Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008413

Physical Location & Seq

Genomic Coordinates Reverse (-)

42456369 .. 42457032

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0307500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCATATATGGAGCAAAACATTCGAAAGCGGAACCAGGTCGAGCCAACTCAAACAGAAACCCCCAAGAAGAGCAAAACAGGAGGCGCTAATGGGCCTCGGAGGGCTTCTGCTTACATTAATACTTCTATAAGAATAGATTATCAGCTAGACATTTGTAAGGATTACAAACAAACTGGTTTTTGTGGGTATGGAGGAAGTTGCAAATTTTCACATGATCGTGGGGACTACGAGTCTGGTTGGCAGTTGGAGAAGGAGAGGGATGAAGAAAGGAAGAGAAGATTAGGTCTCGATGAGTTTCGTGATTCGGAGCAAACTGAAGCAGAAGAAGAAGAAGAAGTTGACAATGAGCATGCATGTTCCATCTGCAAGAAACCTTTTGTTGTTCATGTTGTAACTAAATGCAAACACCACTTCTGTTTGCGTTGTGCACTAAAGCATGATCAAAAGAAGAAGAAGTGCTTTGTTTGCCATAAGCCGACTAATGGTTCATTCATCCCATTCGATGCTGTTTTTAAGAGAGGGAAAAGAAGGCATGGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004107 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010181 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019438 GO:0019752 GO:0031974 GO:0031981 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048037 GO:0050662 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Chorismate_synt

Protein Analysis

181

Amino Acids

21.06

Weight (kDa)

8.91

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	50 - 73	1.3e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-C3HC4_3	PF13920	117 - 162	8.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48850 AT1G48850 AT1G48850
fragaria_vesca	FvH4_7g19670 FvH4_7g19670
malus_domestica	MD01G1108900.v1.1 MD07G1175200.v1.1
prunus_persica	Prupe.2G214400_v2.0.a1 Prupe.2G214400_v2.0.a1 Prupe.2G214400_v2.0.a1
pyrus_communis	pycom07g16960
rosa_chinensis	RchiOBHm_Chr1g0363491
rosa_laevigata	RLG00000027561
rosa_multiflora	Rmu_sc0008820.1_g000005
rosa_roxburghii	Rroxscaffold_4G00293120
rosa_rugosa	Rorug01G0307400 Rorug01G0307500 Rorug01G0307600
rosa_samantha	Rh1AG316600 Rh1BG279900 Rh1CG296100 Rh1DG311200
rosa_wichuraiana	Rw1G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	339
AfiI	CCNNNNNNNGG	1 cut(s)	485
AhdI	GACNNNNNGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	1 cut(s)	293
Alw44I	GTGCAC	1 cut(s)	429
AoxI	GGCC	1 cut(s)	95
ApaLI	GTGCAC	1 cut(s)	429
ApeKI	GCWGC	1 cut(s)	540
ApoI	RAATTY	1 cut(s)	206
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	95
AsuII	TTCGAA	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	433
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	1 cut(s)	371
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	1 cut(s)	38
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	149
BfoI	RGCGCY	1 cut(s)	90
BisI	GCNGC	1 cut(s)	541
BlsI	GCNGC	1 cut(s)	542
Bme1390I	CCNGG	1 cut(s)	38
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	496
Bpu14I	TTCGAA	1 cut(s)	25
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	2 cut(s)	268, 495
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseNI	ACTGG	1 cut(s)	181
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	1 cut(s)	527
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	97
Bso31I	GGTCTC	1 cut(s)	293
Bsp119I	TTCGAA	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	2 cut(s)	217, 442
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	35
BspQI	GCTCTTC	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	25
BspTNI	GGTCTC	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	2 cut(s)	217, 442
Bst2UI	CCWGG	1 cut(s)	38
Bst6I	CTCTTC	2 cut(s)	65, 269
BstBI	TTCGAA	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	268, 495
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	220, 445
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	217, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	468
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	2 cut(s)	356, 360
BstSCI	CCNGG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	527
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	268, 495
Cac8I	GCNNGC	1 cut(s)	354
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	95
CsiI	ACCWGGT	1 cut(s)	36
CviAII	CATG	6 cut(s)	215, 353, 357, 389, 440, 536
CviJI	RGCY	6 cut(s)	46, 97, 107, 148, 478, 540
CviKI_1	RGCY	6 cut(s)	46, 97, 107, 148, 478, 540
DpnI	GATC	2 cut(s)	219, 444
DpnII	GATC	2 cut(s)	217, 442
DriI	GACNNNNNGTC	1 cut(s)	232
Eam1104I	CTCTTC	2 cut(s)	65, 269
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	2 cut(s)	65, 269
Eco31I	GGTCTC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	358
FaeI	CATG	6 cut(s)	218, 356, 360, 392, 443, 539
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	6 cut(s)	214, 352, 356, 388, 439, 535
FbaI	TGATCA	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	541
FokI	GGATG	2 cut(s)	275, 482
Fsp4HI	GCNGC	1 cut(s)	541
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	541
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	6 cut(s)	218, 356, 360, 392, 443, 539
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	2 cut(s)	233, 305
Hpy166II	GTNNAC	2 cut(s)	343, 431
Hpy188I	TCNGA	2 cut(s)	102, 310
Hpy188III	TCNNGA	2 cut(s)	290, 302
Hpy8I	GTNNAC	2 cut(s)	343, 431
HpyAV	CCTTC	2 cut(s)	247, 525
HpyCH4V	TGCA	5 cut(s)	204, 356, 369, 405, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	468
Hsp92II	CATG	6 cut(s)	218, 356, 360, 392, 443, 539
HspAI	GCGC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	217, 442
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	2 cut(s)	13, 310
LpnPI	CCDG	5 cut(s)	23, 50, 66, 162, 222
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	1 cut(s)	496
MabI	ACCWGGT	1 cut(s)	36
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	2 cut(s)	219, 444
MboI	GATC	2 cut(s)	217, 442
MhlI	GDGCHC	1 cut(s)	433
MluCI	AATT	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	6 cut(s)	77, 96, 108, 188, 252, 515
Mph1103I	ATGCAT	1 cut(s)	358
MseI	TTAA	2 cut(s)	120, 516
MslI	CAYNNNNRTG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	468
NdeII	GATC	2 cut(s)	217, 442
NlaIII	CATG	6 cut(s)	218, 356, 360, 392, 443, 539
NlaIV	GGNNCC	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	2 cut(s)	356, 360
NspV	TTCGAA	1 cut(s)	25
PaeI	GCATGC	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	1 cut(s)	542
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PshBI	ATTAAT	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	120, 516
SatI	GCNGC	1 cut(s)	541
Sau3AI	GATC	2 cut(s)	217, 442
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	433
SetI	ASST	4 cut(s)	42, 150, 289, 379
SexAI	ACCWGGT	1 cut(s)	36
SfaNI	GCATC	1 cut(s)	496
SfuI	TTCGAA	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	219
SphI	GCATGC	1 cut(s)	356
Sse9I	AATT	1 cut(s)	206
SsiI	CCGC	1 cut(s)	31
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	36
TaqI	TCGA	4 cut(s)	25, 42, 291, 504
TasI	AATT	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	2 cut(s)	120, 516
Tru9I	TTAA	2 cut(s)	120, 516
TseI	GCWGC	1 cut(s)	540
TspDTI	ATGAA	4 cut(s)	279, 377, 480, 484
VneI	GTGCAC	1 cut(s)	429
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	2 cut(s)	356, 360
XspI	CTAG	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.