Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008413

Physical Location & Seq

Genomic Coordinates Forward (+)

42457713 .. 42465700

Gene Structure 7988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0307600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4053 bp

ATGGGCGAACATGAAGGGTGGGCACAGCCAGCAAGTGGGCTATTGCCGAATGGCCTATTGCCCAATGAAGCCGCGTCCGTGATGCGAGTGCTGGATTCCGAGCGATGGACCAAGGCGGAGGAGAGAACTGCAGAGCTTATTGCCTGCATTCAGCCCAATCCACCCTCAGAAGAGCGCCGAAATGCCGTTGCCGATTATGTGCAGCGGCTTATCATGAAGTGCTTCCCATGCCAGGTGTTCACTTTTGGGTCTGTGCCCCTCAAGACTTATTTGCCTGATGGAGATATTGACCTCACAGCCTTCAGCAAGACTCAAAGTTTGAAAGACTCATGGGCACATCAGGTTCGTGATATGCTGGAGAATGAGGAGAAGAATGAGAATGCTGAATTTCGTGTCAAAGAGGTTCAATACATTCAAGCTGAAGTAAAGATAATCAAGTGCCTTGTGGAAAACATTGTAGTAGACATATCCTTTAATCAGCTGGGAGGCTTGTGCACCCTTTGTTTCCTTGAGGAGGTCGATCATCTCATAAATCAGAATCATTTGTTCAAGCGTAGTATTATACTGATAAAGGCCTGGTGTTATTATGAGAGCCGAATACTGGGCGCTCACCATGGACTTATCTCCACCTACGCTTTGGAAACATTGGTTTTATACATTTTTCATGTTTTCAACAACTCCTTTGCTGGACCACTTGAGGTCTTGTATCGCTTTCTAGAGTTCTTTAGTAAGTTTGACTGGGAGAACTTTTGTGTTAGCTTATGGGGTCCTGTGCCCATTAGTTCTCTTCCAGATGTAACTGCTGAACCTCCTCGAAAAGATGGTGGAGAGTTACTACTAAGCAAATTGTTTCTTGATGCGTGTAGCACAGTGTATGCTGTCTTCCCTGGCGGTCAAGAAAATCAGGGTCAAGCTTTTGTTTCCAAACATTTTAATGTTATTGATCCTTTGAGAATCAACAACAACCTTGGACGTAGTGTTAGTAAAGGTAACTTCTTTAGGATACGCAGTGCATTTGCATTTGGGGCTAAAAGGCTGGCCAGGTTGCTTGATTGTTCAAAGGAGGATCTATGTTTCGAAGTAAATCAGTTTTTTCTCAACACTTGGGATAGACATGGAAGTGGTCATCGACCTGATGCACCATGTAATGATCTTAGGCGCTTGCGACTTTCAAATGCAGACCACTTACATGGGTCTGAGAATTGCAGGAACAACTTAGGCGGCAAAAAAAACGAAAGTTCCTCTGGTCGAGATACTCAAGGTGAGGGAAAACATGGTTCACTTGGTGTTTCCTCTCAGCATGGTAGTTATCCTATAGAAAACATATCACGGAACAGTGTTTTTTCTAGTGTAACTGATGGTCAAAGCCAAAAGAATCATGTGAACATGAACATGGGGAGGGCCTCTGATCAGATTAGAAAGGAAATCAATCCTGACCTGGGTGCGCATGTGGATAAAGGTCAGAGAAAACCGGATAGCTTGGTTAATGACCTTCACGGGAGGTTTCTTTTTGCAAGGACACGCTCTAGTCCTGAGCTTACTGATACATACAGTGAAGTTCCCTCTCAAGGTCGGCGGAATAAGGCACCAGAGAGTGGGAAAAGCCAAACTTATTCCACGAGGTTGGATAATAGCAGGAGGAAGAACCTTGAGGCTGATAGTTTAGCAAGCCACAGAATTAGATCTTCAGCTGATGATCCTTCATCTGCTAACCATATTTCATCCCATCAAAGCCTTGATGTTGTGGTTGATTCAAATAATAGCTACCAGGATGAATCTGGTTCGAGTACTGTTGCTGACGATTTTCCGTCTATTTCGGGGACACAAGGGATGCACCAAGAGGAGCAAGATCTTGTTAACATGATGGCATCGTCTGCAGCTCATGGTTTCAATGGACAGGTTCATCTTCCCCTGAATTTGGGTTCCGGTCATTTACCATTTCCAATCCCACCTTCTGTTCTTGCTTCGATGGGATATGGTCAGAGGAATATGGGTGGCATGTTTCCCACAAATTTTCCCTTGATGGAGAGTCCTTGGGGAGCAAATATGCATTTTCCGCAAGGTGTTGTCCCGTCACCTTTAACTCATTATTTCCCTGGCATGGGGTTGACATCAAATCCTGAAGAATCGGTGGAACCTGGTAATGAAGATTTTGGTTCTGTGGAGATGAACTCAAGTGAAGCTGATCAAGATTTCTGGCACAACCAGGAGAGGGGATCTACTAGTGGATTTGATCATGATAATGGAGGTTTGGAAATGCTTGAGGCAGATGATAGGCAACAGTCAACCTCAGCTGGTTATAACTCCCATCCTTCATCTCGGATAGGCGCTGCTGTAAGTTCTATGCGAGTTCAACAAAAGTCGCCTAAAGAAAGCCGAGATTCAATGAGGGAAGATCATGTTGATGATTTTCAGTATCAAGATAACCGAGGAAATGAGGTATACTTTGATGACCGAGTGAGTTCTAGGTCGTTGTCGGCCAATTATACTAGTTCTGCAAGAAGCAAGACCTCCTCTGAGAGTTCTTGGGAAGGATCATCAGCAAAAGTGTCAAAGTCAACAAGGGAAAAACGGGGCAGAAAAGCTGCTCTGTCAACAGCTCCATCTACCTCATATGGGAAAGGTAAGAGTGTGTCTGAACATTCTTCTACTCAGGCAGATGATGAAAACAAAGATTGGAATCTGCCAACAACTTTAGGTGCTGAAATGGTAGAAAGAAGCACACTATCTCAACCTGTTGCTTCCTCGCATGTTCCAAGACATCAAATGCCTGGTTTTGAACCATCTCAAACAAGTGGATCAGATTCGCTGATGCCTTTCCCAGTTGTCTTAGGGCCTGGCTCACGACAGAGAGCTACAAATGATTCTGGTGCTACCTACACATTTTATCCTACGGGACCTCCAGTTCCATTTGTTACAATGCTACCATATTACAATTTCCCAGCCGAGGCAGGAACATCAGATGTATCAAGCCAATTCAGTAGGGAAGATGGACCTGAAAGTGATTCTGGTCAGAACTTTGATCCAGCTGAAGGAATTGGTCAACCTGAGTTAAGAATTTCTAACTCCATGGGAAGGGTTGCTCCTATTGAGCCTTCTGAGTATAAATCTGACATCCTCCACAGTGACTTTGCCAGCCATTATCAGAATTTGCAGTATGGACGGTTATGCCAAAATCCTCGGCATTCTCCACCTATGGTCTATCCTTCACCTGTTATGGTGCCCCCAGCCTACTTGCAAGGGCGATTTCCTTGGGATGGTCCTGGGAGACCTCTCTCAGCCAATATGAATCTCATCACTCAGCTTATGAATTATGGCCCTCGTGTTGTTCCTGTTGCTGCACCTCACCAGTCTGTTTCTAGCAGACCTGCTAGTGTGTATCAACGCTATGTCGATGAGATTCCAAGATACCGCAGTGGGACAGGGACCTACCTTCCAAATCCTAAGGTTTCTGTAAGGGACCGGCATACTTCAAGTGCAAGAAGGGGGAGTTACAATTATGACAGAAATGACCACCATGGTGATAGAGAAGGGAACTGGAATGCCAACTCAAAGTCACGAGCTTCTGCACGCAACCACAGTCGCAGCCAAGCTGAGAAGTCAAATTCAAGAGTAGACCGTATGGCAGCTAGTGAGAGCCGTGCTGAGAGGCCATGGAGCTCACATAGACATGACTCATTCCCTTCATATCAATCTCAAAACGGTCCTATCCGCTCAAGCACTACTCAGAGTGTTTCCACTAATGTGGCGTATGGCATGTATCCACTACCAGGCATGAATCCTGGTGGGGTGTCATCAAATGGACCTACCATTCCCCCTCTTGTCATGCTATATCCTTATGATCATAATGCTGGGTATGGGCCACCACCTGCCGAACAGCTGGAGTTTGGTTCTCTTGGACCAGTGGGTTTCTCAGGTTTGAATGAAGTTTCACAGTTAAATGAGGGAAGTCGGATGGGTGGAGTATTCGAGGAACAAAGATTTCATGGTGGCTCAACTCAACGATCGTCACCTGATCAGCCTTCCTCACCACATATCCAAAGGGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004107 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010181 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019438 GO:0019752 GO:0031974 GO:0031981 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048037 GO:0050662 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Chorismate_synt

