FvH4_7g19670

Chorismate synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
16150567 .. 16156883
6317 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19670.t1

Sequence Viewer

Length: 1320 bp
ATGGCTTCTTCGTCTCTGTCGTCCAAACCCTTTCTGGGTTCTGCTTTAAGCACCGAACGCCTTTCTGGGTTGTGCTCTGATCTCCGAAACCTCTCCTCCCCCTCCCTTCACTTCTCCGTCTGCCGTCGACCCGCCAAGAAGCTCCAGGTGCAGGCAGCTGGGAGTACTTTTGGGAATTACTTCCGTGTTACAACTTATGGAGAGTCCCATGGTGGTGGTGTTGGTTGTGTAATTGATGGAGTTCCTCCTCGGAGACCCTTGTCTGAAGCTGATTTGCAAGCCGACCTTGACAGAAGGAGGCCAGGCCAGAGCCGAATTACTACCCCTAGGAAGGAAACCGACACATGCAAAATACTTTCAGGAGTCCAAGGAGGATTAACTACGGGAACTCCAATTCATGTGTTTGTACCGAATACTGATCAGAGAGGAGGGGACTATGACGAAATGTCAATAGCTTATAGGCCTTCGCATGCAGATCTCACATATGACATGAAGTATGGTATCAGATCAGTGCAGGGTGGTGGTAGATCTTCAGCTAGAGAAACAATTGGAAGAGTTGCTGCAGGAGCAGTTGCTAAAAAGATCCTCAAGGGTTTCTCAGGAACTGAGGTTTTTGCTTATGTTTCGCAAGTTCACAAGGTTGTACTCCCAGAGGACTCGGTTGATCATTACACTCTGGCACTTGATCAGATTGAGAGTAATATAGTTAGGTGTCCAGATCCTGAATACGCAGAAAAGATGATTGCTGCCATTGATGCTGTTAGAGTGAGAGGAGAATCCATTGGTGGTGTTGTCACGTGCATAGTTAGAAATTGCCCACGGGGTCTTGGTTCACCTGTCTTTGACAAACTTGAAGCTGAACTTGCTAAAGCTTGCATGTCATTACCTGCAACAAAAGGATTTGAATTTGGAAGCGGGTTTGCAGGTACCTTTTTAACTGGGAGTGAACACAATGATGAGTTCTATGTGGATGAACAAGGACGAGTACGGACAAGAACAAATCGCTCTGGTGGGACACAGGGTGGAATATCTAATGGGGAAATCATAAACATGAGAATAGCTTTTAAGCCAACAGCTACTATTGCAAGGAAGCAGAATACAGTAACTAGGGATAAGAAGGAGACTGAACTAATAGCCCGTGGTCGCCATGATCCTTGTGTTGTCCCGCGAGCGGTTCCAATGGTGGAGGCTGGAGTAGCGCTAGTGCTCATGGATCAGTTAATGGCTCAGTATGCCCAATGCCATCTTTTTCCTTTCAATCCAGATGTACAAGAACCTCTCAACGAAGTGAACTCTCTTCCAACTATGTCTTTGTCATAG

Protein Analysis

440

Amino Acids

47.39

Weight (kDa)

