Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004107

Physical Location & Seq

Genomic Coordinates Reverse (-)

18314117 .. 18316861

Gene Structure 2745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCAAATGGATTCCGCACAGAATCAGTTCAACAAACGTGCTCGATTGTTTGAAGATCCTGAACTCAAAGATGCTAAGGTCATTTATCCATCGAACCCTGAATCTACTGAACCAGTGAATAAAGGTTATGGCGGTTCTACAGCCATCCAAAGCTTTTTCAAAGAATCTAAAGCTGAAGAAACGCCCAAGGTACTTAAGAAGAGAGGAAGGAAGAAGAAGAATCCTAATCCCGAGGAAGTAAACTCTTCAACTCCCGGTGGAGATGACTCAGAGAACCGCTCAAAGTTCTACGAGAGTGCTTCTGCTAGAAAGAGAACTGTAACTGCAGAGGAAAGAGAGAGAGCCGTCAATGCAGCCAAAACATTCGAACCAACAAATCCTTACTTTAGAGTTGTTCTGCGACCATCATATCTATACAGAGGTTGCATCATGTACTTGCCATCTGGGTTTGCTGAGAAATACCTAAGTGGGATATCTGGTTTCATCAAGCTCCAGCTCGGTGAGAAACAATGGCCAGTGAGGTGCCTCTACAAAGCAGGGAGAGCTAAGTTTAGCCAAGGATGGTATGAGTTCACACTCGAGAACAATATAGGCGAAGGAGATGTATGTGTGTTTGAGCTACTCAGAACTCGGGATTTCGTTCTCGAAGTCACCGCCTTTCGTGTCAATGAGTATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0006950 GO:0008104 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0016020 GO:0031974 GO:0031981 GO:0033036 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051239 GO:0051641 GO:0065007 GO:0070013 GO:0070727 GO:0071944 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

226

Amino Acids

25.85

Weight (kDa)

