Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004107

Physical Location & Seq

Genomic Coordinates Reverse (-)

12867779 .. 12871019

Gene Structure 3241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1086900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGAAAATGATGACCCCTTATTTTCACAAGCTGATTGTGTCCTCTACTCTCCAAGCCAAGCAGCTGAGGATCCCGGAAAGTTTTGTCCAGAAATTCAGAAACGATCTTTCTACCATTGCTAAGCTCACTGTTCCTGATGGTCGTGTTTGGCATGTGGGAATAAAGAAGGTTGATAACAAGTTTTGGTTTCACGGTGGTTGGCTAGAGTTCATTGAACATTATTCAATCCGTGTTGGCTACTTTTTAACATTCAGATATGAAGGGCATTCGTCTTTCACCGTCCATATATTTAATTTGAAAACTGCTGAGATTAACTATCAACCTAATGCTCTCAGTAGTACTGGAGGTTCTATTTACCGGTATCAAGTTTTTGAAGAAATGGAAGATGATGACTCTGTTGAAATCTTGGGTTCCTCCCCTACATCCATTGTTACCGATTCTTTGAGAGACAAGCGCTTTGGTGACTCTGCAAATAAACTGATTCCTGGGAAAAATTGTACTCCATTGCTGCAGAATTTGTTTAATGGTTCCAAACCGAAGAATTGCATGAGCAGGAGTGATGCTGGGAACCTGCATCTGTCGAAGGGTGATGATCTACAAGCAGGTAATGAATCTACTCGAGATAATGGTCTTCAATTTAATGTAACAGAGCTTAAAAAGACAGTGGATGAAGTCAAATTGCGTAGTCCAGGTGAAGATACACAAAGCATAAAGAAGACTATGAGAAAAAAGCGGAAGGTTAATCCTGATGTGCAGGAGTCTTCTTCTCAACAAGAAAAAGAAGTGGAAATCCGCTTTCGGTTCTATGAAAGTGCATCTGCAAGGAAGAGAACCGTGACAGCTGAAGAAAGAGAAAGGGCTATCAATGCAGCCAAAACATTTGAGCCAGATAATCCTTTCTGCAGGGTCGTCCTTCGACCATCCTACCTATATAGAGGTTGTATAATGTATTTGCCATCCTGCTTTGCCGAAAAGAATTTAAATGGGGTTTCAGGATTCATCAAACTTCAGTCCGCTGATGGTAGACAATGGTCAGTCCGATGCCTTTATAGAGGAGGTAGAGCAAAATTAAGCCAGGGATGGTATGAGTTTACGATGGATAACAATCTGGGAGAGGGGGATGTTTGTGTCTTTGAATTTCTCAAGATGAAGGACATTGTGCTGAAAGTTACTGTATTTCGCGTTCTTGAAGATGCAGGATTTGTGAACCAGCCTCAAAAGCAACATCTCACCCCCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0006950 GO:0008104 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0016020 GO:0031974 GO:0031981 GO:0033036 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051239 GO:0051641 GO:0065007 GO:0070013 GO:0070727 GO:0071944 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

414

Amino Acids

47.25

Weight (kDa)