8.46

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chorismate_synt PF01264 61 - 408 5.1e-134 Chorismate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 895, 914
Acc65I GGTACC 1 cut(s) 926
AccB1I GGYRCC 1 cut(s) 926
AccBSI CCGCTC 1 cut(s) 1172
AccI GTMKAC 1 cut(s) 127
AccII CGCG 1 cut(s) 1168
AciI CCGC 4 cut(s) 132, 915, 1166, 1172
AclWI GGATC 4 cut(s) 577, 713, 1145, 1221
AcsI RAATTY 1 cut(s) 905
AcuI CTGAAG 2 cut(s) 285, 516
AcvI CACGTG 1 cut(s) 798
AdeI CACNNNGTG 1 cut(s) 1022
AfaI GTAC 6 cut(s) 166, 408, 645, 928, 987, 1269
AfeI AGCGCT 1 cut(s) 1200
AfiI CCNNNNNNNGG 4 cut(s) 35, 151, 331, 1171
AgsI TTSAA 3 cut(s) 854, 905, 1258
AhdI GACNNNNNGTC 1 cut(s) 445
AjnI CCWGG 2 cut(s) 144, 301
AluBI AGCT 9 cut(s) 142, 158, 269, 455, 536, 857, 872, 1061, 1076
AluI AGCT 9 cut(s) 142, 158, 269, 455, 536, 857, 872, 1061, 1076
Alw21I GWGCWC 2 cut(s) 77, 1209
Alw26I GTCTC 3 cut(s) 18, 247, 1115
AlwI GGATC 4 cut(s) 577, 713, 1145, 1221
AlwNI CAGNNNCTG 2 cut(s) 605, 722
Aor51HI AGCGCT 1 cut(s) 1200
AoxI GGCC 3 cut(s) 299, 304, 461
ApeKI GCWGC 3 cut(s) 155, 560, 746
ApoI RAATTY 1 cut(s) 905
Asp700I GAANNNNTTC 1 cut(s) 179
Asp718I GGTACC 1 cut(s) 926
AspA2I CCTAGG 1 cut(s) 326
AspLEI GCGC 1 cut(s) 1201
AsuHPI GGTGA 1 cut(s) 825
AvrII CCTAGG 1 cut(s) 326
BanI GGYRCC 1 cut(s) 926
BbrPI CACGTG 1 cut(s) 798
Bbv12I GWGCWC 2 cut(s) 77, 1209
BbvI GCAGC 3 cut(s) 167, 547, 733
BccI CCATC 2 cut(s) 230, 1251
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 2 cut(s) 146, 303
BclI TGATCA 3 cut(s) 418, 664, 685
BcoDI GTCTC 3 cut(s) 18, 247, 1115
BfaI CTAG 4 cut(s) 327, 537, 1107, 1202
BfmI CTRYAG 1 cut(s) 561
BfoI RGCGCY 1 cut(s) 1202
BfuAI ACCTGC 2 cut(s) 895, 914
BglII AGATCT 2 cut(s) 475, 527
BisI GCNGC 3 cut(s) 156, 561, 747
BlnI CCTAGG 1 cut(s) 326
BlsI GCNGC 3 cut(s) 157, 562, 748
BmcAI AGTACT 1 cut(s) 166
Bme1390I CCNGG 2 cut(s) 146, 303
BmeRI GACNNNNNGTC 1 cut(s) 445
BmiI GGNNCC 2 cut(s) 928, 1176
BmrFI CCNGG 2 cut(s) 146, 303
BmrI ACTGGG 1 cut(s) 948
BmsI GCATC 1 cut(s) 745
BmuI ACTGGG 1 cut(s) 948
BoxI GACNNNNGTC 1 cut(s) 259
BpmI CTGGAG 2 cut(s) 128, 1212
BpuEI CTTGAG 1 cut(s) 572
BsaAI YACGTR 1 cut(s) 798
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 6 cut(s) 208, 248, 326, 367, 818, 1138
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 373, 403
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 151, 331, 1171
Bse1I ACTGG 1 cut(s) 943
BseBI CCWGG 2 cut(s) 146, 303
BseDI CCNNGG 6 cut(s) 208, 248, 326, 367, 818, 1138
BseGI GGATG 1 cut(s) 976
BseLI CCNNNNNNNGG 4 cut(s) 35, 151, 331, 1171