Protein Analysis

1350

Amino Acids

149.11

Weight (kDa)

6.07

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	44 - 164	4.1e-10	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	177 - 369	4.5e-93	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48850 AT1G48850 AT1G48850
fragaria_vesca	FvH4_7g19670 FvH4_7g19670
malus_domestica	MD01G1108900.v1.1 MD07G1175200.v1.1
prunus_persica	Prupe.2G214400_v2.0.a1 Prupe.2G214400_v2.0.a1 Prupe.2G214400_v2.0.a1
pyrus_communis	pycom07g16960
rosa_chinensis	RchiOBHm_Chr1g0363491
rosa_laevigata	RLG00000027561
rosa_multiflora	Rmu_sc0008820.1_g000005
rosa_roxburghii	Rroxscaffold_4G00293120
rosa_rugosa	Rorug01G0307400 Rorug01G0307500 Rorug01G0307600
rosa_samantha	Rh1AG316600 Rh1BG279900 Rh1CG296100 Rh1DG311200
rosa_wichuraiana	Rw1G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2301
AarI	CACCTGC	1 cut(s)	3877
Acc16I	TGCGCA	1 cut(s)	1446
Acc36I	ACCTGC	2 cut(s)	3376, 3877
AccB1I	GGYRCC	2 cut(s)	1585, 3220
AccB7I	CCANNNNNTGG	2 cut(s)	35, 1595
AccBSI	CCGCTC	1 cut(s)	3714
AccI	GTMKAC	3 cut(s)	462, 2442, 3615
AccII	CGCG	1 cut(s)	74
AciI	CCGC	9 cut(s)	72, 116, 205, 891, 1221, 1576, 2057, 3412, 3712
AclWI	GGATC	7 cut(s)	938, 1074, 1691, 2224, 2542, 2806, 3017
AcoI	YGGCCR	2 cut(s)	1038, 2478
AcsI	RAATTY	6 cut(s)	386, 1915, 2011, 3057, 3148, 3604
AcuI	CTGAAG	5 cut(s)	286, 441, 1671, 2142, 3051
AdeI	CACNNNGTG	1 cut(s)	1286
AfaI	GTAC	1 cut(s)	1789
AhlI	ACTAGT	2 cut(s)	2222, 2489
AjuI	GAANNNNNNNTTGG	2 cut(s)	1936, 1968
AleI	CACNNNNGTG	2 cut(s)	3519, 3743
AloI	GAACNNNNNNTCC	2 cut(s)	2889, 2921
Alw21I	GWGCWC	2 cut(s)	497, 3662
Alw26I	GTCTC	1 cut(s)	3262
Alw44I	GTGCAC	1 cut(s)	493
AlwI	GGATC	7 cut(s)	938, 1074, 1691, 2224, 2542, 2806, 3017
AoxI	GGCC	9 cut(s)	52, 573, 1038, 1401, 2478, 2834, 3316, 3650, 3860
ApaLI	GTGCAC	1 cut(s)	493
ApeKI	GCWGC	7 cut(s)	202, 1877, 2330, 2585, 3338, 3585, 3626
ApoI	RAATTY	6 cut(s)	386, 1915, 2011, 3057, 3148, 3604
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	5 cut(s)	177, 608, 1161, 1447, 2330
AsuHPI	GGTGA	8 cut(s)	602, 1274, 2067, 3201, 3338, 3533, 4002, 4020
AsuII	TTCGAA	1 cut(s)	1077
AxyI	CCTNAGG	1 cut(s)	3444
BaeGI	GKGCMC	6 cut(s)	25, 258, 337, 497, 777, 3225
BaeI	ACNNNNGTAYC	2 cut(s)	3400, 3433
BalI	TGGCCA	1 cut(s)	1040
BanI	GGYRCC	2 cut(s)	1585, 3220