9.16

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	9 - 98	9.4e-16	B3 DNA binding domain
B3	PF02362	303 - 394	2.2e-18	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49480 AT1G49480 AT1G49480 AT3G18990 AT3G18990
fragaria_vesca	FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320
malus_domestica	MD05G1072500.v1.1 MD10G1086900.v1.1
prunus_persica	Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1
pyrus_communis	pycom05g06470 pycom10g06930
rosa_chinensis	RchiOBHm_Chr6g0259941
rosa_laevigata	RLG00000014498
rosa_multiflora	Rmu_sc0000414.1_g000006
rosa_roxburghii	Rroxscaffold_7G00207280
rosa_rugosa	Rorug05G0591500
rosa_samantha	Rh6AG108500 Rh6BG103900 Rh6CG097200 Rh6DG090900
rosa_wichuraiana	Rw6G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	579, 593
AccI	GTMKAC	1 cut(s)	1024
AccII	CGCG	1 cut(s)	1182
AciI	CCGC	3 cut(s)	733, 793, 1014
AclWI	GGATC	2 cut(s)	64, 77
AcsI	RAATTY	4 cut(s)	92, 514, 976, 1136
AcuI	CTGAAG	2 cut(s)	864, 992
AfaI	GTAC	2 cut(s)	340, 499
AfeI	AGCGCT	1 cut(s)	455
AgeI	ACCGGT	1 cut(s)	357
AgsI	TTSAA	8 cut(s)	215, 225, 298, 374, 401, 635, 1136, 1190
AjnI	CCWGG	3 cut(s)	484, 688, 1074
AluBI	AGCT	6 cut(s)	31, 64, 124, 652, 842, 1239
AluI	AGCT	6 cut(s)	31, 64, 124, 652, 842, 1239
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	2 cut(s)	64, 77
Ama87I	CYCGRG	1 cut(s)	618
Aor51HI	AGCGCT	1 cut(s)	455
ApeKI	GCWGC	3 cut(s)	61, 508, 869
ApoI	RAATTY	4 cut(s)	92, 514, 976, 1136
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AsiGI	ACCGGT	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	456
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	5 cut(s)	268, 473, 599, 704, 1222
AvaI	CYCGRG	1 cut(s)	618
BamHI	GGATCC	1 cut(s)	69
BbsI	GAAGAC	3 cut(s)	623, 722, 753
BbvCI	CCTCAGC	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	73, 495, 881
BccI	CCATC	6 cut(s)	131, 928, 964, 1013, 1074, 1090
BciT130I	CCWGG	3 cut(s)	486, 690, 1076
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	2 cut(s)	509, 901
BfoI	RGCGCY	1 cut(s)	457
BfuAI	ACCTGC	2 cut(s)	579, 593
BisI	GCNGC	3 cut(s)	62, 509, 870
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	3 cut(s)	63, 510, 871
BmcAI	AGTACT	1 cut(s)	340
Bme1390I	CCNGG	4 cut(s)	74, 486, 690, 1076
BmeT110I	CYCGRG	1 cut(s)	618
BmiI	GGNNCC	4 cut(s)	71, 412, 529, 569
BmrFI	CCNGG	4 cut(s)	74, 486, 690, 1076
BmsI	GCATC	5 cut(s)	550, 583, 824, 1031, 1183
BoxI	GACNNNNGTC	1 cut(s)	1030
BpiI	GAAGAC	3 cut(s)	623, 722, 753
BpmI	CTGGAG	1 cut(s)	363
Bpu10I	CCTNAGC	1 cut(s)	65
Bpu1102I	GCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	1127
BpuMI	CCSGG	1 cut(s)	74
BsaBI	GATNNNNATC	1 cut(s)	1104
BsaJI	CCNNGG	2 cut(s)	485, 1075
BsaWI	WCCGGW	1 cut(s)	357
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	346
Bse3DI	GCAATG	2 cut(s)	114, 503
Bse8I	GATNNNNATC	1 cut(s)	1104
BseBI	CCWGG	3 cut(s)	486, 690, 1076
BseDI	CCNNGG	2 cut(s)	485, 1075
BseGI	GGATG	6 cut(s)	422, 673, 920, 956, 1085, 1126
BseJI	GATNNNNATC	1 cut(s)	1104
BseMI	GCAATG	2 cut(s)	114, 503
BseMII	CTCAG	3 cut(s)	56, 297, 346
BseNI	ACTGG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	1068