BseMII CTCAG 3 cut(s) 597, 612, 1241
BseNI ACTGG 1 cut(s) 943
BseRI GAGGAG 4 cut(s) 85, 237, 441, 786
BseXI GCAGC 3 cut(s) 167, 547, 733
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 2 cut(s) 170, 533
Bsh1236I CGCG 1 cut(s) 1168
BshFI GGCC 3 cut(s) 301, 306, 463
BshNI GGYRCC 1 cut(s) 926
BsiHKAI GWGCWC 2 cut(s) 77, 1209
BslFI GGGAC 4 cut(s) 190, 446, 1027, 1148
BslI CCNNNNNNNGG 4 cut(s) 35, 151, 331, 1171
BsmAI GTCTC 3 cut(s) 18, 247, 1115
BsmBI CGTCTC 1 cut(s) 18
BsmFI GGGAC 4 cut(s) 190, 446, 1027, 1148
BsnI GGCC 3 cut(s) 301, 306, 463
Bso31I GGTCTC 1 cut(s) 247
Bsp1286I GDGCHC 2 cut(s) 77, 1209
Bsp1407I TGTACA 1 cut(s) 1267
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 4 cut(s) 132, 915, 1166, 1172
BspANI GGCC 3 cut(s) 301, 306, 463
BspCNI CTCAG 3 cut(s) 598, 611, 1240
BspFNI CGCG 1 cut(s) 1168
BspLI GGNNCC 2 cut(s) 928, 1176
BspMAI CTGCAG 1 cut(s) 565
BspMI ACCTGC 2 cut(s) 895, 914
BspPI GGATC 4 cut(s) 577, 713, 1145, 1221
BspT107I GGYRCC 1 cut(s) 926
BspTNI GGTCTC 1 cut(s) 247
BsrBI CCGCTC 1 cut(s) 1172
BsrGI TGTACA 1 cut(s) 1267
BsrI ACTGG 1 cut(s) 943
BssECI CCNNGG 6 cut(s) 208, 248, 326, 367, 818, 1138
BssT1I CCWWGG 3 cut(s) 208, 326, 367
Bst2UI CCWGG 2 cut(s) 146, 303
Bst4CI ACNGT 1 cut(s) 1102
Bst6I CTCTTC 2 cut(s) 547, 1302
BstAUI TGTACA 1 cut(s) 1267
BstBAI YACGTR 1 cut(s) 798
BstC8I GCNNGC 5 cut(s) 153, 279, 471, 874, 1170
BstDEI CTNAG 3 cut(s) 598, 606, 1227
BstDSI CCRYGG 3 cut(s) 208, 818, 1138
BstF5I GGATG 1 cut(s) 976
BstFNI CGCG 1 cut(s) 1168
BstH2I RGCGCY 1 cut(s) 1202
BstHHI GCGC 1 cut(s) 1201
BstMAI GTCTC 3 cut(s) 18, 247, 1115
BstMWI GCNNNNNNNGC 8 cut(s) 57, 148, 566, 755, 863, 1082, 1196, 1232
BstNI CCWGG 2 cut(s) 146, 303
BstNSI RCATGY 3 cut(s) 348, 473, 880
BstPAI GACNNNNGTC 1 cut(s) 259
BstSCI CCNGG 2 cut(s) 144, 301
BstSFI CTRYAG 1 cut(s) 561
BstUI CGCG 1 cut(s) 1168
BstV1I GCAGC 3 cut(s) 167, 547, 733
BstX2I RGATCY 4 cut(s) 475, 527, 582, 718
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 4 cut(s) 475, 527, 582, 718
BsuRI GGCC 3 cut(s) 301, 306, 463
BtgI CCRYGG 3 cut(s) 208, 818, 1138
BtsCI GGATG 1 cut(s) 976
BtsIMutI CAGTG 1 cut(s) 516
BveI ACCTGC 2 cut(s) 895, 914
Cac8I GCNNGC 5 cut(s) 153, 279, 471, 874, 1170
CaiI CAGNNNCTG 2 cut(s) 605, 722
CfoI GCGC 1 cut(s) 1201
Csp6I GTAC 6 cut(s) 165, 407, 644, 927, 986, 1268
CviAII CATG 9 cut(s) 209, 345, 398, 470, 490, 877, 1051, 1148, 1210
CviQI GTAC 6 cut(s) 165, 407, 644, 927, 986, 1268
DdeI CTNAG 3 cut(s) 598, 606, 1227
DraIII CACNNNGTG 1 cut(s) 1022
DriI GACNNNNNGTC 1 cut(s) 445
Eam1104I CTCTTC 2 cut(s) 547, 1302
Eam1105I GACNNNNNGTC 1 cut(s) 445