BanII	GRGCYC	1 cut(s)	3662
BarI	GAAGNNNNNNTAC	2 cut(s)	866, 898
BauI	CACGAG	3 cut(s)	1618, 3321, 3558
BbsI	GAAGAC	1 cut(s)	874
Bbv12I	GWGCWC	2 cut(s)	497, 3662
BbvCI	CCTCAGC	1 cut(s)	2290
BbvI	GCAGC	7 cut(s)	214, 1889, 2317, 2572, 3325, 3597, 3638
BceAI	ACGGC	2 cut(s)	170, 3624
BciVI	GTATCC	2 cut(s)	996, 3771
BclI	TGATCA	5 cut(s)	1408, 2185, 2233, 3841, 4015
BcoDI	GTCTC	1 cut(s)	3262
BcuI	ACTAGT	2 cut(s)	2222, 2489
BfaI	CTAG	9 cut(s)	716, 1347, 1527, 2223, 2466, 2490, 3360, 3372, 3630
BfmI	CTRYAG	3 cut(s)	129, 1314, 1875
BfoI	RGCGCY	4 cut(s)	178, 609, 1162, 2331
BfuAI	ACCTGC	2 cut(s)	3376, 3877
BfuI	GTATCC	2 cut(s)	996, 3771
BglII	AGATCT	2 cut(s)	1682, 1849
BmcAI	AGTACT	1 cut(s)	1789
BmiI	GGNNCC	8 cut(s)	768, 1587, 1924, 2136, 2898, 3222, 3427, 3461
BmrI	ACTGGG	3 cut(s)	611, 748, 2816
BmsI	GCATC	6 cut(s)	72, 847, 1126, 1821, 1877, 2802
BmuI	ACTGGG	3 cut(s)	611, 748, 2816
BpiI	GAAGAC	1 cut(s)	874
BplI	GAGNNNNNCTC	2 cut(s)	2156, 2188
BpmI	CTGGAG	3 cut(s)	377, 2886, 3902
Bpu10I	CCTNAGC	2 cut(s)	1533, 2290
Bpu14I	TTCGAA	1 cut(s)	1077
BpuEI	CTTGAG	9 cut(s)	245, 530, 716, 1242, 1551, 1670, 2158, 2282, 3700
BsaBI	GATNNNNATC	1 cut(s)	2679
BsaI	GGTCTC	1 cut(s)	3262
BsaWI	WCCGGW	2 cut(s)	1471, 1925
BsaXI	ACNNNNNCTCC	2 cut(s)	2884, 2914
Bse118I	RCCGGY	1 cut(s)	3462
Bse1I	ACTGG	7 cut(s)	606, 743, 2822, 2903, 3349, 3542, 3902
Bse21I	CCTNAGG	1 cut(s)	3444
Bse8I	GATNNNNATC	1 cut(s)	2679
BseGI	GGATG	7 cut(s)	1721, 1777, 1836, 2308, 3114, 3262, 3960
BseJI	GATNNNNATC	1 cut(s)	2679
BseNI	ACTGG	7 cut(s)	606, 743, 2822, 2903, 3349, 3542, 3902
BseRI	GAGGAG	6 cut(s)	134, 380, 527, 801, 1856, 2503
BseSI	GKGCMC	6 cut(s)	25, 258, 337, 497, 777, 3225
BseXI	GCAGC	7 cut(s)	214, 1889, 2317, 2572, 3325, 3597, 3638
BseYI	CCCAGC	4 cut(s)	481, 2941, 3226, 3851
BsgI	GTGCAG	3 cut(s)	221, 3324, 3552
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	4007
BshFI	GGCC	9 cut(s)	54, 575, 1040, 1403, 2480, 2836, 3318, 3652, 3862
BshNI	GGYRCC	2 cut(s)	1585, 3220
BsiEI	CGRYCG	1 cut(s)	4007
BsiHKAI	GWGCWC	2 cut(s)	497, 3662
BsiSI	CCGG	3 cut(s)	1472, 1926, 3463
BslFI	GGGAC	6 cut(s)	1834, 2054, 2910, 3433, 3439, 3473
BsmAI	GTCTC	1 cut(s)	3262
BsmFI	GGGAC	6 cut(s)	1834, 2054, 2910, 3433, 3439, 3473
BsmI	GAATGC	4 cut(s)	147, 385, 3184, 3547
BsnI	GGCC	9 cut(s)	54, 575, 1040, 1403, 2480, 2836, 3318, 3652, 3862