BseXI	GCAGC	3 cut(s)	73, 495, 881
BseYI	CCCAGC	2 cut(s)	563, 1235
BsgI	GTGCAG	1 cut(s)	773
Bsh1236I	CGCG	1 cut(s)	1182
BshTI	ACCGGT	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	618
BsiSI	CCGG	2 cut(s)	74, 358
BsmAI	GTCTC	1 cut(s)	441
BsmI	GAATGC	1 cut(s)	265
BsoBI	CYCGRG	1 cut(s)	618
Bsp143I	GATC	3 cut(s)	69, 103, 592
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	3 cut(s)	733, 793, 1014
BspCNI	CTCAG	3 cut(s)	57, 298, 345
BspFNI	CGCG	1 cut(s)	1182
BspLI	GGNNCC	4 cut(s)	71, 412, 529, 569
BspMAI	CTGCAG	2 cut(s)	513, 905
BspMI	ACCTGC	2 cut(s)	579, 593
BspPI	GGATC	2 cut(s)	64, 77
BsrDI	GCAATG	2 cut(s)	114, 503
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	346
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	2 cut(s)	485, 1075
BssMI	GATC	3 cut(s)	69, 103, 592
Bst2UI	CCWGG	3 cut(s)	486, 690, 1076
Bst4CI	ACNGT	6 cut(s)	130, 194, 280, 664, 835, 1174
Bst6I	CTCTTC	1 cut(s)	821
BstDEI	CTNAG	4 cut(s)	65, 120, 306, 332
BstF5I	GGATG	6 cut(s)	422, 673, 920, 956, 1085, 1126
BstFNI	CGCG	1 cut(s)	1182
BstH2I	RGCGCY	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	3 cut(s)	72, 106, 595
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	3 cut(s)	69, 103, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	866, 1219
BstNI	CCWGG	3 cut(s)	486, 690, 1076
BstNSI	RCATGY	1 cut(s)	155
BstPAI	GACNNNNGTC	1 cut(s)	1030
BstSCI	CCNGG	4 cut(s)	72, 484, 688, 1074
BstSFI	CTRYAG	2 cut(s)	509, 901
BstUI	CGCG	1 cut(s)	1182
BstV1I	GCAGC	3 cut(s)	73, 495, 881
BstV2I	GAAGAC	3 cut(s)	623, 722, 753
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BtsCI	GGATG	6 cut(s)	422, 673, 920, 956, 1085, 1126
BtsIMutI	CAGTG	2 cut(s)	126, 669
BveI	ACCTGC	2 cut(s)	579, 593
CfoI	GCGC	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	339, 498
CspAI	ACCGGT	1 cut(s)	357
CviAII	CATG	2 cut(s)	152, 547
CviQI	GTAC	2 cut(s)	339, 498
DdeI	CTNAG	4 cut(s)	65, 120, 306, 332
DpnI	GATC	3 cut(s)	71, 105, 594
DpnII	GATC	3 cut(s)	69, 103, 592
DraI	TTTAAA	1 cut(s)	981
Eam1104I	CTCTTC	1 cut(s)	821
EarI	CTCTTC	1 cut(s)	821
Eco47III	AGCGCT	1 cut(s)	455
Eco57I	CTGAAG	2 cut(s)	864, 992
Eco88I	CYCGRG	1 cut(s)	618
EcoRII	CCWGG	3 cut(s)	484, 688, 1074
FaeI	CATG	2 cut(s)	155, 550
FatI	CATG	2 cut(s)	151, 546
FblI	GTMKAC	1 cut(s)	1024
Fnu4HI	GCNGC	3 cut(s)	62, 509, 870
FokI	GGATG	6 cut(s)	409, 680, 907, 943, 1092, 1133
Fsp4HI	GCNGC	3 cut(s)	62, 509, 870
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	3 cut(s)	62, 509, 870
GsaI	CCCAGC	2 cut(s)	567, 1239
GsuI	CTGGAG	1 cut(s)	363
HaeII	RGCGCY	1 cut(s)	457
HapII	CCGG	2 cut(s)	74, 358
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	2 cut(s)	155, 550
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HinfI	GANTC	7 cut(s)	392, 437, 464, 481, 611, 758, 996
HpaII	CCGG	2 cut(s)	74, 358
HphI	GGTGA	5 cut(s)	268, 473, 599, 704, 1222
Hpy166II	GTNNAC	3 cut(s)	1025, 1092, 1207
Hpy188I	TCNGA	3 cut(s)	98, 254, 1040
Hpy188III	TCNNGA	7 cut(s)	88, 134, 620, 746, 993, 1144, 1187
Hpy8I	GTNNAC	3 cut(s)	1025, 1092, 1207
HpyAV	CCTTC	6 cut(s)	160, 254, 577, 730, 923, 1144