EarI CTCTTC 2 cut(s) 547, 1302
Eco130I CCWWGG 3 cut(s) 208, 326, 367
Eco147I AGGCCT 1 cut(s) 463
Eco31I GGTCTC 1 cut(s) 247
Eco47III AGCGCT 1 cut(s) 1200
Eco57I CTGAAG 2 cut(s) 285, 516
Eco72I CACGTG 1 cut(s) 798
EcoRII CCWGG 2 cut(s) 144, 301
EcoT14I CCWWGG 3 cut(s) 208, 326, 367
ErhI CCWWGG 3 cut(s) 208, 326, 367
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 9 cut(s) 212, 348, 401, 473, 493, 880, 1054, 1151, 1213
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 846, 878
FaqI GGGAC 4 cut(s) 190, 446, 1027, 1148
FatI CATG 9 cut(s) 208, 344, 397, 469, 489, 876, 1050, 1147, 1209
FauI CCCGC 3 cut(s) 139, 908, 1173
FauNDI CATATG 1 cut(s) 484
FbaI TGATCA 3 cut(s) 418, 664, 685
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 156, 561, 747
FokI GGATG 1 cut(s) 983
Fsp4HI GCNGC 3 cut(s) 156, 561, 747
FspBI CTAG 4 cut(s) 327, 537, 1107, 1202
GlaI GCGC 1 cut(s) 1200
GluI GCNGC 3 cut(s) 156, 561, 747
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 2 cut(s) 128, 1212
HaeII RGCGCY 1 cut(s) 1202
HaeIII GGCC 3 cut(s) 301, 306, 463
HhaI GCGC 1 cut(s) 1201
Hin1II CATG 9 cut(s) 212, 348, 401, 473, 493, 880, 1054, 1151, 1213
Hin6I GCGC 1 cut(s) 1199
HinP1I GCGC 1 cut(s) 1199
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 870
HinfI GANTC 4 cut(s) 203, 363, 656, 776
HphI GGTGA 1 cut(s) 825
Hpy166II GTNNAC 5 cut(s) 128, 634, 833, 947, 1291
Hpy188I TCNGA 7 cut(s) 79, 86, 252, 265, 423, 506, 690
Hpy188III TCNNGA 5 cut(s) 360, 600, 716, 722, 1262
Hpy8I GTNNAC 5 cut(s) 128, 634, 833, 947, 1291
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 5 cut(s) 116, 288, 325, 474, 1111
HpyCH4III ACNGT 1 cut(s) 1102
HpyCH4IV ACGT 1 cut(s) 797
HpyF10VI GCNNNNNNNGC 8 cut(s) 57, 148, 566, 755, 863, 1082, 1196, 1232
HpyF3I CTNAG 3 cut(s) 598, 606, 1227
HpySE526I ACGT 1 cut(s) 797
Hsp92II CATG 9 cut(s) 212, 348, 401, 473, 493, 880, 1054, 1151, 1213
HspAI GCGC 1 cut(s) 1199
KpnI GGTACC 1 cut(s) 930
Ksp22I TGATCA 3 cut(s) 418, 664, 685
LmnI GCTCC 2 cut(s) 147, 566
Lsp1109I GCAGC 3 cut(s) 167, 547, 733
LweI GCATC 1 cut(s) 745
MaeI CTAG 4 cut(s) 327, 537, 1107, 1202
MaeII ACGT 1 cut(s) 797
MaeIII GTNAC 3 cut(s) 187, 793, 1102
MbiI CCGCTC 1 cut(s) 1172
MboII GAAGA 3 cut(s) 522, 564, 1289
MfeI CAATTG 1 cut(s) 546
MflI RGATCY 4 cut(s) 475, 527, 582, 718
MhlI GDGCHC 2 cut(s) 77, 1209
MluCI AATT 7 cut(s) 175, 231, 315, 393, 546, 811, 905
MlyI GAGTC 3 cut(s) 212, 372, 650
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 5 cut(s) 47, 377, 935, 1065, 1220
MslI CAYNNNNRTG 3 cut(s) 213, 954, 1049
MspA1I CMGCKG 1 cut(s) 158
