, 922, 1269
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 4 cut(s) 38, 105, 521, 1020
RsaI GTAC 6 cut(s) 118, 402, 639, 826, 922, 985
RsaNI GTAC 6 cut(s) 117, 401, 638, 825, 921, 984
RseI CAYNNNNRTG 2 cut(s) 468, 948
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 671
SatI GCNGC 4 cut(s) 741, 910, 1286, 1289
SchI GAGTC 2 cut(s) 163, 366
ScrFI CCNGG 3 cut(s) 127, 297, 558
SduI GDGCHC 1 cut(s) 78
SfaNI GCATC 3 cut(s) 460, 695, 739
SfcI CTRYAG 1 cut(s) 451
SfuI TTCGAA 1 cut(s) 23
SmiMI CAYNNNNRTG 2 cut(s) 468, 948
SnaBI TACGTA 1 cut(s) 983
SphI GCATGC 1 cut(s) 467
Sse9I AATT 8 cut(s) 272, 576, 587, 650, 667, 1008, 1074, 1211
SseBI AGGCCT 1 cut(s) 295
SsiI CCGC 4 cut(s) 96, 725, 909, 1289
SspMI CTAG 3 cut(s) 321, 531, 1196
SstI GAGCTC 1 cut(s) 78
StuI AGGCCT 1 cut(s) 295
StyD4I CCNGG 3 cut(s) 125, 295, 556
TaaI ACNGT 2 cut(s) 434, 1096
TaiI ACGT 2 cut(s) 817, 985
TaqI TCGA 6 cut(s) 23, 178, 276, 282, 678, 837
TasI AATT 8 cut(s) 272, 576, 587, 650, 667, 1008, 1074, 1211
TatI WGTACW 1 cut(s) 637
TauI GCSGC 2 cut(s) 912, 1291
TfiI GAWTC 3 cut(s) 197, 260, 604
Tru1I TTAA 1 cut(s) 671
Tru9I TTAA 1 cut(s) 671
TscAI CASTG 2 cut(s) 439, 510
TseFI GTSAC 1 cut(s) 787
TseI GCWGC 2 cut(s) 740, 1285
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 3 cut(s) 150, 500, 981
TspGWI ACGGA 2 cut(s) 68, 104
TspRI CASTG 2 cut(s) 439, 510
XapI RAATTY 3 cut(s) 576, 667, 1008
XceI RCATGY 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 657
XmnI GAANNNNTTC 2 cut(s) 134, 523
XspI CTAG 3 cut(s) 321, 531, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.