HpyCH4III	ACNGT	6 cut(s)	130, 194, 280, 664, 835, 1174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	866, 1219
HpyF3I	CTNAG	4 cut(s)	65, 120, 306, 332
Hsp92II	CATG	2 cut(s)	155, 550
HspAI	GCGC	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	69, 103, 592
Lsp1109I	GCAGC	3 cut(s)	73, 495, 881
LweI	GCATC	5 cut(s)	550, 583, 824, 1031, 1183
MaeI	CTAG	1 cut(s)	203
MaeIII	GTNAC	5 cut(s)	430, 461, 643, 835, 1168
MalI	GATC	3 cut(s)	71, 105, 594
MboI	GATC	3 cut(s)	69, 103, 592
MflI	RGATCY	1 cut(s)	69
MlyI	GAGTC	3 cut(s)	386, 458, 767
MnlI	CCTC	9 cut(s)	52, 60, 338, 424, 929, 1046, 1049, 1108, 1224
MseI	TTAA	9 cut(s)	245, 291, 312, 522, 639, 654, 741, 980, 1070
MspA1I	CMGCKG	3 cut(s)	64, 842, 1016
MspI	CCGG	2 cut(s)	74, 358
MspR9I	CCNGG	4 cut(s)	74, 486, 690, 1076
Mva1269I	GAATGC	1 cut(s)	265
MvaI	CCWGG	3 cut(s)	486, 690, 1076
MvnI	CGCG	1 cut(s)	1182
MwoI	GCNNNNNNNGC	2 cut(s)	866, 1219
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	3 cut(s)	69, 103, 592
NlaIII	CATG	2 cut(s)	155, 550
NlaIV	GGNNCC	4 cut(s)	71, 412, 529, 569
NmuCI	GTSAC	2 cut(s)	461, 835
NspI	RCATGY	1 cut(s)	155
PaeR7I	CTCGAG	1 cut(s)	618
PctI	GAATGC	1 cut(s)	265
PfeI	GAWTC	4 cut(s)	437, 481, 611, 996
PfoI	TCCNGGA	1 cut(s)	72
PinAI	ACCGGT	1 cut(s)	357
PkrI	GCNGC	3 cut(s)	63, 510, 871
PleI	GAGTC	3 cut(s)	386, 458, 766
PpsI	GAGTC	3 cut(s)	386, 458, 766
PshAI	GACNNNNGTC	1 cut(s)	1030
Psp6I	CCWGG	3 cut(s)	484, 688, 1074
PspFI	CCCAGC	2 cut(s)	563, 1235
PspGI	CCWGG	3 cut(s)	484, 688, 1074
PspN4I	GGNNCC	4 cut(s)	71, 412, 529, 569
PsrI	GAACNNNNNNTAC	4 cut(s)	331, 363, 1167, 1199
PstI	CTGCAG	2 cut(s)	513, 905
PsuI	RGATCY	1 cut(s)	69
PvuII	CAGCTG	2 cut(s)	64, 842
RsaI	GTAC	2 cut(s)	340, 499
RsaNI	GTAC	2 cut(s)	339, 498
SaqAI	TTAA	9 cut(s)	245, 291, 312, 522, 639, 654, 741, 980, 1070
SatI	GCNGC	3 cut(s)	62, 509, 870
Sau3AI	GATC	3 cut(s)	69, 103, 592
ScaI	AGTACT	1 cut(s)	340
SchI	GAGTC	3 cut(s)	386, 458, 767
ScrFI	CCNGG	4 cut(s)	74, 486, 690, 1076
SfaNI	GCATC	5 cut(s)	550, 583, 824, 1031, 1183
SfcI	CTRYAG	2 cut(s)	509, 901
Sfr274I	CTCGAG	1 cut(s)	618
SlaI	CTCGAG	1 cut(s)	618
SmiI	ATTTAAAT	1 cut(s)	981
SmlI	CTYRAG	2 cut(s)	618, 1142
SmoI	CTYRAG	2 cut(s)	618, 1142
SsiI	CCGC	3 cut(s)	733, 793, 1014
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	4 cut(s)	72, 484, 688, 1074
SwaI	ATTTAAAT	1 cut(s)	981
TaaI	ACNGT	6 cut(s)	130, 194, 280, 664, 835, 1174
TaqI	TCGA	3 cut(s)	581, 619, 916
TatI	WGTACW	2 cut(s)	338, 497
TfiI	GAWTC	4 cut(s)	437, 481, 611, 996
Tru1I	TTAA	9 cut(s)	245, 291, 312, 522, 639, 654, 741, 980, 1070
Tru9I	TTAA	9 cut(s)	245, 291, 312, 522, 639, 654, 741, 980, 1070
TscAI	CASTG	2 cut(s)	133, 669
TseFI	GTSAC	2 cut(s)	461, 835
TseI	GCWGC	3 cut(s)	61, 508, 869
Tsp45I	GTSAC	2 cut(s)	461, 835
TspDTI	ATGAA	8 cut(s)	17, 199, 273, 624, 684, 822, 988, 1163
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	2 cut(s)	133, 669
XapI	RAATTY	4 cut(s)	92, 514, 976, 1136
XceI	RCATGY	1 cut(s)	155
XhoI	CTCGAG	1 cut(s)	618
XmiI	GTMKAC	1 cut(s)	1024
XspI	CTAG	1 cut(s)	203
ZrmI	AGTACT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.