MspR9I CCNGG 2 cut(s) 146, 303
MunI CAATTG 1 cut(s) 546
MvaI CCWGG 2 cut(s) 146, 303
MvnI CGCG 1 cut(s) 1168
MwoI GCNNNNNNNGC 8 cut(s) 57, 148, 566, 755, 863, 1082, 1196, 1232
NcoI CCATGG 1 cut(s) 208
NdeI CATATG 1 cut(s) 484
NlaIII CATG 9 cut(s) 212, 348, 401, 473, 493, 880, 1054, 1151, 1213
NlaIV GGNNCC 2 cut(s) 928, 1176
NmuCI GTSAC 1 cut(s) 793
NspI RCATGY 3 cut(s) 348, 473, 880
PaeI GCATGC 1 cut(s) 473
PceI AGGCCT 1 cut(s) 463
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 776
PkrI GCNGC 3 cut(s) 157, 562, 748
PleI GAGTC 3 cut(s) 211, 371, 650
PmaCI CACGTG 1 cut(s) 798
PmlI CACGTG 1 cut(s) 798
PpsI GAGTC 3 cut(s) 211, 371, 650
Ppu21I YACGTR 1 cut(s) 798
PshAI GACNNNNGTC 1 cut(s) 259
Psp6I CCWGG 2 cut(s) 144, 301
PspCI CACGTG 1 cut(s) 798
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 2 cut(s) 144, 301
PspN4I GGNNCC 2 cut(s) 928, 1176
PstI CTGCAG 1 cut(s) 565
PstNI CAGNNNCTG 2 cut(s) 605, 722
PsuI RGATCY 4 cut(s) 475, 527, 582, 718
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 6 cut(s) 166, 408, 645, 928, 987, 1269
RsaNI GTAC 6 cut(s) 165, 407, 644, 927, 986, 1268
RseI CAYNNNNRTG 3 cut(s) 213, 954, 1049
SalI GTCGAC 1 cut(s) 126
SaqAI TTAA 5 cut(s) 47, 377, 935, 1065, 1220
SatI GCNGC 3 cut(s) 156, 561, 747
ScaI AGTACT 1 cut(s) 166
SchI GAGTC 3 cut(s) 212, 372, 650
ScrFI CCNGG 2 cut(s) 146, 303
SduI GDGCHC 2 cut(s) 77, 1209
SfaNI GCATC 1 cut(s) 745
SfcI CTRYAG 1 cut(s) 561
SmiMI CAYNNNNRTG 3 cut(s) 213, 954, 1049
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
SphI GCATGC 1 cut(s) 473
Sse9I AATT 7 cut(s) 175, 231, 315, 393, 546, 811, 905
SseBI AGGCCT 1 cut(s) 463
SsiI CCGC 4 cut(s) 132, 915, 1166, 1172
SspMI CTAG 4 cut(s) 327, 537, 1107, 1202
StuI AGGCCT 1 cut(s) 463
StyD4I CCNGG 2 cut(s) 144, 301
StyI CCWWGG 3 cut(s) 208, 326, 367
TaaI ACNGT 1 cut(s) 1102
TaiI ACGT 1 cut(s) 800
TaqI TCGA 1 cut(s) 127
TasI AATT 7 cut(s) 175, 231, 315, 393, 546, 811, 905
TatI WGTACW 3 cut(s) 164, 643, 1267
TfiI GAWTC 1 cut(s) 776
Tru1I TTAA 5 cut(s) 47, 377, 935, 1065, 1220
Tru9I TTAA 5 cut(s) 47, 377, 935, 1065, 1220
TscAI CASTG 1 cut(s) 516
TseFI GTSAC 1 cut(s) 793
TseI GCWGC 3 cut(s) 155, 560, 746
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 3 cut(s) 386, 506, 987
TspGWI ACGGA 3 cut(s) 106, 173, 1003
TspRI CASTG 1 cut(s) 516
XapI RAATTY 1 cut(s) 905
XceI RCATGY 3 cut(s) 348, 473, 880
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XmaJI CCTAGG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 4 cut(s) 327, 537, 1107, 1202
ZrmI AGTACT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.