Bso31I	GGTCTC	1 cut(s)	3262
Bsp119I	TTCGAA	1 cut(s)	1077
Bsp1286I	GDGCHC	7 cut(s)	25, 258, 337, 497, 777, 3225, 3662
Bsp19I	CCATGG	4 cut(s)	613, 3069, 3517, 3653
BspACI	CCGC	9 cut(s)	72, 116, 205, 891, 1221, 1576, 2057, 3412, 3712
BspANI	GGCC	9 cut(s)	54, 575, 1040, 1403, 2480, 2836, 3318, 3652, 3862
BspFNI	CGCG	1 cut(s)	74
BspHI	TCATGA	2 cut(s)	213, 2236
BspLI	GGNNCC	8 cut(s)	768, 1587, 1924, 2136, 2898, 3222, 3427, 3461
BspMAI	CTGCAG	2 cut(s)	133, 1879
BspMI	ACCTGC	2 cut(s)	3376, 3877
BspPI	GGATC	7 cut(s)	938, 1074, 1691, 2224, 2542, 2806, 3017
BspQI	GCTCTTC	1 cut(s)	165
BspT104I	TTCGAA	1 cut(s)	1077
BspT107I	GGYRCC	2 cut(s)	1585, 3220
BspTNI	GGTCTC	1 cut(s)	3262
BsrBI	CCGCTC	1 cut(s)	3714
BsrFI	RCCGGY	1 cut(s)	3462
BsrI	ACTGG	7 cut(s)	606, 743, 2822, 2903, 3349, 3542, 3902
BssAI	RCCGGY	1 cut(s)	3462
BssNAI	GTATAC	1 cut(s)	2443
BssSI	CACGAG	3 cut(s)	1618, 3321, 3558
BssT1I	CCWWGG	8 cut(s)	111, 613, 967, 2033, 3069, 3251, 3517, 3653
Bst1107I	GTATAC	1 cut(s)	2443
Bst2BI	CACGAG	3 cut(s)	1618, 3321, 3558
Bst6I	CTCTTC	2 cut(s)	165, 792
BstAPI	GCANNNNNTGC	1 cut(s)	1874
BstBI	TTCGAA	1 cut(s)	1077
BstC8I	GCNNGC	7 cut(s)	30, 145, 1038, 1163, 1669, 3136, 3571
BstDSI	CCRYGG	4 cut(s)	613, 3069, 3517, 3653
BstENI	CCTNNNNNAGG	1 cut(s)	512
BstF5I	GGATG	7 cut(s)	1721, 1777, 1836, 2308, 3114, 3262, 3960
BstFNI	CGCG	1 cut(s)	74
BstH2I	RGCGCY	4 cut(s)	178, 609, 1162, 2331
BstHHI	GCGC	5 cut(s)	177, 608, 1161, 1447, 2330
BstMAI	GTCTC	1 cut(s)	3262
BstMCI	CGRYCG	1 cut(s)	4007
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 228, 1025, 1874, 2056
BstNSI	RCATGY	4 cut(s)	1451, 2002, 2753, 3760
BstSFI	CTRYAG	3 cut(s)	129, 1314, 1875
BstSLI	GKGCMC	6 cut(s)	25, 258, 337, 497, 777, 3225
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	7 cut(s)	214, 1889, 2317, 2572, 3325, 3597, 3638
BstV2I	GAAGAC	1 cut(s)	874
BstX2I	RGATCY	4 cut(s)	1066, 1682, 1849, 2216
BstXI	CCANNNNNNTGG	3 cut(s)	1190, 1624, 3745
BstYI	RGATCY	4 cut(s)	1066, 1682, 1849, 2216
BstZ17I	GTATAC	1 cut(s)	2443
Bsu36I	CCTNAGG	1 cut(s)	3444
BsuI	GTATCC	2 cut(s)	996, 3771
BsuRI	GGCC	9 cut(s)	54, 575, 1040, 1403, 2480, 2836, 3318, 3652, 3862
BtgI	CCRYGG	4 cut(s)	613, 3069, 3517, 3653
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	7 cut(s)	1721, 1777, 1836, 2308, 3114, 3262, 3960
BtsI	GCAGTG	2 cut(s)	1015, 3421