9.19

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	129 - 222	2.8e-17	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49480 AT1G49480 AT1G49480 AT3G18990 AT3G18990
fragaria_vesca	FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320
malus_domestica	MD05G1072500.v1.1 MD10G1086900.v1.1
prunus_persica	Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1
pyrus_communis	pycom05g06470 pycom10g06930
rosa_chinensis	RchiOBHm_Chr6g0259941
rosa_laevigata	RLG00000014498
rosa_multiflora	Rmu_sc0000414.1_g000006
rosa_roxburghii	Rroxscaffold_7G00207280
rosa_rugosa	Rorug05G0591500
rosa_samantha	Rh6AG108500 Rh6BG103900 Rh6CG097200 Rh6DG090900
rosa_wichuraiana	Rw6G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	522
AccBSI	CCGCTC	1 cut(s)	279
AciI	CCGC	4 cut(s)	15, 132, 277, 654
AclWI	GGATC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	512
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	192, 434
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	4 cut(s)	31, 53, 160, 249
AluBI	AGCT	6 cut(s)	153, 173, 490, 496, 545, 619
AluI	AGCT	6 cut(s)	153, 173, 490, 496, 545, 619
Alw21I	GWGCWC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	50
Ama87I	CYCGRG	3 cut(s)	230, 578, 630
AoxI	GGCC	1 cut(s)	512
ApeKI	GCWGC	1 cut(s)	353
Asp700I	GAANNNNTTC	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	512, 643
AsuII	TTCGAA	1 cut(s)	366
AvaI	CYCGRG	3 cut(s)	230, 578, 630
BalI	TGGCCA	1 cut(s)	514
BanI	GGYRCC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	5 cut(s)	97, 152, 412, 448, 555
BceAI	ACGGC	1 cut(s)	329
BcnI	CCSGG	1 cut(s)	255
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	2 cut(s)	138, 324
BfrI	CTTAAG	1 cut(s)	194
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	255
BmeT110I	CYCGRG	3 cut(s)	230, 578, 630
BmiI	GGNNCC	1 cut(s)	524
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	61, 435
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BpmI	CTGGAG	1 cut(s)	476
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	186, 231, 556
Bse1I	ACTGG	2 cut(s)	113, 515
BseDI	CCNNGG	3 cut(s)	186, 231, 556
BseGI	GGATG	2 cut(s)	144, 566
BseMII	CTCAG	3 cut(s)	282, 444, 637
BseNI	ACTGG	2 cut(s)	113, 515
BseXI	GCAGC	1 cut(s)	365
BshFI	GGCC	1 cut(s)	514
BshNI	GGYRCC	1 cut(s)	522
BsiHKAI	GWGCWC	1 cut(s)	43
BsiHKCI	CYCGRG	3 cut(s)	230, 578, 630
BsiSI	CCGG	1 cut(s)	255
BsnI	GGCC	1 cut(s)	514
BsoBI	CYCGRG	3 cut(s)	230, 578, 630
Bsp119I	TTCGAA	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	55
BspACI	CCGC	4 cut(s)	15, 132, 277, 654
BspANI	GGCC	1 cut(s)	514
BspCNI	CTCAG	3 cut(s)	281, 445, 636
BspLI	GGNNCC	1 cut(s)	524
BspMAI	CTGCAG	1 cut(s)	328
BspPI	GGATC	1 cut(s)	50
BspT104I	TTCGAA	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	522
BspTI	CTTAAG	1 cut(s)	194
BsrBI	CCGCTC	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	113, 515
BssECI	CCNNGG	3 cut(s)	186, 231, 556
BssMI	GATC	1 cut(s)	55
BssT1I	CCWWGG	2 cut(s)	186, 556
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	2 cut(s)	194, 250
BstAFI	CTTAAG	1 cut(s)	194
BstBI	TTCGAA	1 cut(s)	366
BstDEI	CTNAG	6 cut(s)	75, 268, 453, 464, 546, 623
BstF5I	GGATG	2 cut(s)	144, 566
BstKTI	GATC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 542
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	2 cut(s)	138, 324
BstV1I	GCAGC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	514
BtsCI	GGATG	2 cut(s)	144, 566
BtsIMutI	CAGTG	2 cut(s)	120, 522
Csp6I	GTAC	2 cut(s)	191, 433
CviAII	CATG	1 cut(s)	430
CviQI	GTAC	2 cut(s)	191, 433
DdeI	CTNAG	6 cut(s)	75, 268, 453, 464, 546, 623
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	512
Eam1104I	CTCTTC	2 cut(s)	194, 250
EarI	CTCTTC	2 cut(s)	194, 250
Eco130I	CCWWGG	2 cut(s)	186, 556
Eco32I	GATATC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	195
Eco88I	CYCGRG	3 cut(s)	230, 578, 630
EcoRV	GATATC	1 cut(s)	474
EcoT14I	CCWWGG	2 cut(s)	186, 556
ErhI	CCWWGG	2 cut(s)	186, 556
FaeI	CATG	1 cut(s)	433
FaiI	YATR	8 cut(s)	129, 409, 415, 431, 567, 590, 607, 675
FatI	CATG	1 cut(s)	429
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	2 cut(s)	131, 573
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	1 cut(s)	354
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	514
HapII	CCGG	1 cut(s)	255
Hin1II	CATG	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	6 cut(s)	11, 22, 101, 164, 220, 266
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	2 cut(s)	512, 643
Hpy166II	GTNNAC	2 cut(s)	241, 573
Hpy188I	TCNGA	2 cut(s)	271, 626
Hpy188III	TCNNGA	5 cut(s)	59, 230, 580, 632, 644
Hpy8I	GTNNAC	2 cut(s)	241, 573
HpyAV	CCTTC	2 cut(s)	201, 590
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	4 cut(s)	4, 326, 353, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 542
HpyF3I	CTNAG	6 cut(s)	75, 268, 453, 464, 546, 623
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	433
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	495
LpnPI	CCDG	9 cut(s)	72, 111, 126, 268, 429, 462, 506, 522, 528
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	2 cut(s)	61, 435
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	37
MaeIII	GTNAC	2 cut(s)	319, 649
MalI	GATC	1 cut(s)	57
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	1 cut(s)	55
MboII	GAAGA	7 cut(s)	65, 188, 211, 223, 226, 229, 237
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	514
MluNI	TGGCCA	1 cut(s)	514
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	6 cut(s)	197, 226, 322, 413, 513, 536
Mox20I	TGGCCA	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	514
MseI	TTAA	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	514
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	350, 542
NciI	CCSGG	1 cut(s)	255
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	433
NlaIV	GGNNCC	1 cut(s)	524
NmuCI	GTSAC	1 cut(s)	649
NspV	TTCGAA	1 cut(s)	366
PaeR7I	CTCGAG	1 cut(s)	578
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	5 cut(s)	11, 22, 101, 164, 220
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	524
PstI	CTGCAG	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	2 cut(s)	192, 434
RsaNI	GTAC	2 cut(s)	191, 433
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	43
SfaNI	GCATC	2 cut(s)	61, 435
SfcI	CTRYAG	2 cut(s)	138, 324
Sfr274I	CTCGAG	1 cut(s)	578
SfuI	TTCGAA	1 cut(s)	366
SlaI	CTCGAG	1 cut(s)	578
SmlI	CTYRAG	2 cut(s)	194, 578
SmoI	CTYRAG	2 cut(s)	194, 578
SsiI	CCGC	4 cut(s)	15, 132, 277, 654
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	2 cut(s)	186, 556
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	5 cut(s)	43, 92, 366, 579, 645
TatI	WGTACW	1 cut(s)	432
TfiI	GAWTC	5 cut(s)	11, 22, 101, 164, 220
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	2 cut(s)	120, 522
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	1 cut(s)	472
TspRI	CASTG	2 cut(s)	120, 522
Vha464I	CTTAAG	1 cut(s)	194
XhoI	CTCGAG	1 cut(s)	578
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.