Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004107

Physical Location & Seq

Genomic Coordinates Reverse (-)

14150561 .. 14153963

Gene Structure 3403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G113000.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGAAAAACATGATACGCCCTTGTTTTCACAAGCTGATTCTTTCCTCTACTCTCCAAGCCAAACAGCTGATGATCCCAGAAAATTTTGTCAAGAAATTCAGAGACGATCTATCCACCGTTGCTACGTTGAGTGTTCCAGATGGTAATGTTTGGCGTGTAGGAATAAAGAAGGCTGACAACAAGTTTTGGTTTCATGATGGCTGGCAGGAATTCATTGAACGTTATTCAATCCGTGTCGGATACTTTTTAACCTTCCGATATGAAGGACATTCGTCTTTCACTGTTCATATATTTAATTTGACCACTGCTGAGATTAACTATCAACCTAATGCTCTCAGTAGTACTGGAGTGTCTGTTTACAGACATCAAGTATTTGAAGAAATGGAAGACGATGACTCTGTCGAAATCTTGGGTTCCTCCCCTAAATCCATTGTTACTGATTCATTGAGAGACAAGCTCTTTGGCGACTGTGCAAATCAACTGATCCCAGGAAAAGATTATAATCCTCCAGCTCTGCAGAATTTGTTTAATGGCTCCAAACCTAAGAATTGCACGAATTGGCCTGATACAGGGAACCCGCATCCATCAAAGGGTTCTGGTCTACAAGCAGGTAACCAATCTAGTCGAGAGATAGGTGTTCAATTTAATGTAACAGAGCTTAAAAAGACTGTGGATGAAGTTAAATTGCGTAGTTCAGGTGAAGATATACGAAGCATGAAGAAGACTATGAGAAAAAAACGAAAACTTGATCCTACTGTGCAGGATTCTTCCTCTCAACATGAAAAAGAAGTTGAAATCCGCTTTAGATTTTATGAAAGTGCATCTGCAAGGAAGAGAACTGTGACAGCTGAAGAAAGAGAAAGGGCTATTAATGCAGCCAAAACGTTTGAGCCAGTTAATCCTTTTTGCAGGGTTGTCCTTCGACCATCCTATCTATATAGGGGTTGCATAATGTATTTGCCATCCTGCTTTGCTGAAAAGAATTTAAATGGAGTTTCGGGATTCATCAAACTTCAATCCTCTGATGGTAGACAGTGGCCGGTTCGATGCCTTTACAGAGGAGGTAGAGCAAAATTAAGCCAGGGATGGTATGAGTTTACGCTGGAGAACAATTTGGGAGAGGGAGATGTTTGTGTCTTTGAGTTGCTCAAGATGAAGGAGGTGGTGCTGAAAGTTACTGTATTTTGTGTCGTCGAAGCTGCAGGATTTGTGAACCAACCTCCACAGCAAAATGCCAGCCAAGCTAAAATGATTAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0006950 GO:0008104 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0016020 GO:0031974 GO:0031981 GO:0033036 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051239 GO:0051641 GO:0065007 GO:0070013 GO:0070727 GO:0071944 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

421

Amino Acids

47.83

Weight (kDa)