BtsIMutI	CAGTG	7 cut(s)	876, 1015, 1342, 1558, 3130, 3421, 3909
BveI	ACCTGC	2 cut(s)	3376, 3877
Cac8I	GCNNGC	7 cut(s)	30, 145, 1038, 1163, 1669, 3136, 3571
CciI	TCATGA	2 cut(s)	213, 2236
CfoI	GCGC	5 cut(s)	177, 608, 1161, 1447, 2330
Cfr10I	RCCGGY	1 cut(s)	3462
CseI	GACGC	1 cut(s)	63
CsiI	ACCWGGT	1 cut(s)	2137
Csp6I	GTAC	1 cut(s)	1788
CviQI	GTAC	1 cut(s)	1788
DraIII	CACNNNGTG	1 cut(s)	1286
EaeI	YGGCCR	2 cut(s)	1038, 2478
Eam1104I	CTCTTC	2 cut(s)	165, 792
EarI	CTCTTC	2 cut(s)	165, 792
EciI	GGCGGA	2 cut(s)	131, 1591
Ecl136II	GAGCTC	1 cut(s)	3660
Eco130I	CCWWGG	8 cut(s)	111, 613, 967, 2033, 3069, 3251, 3517, 3653
Eco147I	AGGCCT	1 cut(s)	575
Eco24I	GRGCYC	1 cut(s)	3662
Eco31I	GGTCTC	1 cut(s)	3262
Eco53kI	GAGCTC	1 cut(s)	3660
Eco57I	CTGAAG	5 cut(s)	286, 441, 1671, 2142, 3051
Eco81I	CCTNAGG	1 cut(s)	3444
EcoICRI	GAGCTC	1 cut(s)	3660
EcoNI	CCTNNNNNAGG	1 cut(s)	512
EcoO109I	RGGNCCY	5 cut(s)	767, 1401, 2834, 2897, 3426
EcoT14I	CCWWGG	8 cut(s)	111, 613, 967, 2033, 3069, 3251, 3517, 3653
EcoT22I	ATGCAT	1 cut(s)	2052
EcoT38I	GRGCYC	1 cut(s)	3662
ErhI	CCWWGG	8 cut(s)	111, 613, 967, 2033, 3069, 3251, 3517, 3653
FalI	AAGNNNNNCTT	2 cut(s)	1594, 1626
FaqI	GGGAC	6 cut(s)	1834, 2054, 2910, 3433, 3439, 3473
FauNDI	CATATG	1 cut(s)	2614
FbaI	TGATCA	5 cut(s)	1408, 2185, 2233, 3841, 4015
FblI	GTMKAC	3 cut(s)	462, 2442, 3615
FokI	GGATG	7 cut(s)	1708, 1784, 1843, 2295, 3101, 3269, 3967
FriOI	GRGCYC	1 cut(s)	3662
FspAI	RTGCGCAY	1 cut(s)	1446
FspBI	CTAG	9 cut(s)	716, 1347, 1527, 2223, 2466, 2490, 3360, 3372, 3630
FspI	TGCGCA	1 cut(s)	1446
GlaI	GCGC	5 cut(s)	176, 607, 1160, 1446, 2329
GsaI	CCCAGC	4 cut(s)	485, 2945, 3230, 3855
GsuI	CTGGAG	3 cut(s)	377, 2886, 3902
HaeII	RGCGCY	4 cut(s)	178, 609, 1162, 2331
HaeIII	GGCC	9 cut(s)	54, 575, 1040, 1403, 2480, 2836, 3318, 3652, 3862
HapII	CCGG	3 cut(s)	1472, 1926, 3463
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	5 cut(s)	177, 608, 1161, 1447, 2330
Hin6I	GCGC	5 cut(s)	175, 606, 1159, 1445, 2328
HinP1I	GCGC	5 cut(s)	175, 606, 1159, 1445, 2328
HincII	GTYRAC	6 cut(s)	1858, 2109, 2286, 2559, 2595, 3044
HindII	GTYRAC	6 cut(s)	1858, 2109, 2286, 2559, 2595, 3044
HindIII	AAGCTT	1 cut(s)	912
HpaI	GTTAAC	1 cut(s)	1858
HpaII	CCGG	3 cut(s)	1472, 1926, 3463
HphI	GGTGA	8 cut(s)	602, 1274, 2067, 3201, 3338, 3533, 4002, 4020
HpyCH4IV	ACGT	1 cut(s)	973