9.17

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49480 AT1G49480 AT1G49480 AT3G18990 AT3G18990
fragaria_vesca	FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320
malus_domestica	MD05G1072500.v1.1 MD10G1086900.v1.1
prunus_persica	Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1
pyrus_communis	pycom05g06470 pycom10g06930
rosa_chinensis	RchiOBHm_Chr6g0259941
rosa_laevigata	RLG00000014498
rosa_multiflora	Rmu_sc0000414.1_g000006
rosa_roxburghii	Rroxscaffold_7G00207280
rosa_rugosa	Rorug05G0591500
rosa_samantha	Rh6AG108500 Rh6BG103900 Rh6CG097200 Rh6DG090900
rosa_wichuraiana	Rw6G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	501
Acc36I	ACCTGC	1 cut(s)	599
AccI	GTMKAC	2 cut(s)	601, 1030
AciI	CCGC	2 cut(s)	578, 799
AclI	AACGTT	2 cut(s)	220, 884
AclWI	GGATC	3 cut(s)	67, 478, 743
AcoI	YGGCCR	1 cut(s)	1037
AcsI	RAATTY	5 cut(s)	82, 95, 209, 520, 982
AcuI	CTGAAG	1 cut(s)	870
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	2 cut(s)	569, 590
AgsI	TTSAA	6 cut(s)	218, 228, 377, 641, 794, 1016
AjnI	CCWGG	2 cut(s)	487, 1080
AluBI	AGCT	8 cut(s)	34, 67, 457, 512, 658, 848, 1199, 1244
AluI	AGCT	8 cut(s)	34, 67, 457, 512, 658, 848, 1199, 1244
Alw26I	GTCTC	2 cut(s)	96, 444
AlwI	GGATC	3 cut(s)	67, 478, 743
AoxI	GGCC	2 cut(s)	560, 1037
ApeKI	GCWGC	2 cut(s)	875, 1199
ApoI	RAATTY	5 cut(s)	82, 95, 209, 520, 982
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AseI	ATTAAT	1 cut(s)	870
AsuHPI	GGTGA	1 cut(s)	710
BbsI	GAAGAC	2 cut(s)	393, 728
BbvI	GCAGC	2 cut(s)	887, 1186
BccI	CCATC	7 cut(s)	134, 191, 592, 934, 970, 1019, 1080
BciT130I	CCWGG	2 cut(s)	489, 1082
BciVI	GTATCC	1 cut(s)	233
BcoDI	GTCTC	2 cut(s)	96, 444
BfaI	CTAG	1 cut(s)	621
BfmI	CTRYAG	2 cut(s)	515, 1200
BfuAI	ACCTGC	1 cut(s)	599
BfuI	GTATCC	1 cut(s)	233
BisI	GCNGC	2 cut(s)	876, 1200
BlsI	GCNGC	2 cut(s)	877, 1201
BmcAI	AGTACT	1 cut(s)	343
Bme1390I	CCNGG	2 cut(s)	489, 1082
BmiI	GGNNCC	3 cut(s)	415, 535, 575
BmrFI	CCNGG	2 cut(s)	489, 1082
BmsI	GCATC	3 cut(s)	589, 830, 1037
BoxI	GACNNNNGTC	1 cut(s)	271
BpiI	GAAGAC	2 cut(s)	393, 728
BplI	GAGNNNNNCTC	2 cut(s)	441, 473
BpmI	CTGGAG	3 cut(s)	366, 492, 1124
BpuEI	CTTGAG	1 cut(s)	1133
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	487, 1081
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	569, 590
Bse118I	RCCGGY	1 cut(s)	1039
Bse1I	ACTGG	2 cut(s)	349, 893
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	489, 1082
BseDI	CCNNGG	2 cut(s)	487, 1081
BseGI	GGATG	5 cut(s)	580, 679, 926, 962, 1091
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	2 cut(s)	569, 590
BseMII	CTCAG	2 cut(s)	300, 349
BseNI	ACTGG	2 cut(s)	349, 893
BseRI	GAGGAG	1 cut(s)	1074
BseXI	GCAGC	2 cut(s)	887, 1186
BsgI	GTGCAG	1 cut(s)	779
BshFI	GGCC	2 cut(s)	562, 1039
BsiSI	CCGG	1 cut(s)	1040
BslI	CCNNNNNNNGG	2 cut(s)	569, 590
BsmAI	GTCTC	2 cut(s)	96, 444
BsmBI	CGTCTC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	562, 1039
Bsp143I	GATC	4 cut(s)	72, 106, 483, 748
BspACI	CCGC	2 cut(s)	578, 799
BspANI	GGCC	2 cut(s)	562, 1039
BspCNI	CTCAG	2 cut(s)	301, 348
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	3 cut(s)	415, 535, 575
BspMAI	CTGCAG	2 cut(s)	519, 1204
BspMI	ACCTGC	1 cut(s)	599
BspPI	GGATC	3 cut(s)	67, 478, 743
BsrFI	RCCGGY	1 cut(s)	1039
BsrI	ACTGG	2 cut(s)	349, 893
BssAI	RCCGGY	1 cut(s)	1039
BssECI	CCNNGG	2 cut(s)	487, 1081
BssMI	GATC	4 cut(s)	72, 106, 483, 748
Bst2UI	CCWGG	2 cut(s)	489, 1082
Bst4CI	ACNGT	8 cut(s)	118, 283, 470, 670, 757, 841, 1035, 1180
Bst6I	CTCTTC	1 cut(s)	827
BstC8I	GCNNGC	2 cut(s)	203, 1237
BstDEI	CTNAG	3 cut(s)	309, 335, 543
BstEII	GGTNACC	1 cut(s)	611
BstENI	CCTNNNNNAGG	1 cut(s)	567
BstF5I	GGATG	5 cut(s)	580, 679, 926, 962, 1091
BstKTI	GATC	4 cut(s)	75, 109, 486, 751
BstMAI	GTCTC	2 cut(s)	96, 444
BstMBI	GATC	4 cut(s)	72, 106, 483, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	872, 1241
BstNI	CCWGG	2 cut(s)	489, 1082
BstPAI	GACNNNNGTC	1 cut(s)	271
BstPI	GGTNACC	1 cut(s)	611
BstSCI	CCNGG	2 cut(s)	487, 1080
BstSFI	CTRYAG	2 cut(s)	515, 1200
BstV1I	GCAGC	2 cut(s)	887, 1186
BstV2I	GAAGAC	2 cut(s)	393, 728
BsuI	GTATCC	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	562, 1039
BtsCI	GGATG	5 cut(s)	580, 679, 926, 962, 1091
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	3 cut(s)	279, 303, 1040
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	2 cut(s)	203, 1237
CciI	TCATGA	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	1039
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	4 cut(s)	10, 194, 715, 779
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	3 cut(s)	309, 335, 543
DpnI	GATC	4 cut(s)	74, 108, 485, 750
DpnII	GATC	4 cut(s)	72, 106, 483, 748
DraI	TTTAAA	1 cut(s)	987
EaeI	YGGCCR	1 cut(s)	1037
Eam1104I	CTCTTC	1 cut(s)	827
EarI	CTCTTC	1 cut(s)	827
Eco57I	CTGAAG	1 cut(s)	870
Eco91I	GGTNACC	1 cut(s)	611
EcoNI	CCTNNNNNAGG	1 cut(s)	567
EcoO65I	GGTNACC	1 cut(s)	611
EcoRI	GAATTC	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	487, 1080
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	4 cut(s)	13, 197, 718, 782
FatI	CATG	4 cut(s)	9, 193, 714, 778
FauI	CCCGC	1 cut(s)	585
FblI	GTMKAC	2 cut(s)	601, 1030
Fnu4HI	GCNGC	2 cut(s)	876, 1200
FokI	GGATG	5 cut(s)	567, 686, 913, 949, 1098
Fsp4HI	GCNGC	2 cut(s)	876, 1200
FspBI	CTAG	1 cut(s)	621
GluI	GCNGC	2 cut(s)	876, 1200
GsuI	CTGGAG	3 cut(s)	366, 492, 1124
HaeIII	GGCC	2 cut(s)	562, 1039
HapII	CCGG	1 cut(s)	1040
Hin1II	CATG	4 cut(s)	13, 197, 718, 782
HinfI	GANTC	5 cut(s)	37, 395, 440, 764, 1002
HpaII	CCGG	1 cut(s)	1040
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	5 cut(s)	358, 602, 1031, 1098, 1213
Hpy188I	TCNGA	4 cut(s)	101, 239, 257, 1024
Hpy188III	TCNNGA	6 cut(s)	91, 137, 194, 626, 999, 1150