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 228, 1025, 1874, 2056
HpySE526I	ACGT	1 cut(s)	973
HspAI	GCGC	5 cut(s)	175, 606, 1159, 1445, 2328
Ksp22I	TGATCA	5 cut(s)	1408, 2185, 2233, 3841, 4015
KspAI	GTTAAC	1 cut(s)	1858
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	5 cut(s)	1843, 2039, 2605, 3088, 3657
Lsp1109I	GCAGC	7 cut(s)	214, 1889, 2317, 2572, 3325, 3597, 3638
LweI	GCATC	6 cut(s)	72, 847, 1126, 1821, 1877, 2802
MabI	ACCWGGT	1 cut(s)	2137
MaeI	CTAG	9 cut(s)	716, 1347, 1527, 2223, 2466, 2490, 3360, 3372, 3630
MaeII	ACGT	1 cut(s)	973
MbiI	CCGCTC	1 cut(s)	3714
MflI	RGATCY	4 cut(s)	1066, 1682, 1849, 2216
MhlI	GDGCHC	7 cut(s)	25, 258, 337, 497, 777, 3225, 3662
MlsI	TGGCCA	1 cut(s)	1040
MluNI	TGGCCA	1 cut(s)	1040
MlyI	GAGTC	4 cut(s)	304, 320, 2038, 3668
MmeI	TCCRAC	2 cut(s)	1605, 3932
Mox20I	TGGCCA	1 cut(s)	1040
Mph1103I	ATGCAT	1 cut(s)	2052
MroXI	GAANNNNTTC	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	1040
MseI	TTAA	7 cut(s)	474, 933, 1485, 1857, 2081, 3053, 3938
MslI	CAYNNNNRTG	9 cut(s)	933, 1119, 1188, 1391, 2241, 2403, 3519, 3669, 3743
Msp20I	TGGCCA	1 cut(s)	1040
MspA1I	CMGCKG	6 cut(s)	205, 481, 1691, 2294, 3029, 3880
MspI	CCGG	3 cut(s)	1472, 1926, 3463
Mva1269I	GAATGC	4 cut(s)	147, 385, 3184, 3547
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	5 cut(s)	29, 228, 1025, 1874, 2056
NcoI	CCATGG	4 cut(s)	613, 3069, 3517, 3653
NdeI	CATATG	1 cut(s)	2614
NlaIV	GGNNCC	8 cut(s)	768, 1587, 1924, 2136, 2898, 3222, 3427, 3461
NmeAIII	GCCGAG	3 cut(s)	2402, 2971, 3160
NmuCI	GTSAC	4 cut(s)	2073, 3125, 3555, 4008
NsbI	TGCGCA	1 cut(s)	1446
NsiI	ATGCAT	1 cut(s)	2052
NspI	RCATGY	4 cut(s)	1451, 2002, 2753, 3760
NspV	TTCGAA	1 cut(s)	1077
OliI	CACNNNNGTG	2 cut(s)	3519, 3743
PagI	TCATGA	2 cut(s)	213, 2236
PaqCI	CACCTGC	1 cut(s)	3877
PceI	AGGCCT	1 cut(s)	575
PciSI	GCTCTTC	1 cut(s)	165
PctI	GAATGC	4 cut(s)	147, 385, 3184, 3547
PdmI	GAANNNNTTC	1 cut(s)	221
PflMI	CCANNNNNTGG	2 cut(s)	35, 1595
Ple19I	CGATCG	1 cut(s)	4007
PleI	GAGTC	4 cut(s)	304, 320, 2037, 3668
PpsI	GAGTC	4 cut(s)	304, 320, 2037, 3668
PpuMI	RGGWCCY	3 cut(s)	767, 2897, 3426
PsiI	TTATAA	1 cut(s)	2301
Psp124BI	GAGCTC	1 cut(s)	3662
Psp5II	RGGWCCY	3 cut(s)	767, 2897, 3426
PspFI	CCCAGC	4 cut(s)	481, 2941, 3226, 3851
PspN4I	GGNNCC	8 cut(s)	768, 1587, 1924, 2136, 2898, 3222, 3427, 3461
PspPPI	RGGWCCY	3 cut(s)	767, 2897, 3426