Hpy8I	GTNNAC	5 cut(s)	358, 602, 1031, 1098, 1213
Hpy99I	CGWCG	1 cut(s)	1196
HpyAV	CCTTC	5 cut(s)	163, 257, 262, 929, 1150
HpyCH4III	ACNGT	8 cut(s)	118, 283, 470, 670, 757, 841, 1035, 1180
HpyCH4IV	ACGT	3 cut(s)	125, 220, 884
HpyF10VI	GCNNNNNNNGC	2 cut(s)	872, 1241
HpyF3I	CTNAG	3 cut(s)	309, 335, 543
HpySE526I	ACGT	3 cut(s)	125, 220, 884
Hsp92II	CATG	4 cut(s)	13, 197, 718, 782
Kzo9I	GATC	4 cut(s)	72, 106, 483, 748
LmnI	GCTCC	1 cut(s)	539
Lsp1109I	GCAGC	2 cut(s)	887, 1186
LweI	GCATC	3 cut(s)	589, 830, 1037
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	3 cut(s)	125, 220, 884
MaeIII	GTNAC	5 cut(s)	433, 611, 649, 841, 1174
MalI	GATC	4 cut(s)	74, 108, 485, 750
MboI	GATC	4 cut(s)	72, 106, 483, 748
MboII	GAAGA	8 cut(s)	389, 398, 713, 730, 733, 759, 844, 863
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	217
MspA1I	CMGCKG	2 cut(s)	67, 848
MspI	CCGG	1 cut(s)	1040
MspR9I	CCNGG	2 cut(s)	489, 1082
MvaI	CCWGG	2 cut(s)	489, 1082
MwoI	GCNNNNNNNGC	2 cut(s)	872, 1241
NdeII	GATC	4 cut(s)	72, 106, 483, 748
NlaIII	CATG	4 cut(s)	13, 197, 718, 782
NlaIV	GGNNCC	3 cut(s)	415, 535, 575
NmuCI	GTSAC	1 cut(s)	841
PagI	TCATGA	1 cut(s)	193
PfeI	GAWTC	4 cut(s)	37, 440, 764, 1002
PflFI	GACNNNGTC	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	877, 1201
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PshAI	GACNNNNGTC	1 cut(s)	271
PshBI	ATTAAT	1 cut(s)	870
PsiI	TTATAA	1 cut(s)	501
Psp1406I	AACGTT	2 cut(s)	220, 884
Psp6I	CCWGG	2 cut(s)	487, 1080
PspEI	GGTNACC	1 cut(s)	611
PspGI	CCWGG	2 cut(s)	487, 1080
PspN4I	GGNNCC	3 cut(s)	415, 535, 575
PstI	CTGCAG	2 cut(s)	519, 1204
PsyI	GACNNNGTC	1 cut(s)	398
PvuII	CAGCTG	2 cut(s)	67, 848
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SatI	GCNGC	2 cut(s)	876, 1200
Sau3AI	GATC	4 cut(s)	72, 106, 483, 748
ScaI	AGTACT	1 cut(s)	343
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	2 cut(s)	489, 1082
SfaNI	GCATC	3 cut(s)	589, 830, 1037
SfcI	CTRYAG	2 cut(s)	515, 1200
SmiI	ATTTAAAT	1 cut(s)	987
SmlI	CTYRAG	1 cut(s)	1148
SmoI	CTYRAG	1 cut(s)	1148
SsiI	CCGC	2 cut(s)	578, 799
SspMI	CTAG	1 cut(s)	621
StyD4I	CCNGG	2 cut(s)	487, 1080
SwaI	ATTTAAAT	1 cut(s)	987
TaaI	ACNGT	8 cut(s)	118, 283, 470, 670, 757, 841, 1035, 1180
TaiI	ACGT	3 cut(s)	128, 223, 887
TaqI	TCGA	5 cut(s)	402, 625, 922, 1045, 1194
TatI	WGTACW	1 cut(s)	341
TfiI	GAWTC	4 cut(s)	37, 440, 764, 1002
TscAI	CASTG	3 cut(s)	286, 310, 1040
TseFI	GTSAC	1 cut(s)	841
TseI	GCWGC	2 cut(s)	875, 1199
Tsp45I	GTSAC	1 cut(s)	841
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	3 cut(s)	286, 310, 1040
Tth111I	GACNNNGTC	1 cut(s)	398
VspI	ATTAAT	1 cut(s)	870
XagI	CCTNNNNNAGG	1 cut(s)	567
XapI	RAATTY	5 cut(s)	82, 95, 209, 520, 982
XmiI	GTMKAC	2 cut(s)	601, 1030
XspI	CTAG	1 cut(s)	621
ZrmI	AGTACT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.