PstI	CTGCAG	2 cut(s)	133, 1879
PsuI	RGATCY	4 cut(s)	1066, 1682, 1849, 2216
PvuI	CGATCG	1 cut(s)	4007
PvuII	CAGCTG	5 cut(s)	481, 1691, 2294, 3029, 3880
RsaI	GTAC	1 cut(s)	1789
RsaNI	GTAC	1 cut(s)	1788
RseI	CAYNNNNRTG	9 cut(s)	933, 1119, 1188, 1391, 2241, 2403, 3519, 3669, 3743
SacI	GAGCTC	1 cut(s)	3662
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	7 cut(s)	474, 933, 1485, 1857, 2081, 3053, 3938
ScaI	AGTACT	1 cut(s)	1789
SchI	GAGTC	4 cut(s)	304, 320, 2038, 3668
SduI	GDGCHC	7 cut(s)	25, 258, 337, 497, 777, 3225, 3662
SexAI	ACCWGGT	1 cut(s)	2137
SfaNI	GCATC	6 cut(s)	72, 847, 1126, 1821, 1877, 2802
SfcI	CTRYAG	3 cut(s)	129, 1314, 1875
SfuI	TTCGAA	1 cut(s)	1077
SmiMI	CAYNNNNRTG	9 cut(s)	933, 1119, 1188, 1391, 2241, 2403, 3519, 3669, 3743
SmlI	CTYRAG	9 cut(s)	260, 509, 695, 1257, 1566, 1649, 2173, 2261, 3715
SmoI	CTYRAG	9 cut(s)	260, 509, 695, 1257, 1566, 1649, 2173, 2261, 3715
SpeI	ACTAGT	2 cut(s)	2222, 2489
SseBI	AGGCCT	1 cut(s)	575
SsiI	CCGC	9 cut(s)	72, 116, 205, 891, 1221, 1576, 2057, 3412, 3712
SspMI	CTAG	9 cut(s)	716, 1347, 1527, 2223, 2466, 2490, 3360, 3372, 3630
SstI	GAGCTC	1 cut(s)	3662
StuI	AGGCCT	1 cut(s)	575
StyI	CCWWGG	8 cut(s)	111, 613, 967, 2033, 3069, 3251, 3517, 3653
TaiI	ACGT	1 cut(s)	976
TaqI	TCGA	9 cut(s)	519, 814, 1077, 1129, 1249, 1784, 1967, 3393, 3969
TaqII	GACCGA	1 cut(s)	2469
TatI	WGTACW	1 cut(s)	1787
TauI	GCSGC	3 cut(s)	74, 208, 1224
Tru1I	TTAA	7 cut(s)	474, 933, 1485, 1857, 2081, 3053, 3938
Tru9I	TTAA	7 cut(s)	474, 933, 1485, 1857, 2081, 3053, 3938
TscAI	CASTG	7 cut(s)	876, 1015, 1342, 1558, 3130, 3421, 3909
TseFI	GTSAC	4 cut(s)	2073, 3125, 3555, 4008
TseI	GCWGC	7 cut(s)	202, 1877, 2330, 2585, 3338, 3585, 3626
Tsp45I	GTSAC	4 cut(s)	2073, 3125, 3555, 4008
TspGWI	ACGGA	3 cut(s)	67, 1345, 1797
TspRI	CASTG	7 cut(s)	876, 1015, 1342, 1558, 3130, 3421, 3909
Van91I	CCANNNNNTGG	2 cut(s)	35, 1595
VneI	GTGCAC	1 cut(s)	493
XagI	CCTNNNNNAGG	1 cut(s)	512
XapI	RAATTY	6 cut(s)	386, 1915, 2011, 3057, 3148, 3604
XbaI	TCTAGA	1 cut(s)	715
XceI	RCATGY	4 cut(s)	1451, 2002, 2753, 3760
XcmI	CCANNNNNNNNNTGG	2 cut(s)	634, 1775
XmiI	GTMKAC	3 cut(s)	462, 2442, 3615
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	9 cut(s)	716, 1347, 1527, 2223, 2466, 2490, 3360, 3372, 3630
ZrmI	AGTACT	1 cut(s)	1789
Zsp2I	ATGCAT	1 cut(s)	2052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.