Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004107

Physical Location & Seq

Genomic Coordinates Reverse (-)

15277747 .. 15281218

Gene Structure 3472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1072500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGAGGCCCCCTTATTTTCACAAGCTGATTGTGTCTTCTACTCTCCAAGCCAAACAGCTGAGGATCCCGGAAAGTTTTGTCCAGAAATTCAGAAACGAGCTATCTACCATTGCTACGCTCACTGTTCCTGACGGTCATGTTTGGCATGTGGGAGTAAAGAAGGTTGACAACAAGTTTTGGTTTCACAGTGGTTGGCAGGATTTCATTGAACATTATTCAATCCGTGTTGGATACTTTTTAACATTCAGACATGAAGGGCGTTCATCTTTCACTGTCCATATATTTAATTTGAAAACTGCTGAGATTAACTATCAACCTAACGCTCTCAGTAGTACTGGAGGTTCTGTTTACCGGTATCAAGTATTTGAAGAGATGGAAGATGATGACTCTGTTGAAATCTTGGGTTCGTCCCCTACATCCATTGTTACCGATTCTTTGAAAGACAAGTGCTTTGGTGACTCTGCAAATCAACTGACTCCTGGGAAAAATTGTACTCCTCCATCGCTGCAGAATTTGTTTAATGGTTCCAAACCTAAGAATTGCGTGAACTGGAGTGATGCTGGGAACCTGCATCTATCGAAGGGTGATGATCTACAAGCAGGTAATGAATCTACTCGAGATATTGGTGTTCAATTTAATGTAACAGAGCTTAAAAAGACAGTGGATGAAGTCAAATTGCGTAGTCCAGGTGAAGACATACGAAGCATAAAGAAGACTGTGAGAAAAAAGCGGAAGGTTAATCCTAATGTGGAGGAGTCTTCTTCTCAACACGAAAAAGAAGTGGAAATTCGCTTTCGATTTTATGAAAGTGCGTCTGCAAGGAAGAGAACCGTGACAGCCGAAGAAAGAGAAAGGGCTATTAATGCGGCCAAAACATTTGAGCCAGTTAATCCTTTCTGTAGGGTAGTCCTTCGACCATCCTACCTATATAGGGGTTGTATAATGTATTTGCCATCCTGCTTTGCCGAAAAGAATTTAAATGGGGTTTCAGGATTTATCAAACTTCAGTCCGCTGATGGCAGACAATGGTCAGTCCGATGCCTTTATAGAGGAGGTAGAGCAAAATTAAGCCAGGGATGGTATGAGTTTACGATGGATAACAATCTGGGGGAGGGGGACGTTTGTGTCTTTGAGTTGCTCAAAATGAAGGACATTGTGCTGAAAGTTACTGTATTTCGCGTCCTTGAAGATGCAGGATTTGTGAACCAGCCTCAACTGCAAAATCTCACCCCAGCTAAACCGAATAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0006950 GO:0008104 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0016020 GO:0031974 GO:0031981 GO:0033036 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051239 GO:0051641 GO:0065007 GO:0070013 GO:0070727 GO:0071944 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

418

Amino Acids

47.49

Weight (kDa)

9.08

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	7 - 96	2.9e-16	B3 DNA binding domain
B3	PF02362	302 - 393	9.4e-19	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49480 AT1G49480 AT1G49480 AT3G18990 AT3G18990
fragaria_vesca	FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320
malus_domestica	MD05G1072500.v1.1 MD10G1086900.v1.1
prunus_persica	Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1
pyrus_communis	pycom05g06470 pycom10g06930
rosa_chinensis	RchiOBHm_Chr6g0259941
rosa_laevigata	RLG00000014498
rosa_multiflora	Rmu_sc0000414.1_g000006
rosa_roxburghii	Rroxscaffold_7G00207280
rosa_rugosa	Rorug05G0591500
rosa_samantha	Rh6AG108500 Rh6BG103900 Rh6CG097200 Rh6DG090900
rosa_wichuraiana	Rw6G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1124
Acc36I	ACCTGC	2 cut(s)	576, 590
AccII	CGCG	1 cut(s)	1179
AciI	CCGC	3 cut(s)	730, 866, 1011
AclWI	GGATC	2 cut(s)	58, 71
AcoI	YGGCCR	1 cut(s)	867
AcsI	RAATTY	4 cut(s)	86, 511, 786, 973
AcuI	CTGAAG	1 cut(s)	989
AfaI	GTAC	2 cut(s)	334, 493
AfiI	CCNNNNNNNGG	1 cut(s)	931
AgeI	ACCGGT	1 cut(s)	351
AgsI	TTSAA	8 cut(s)	209, 219, 292, 368, 395, 439, 632, 1187
AjnI	CCWGG	3 cut(s)	478, 685, 1071
AluBI	AGCT	5 cut(s)	25, 58, 100, 649, 1235
AluI	AGCT	5 cut(s)	25, 58, 100, 649, 1235
AlwI	GGATC	2 cut(s)	58, 71
Ama87I	CYCGRG	1 cut(s)	615
AoxI	GGCC	2 cut(s)	5, 867
ApeKI	GCWGC	1 cut(s)	505
ApoI	RAATTY	4 cut(s)	86, 511, 786, 973
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AseI	ATTAAT	1 cut(s)	861
AsiGI	ACCGGT	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	6
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	4 cut(s)	467, 596, 701, 1219
AvaI	CYCGRG	1 cut(s)	615
BamHI	GGATCC	1 cut(s)	63
BbsI	GAAGAC	4 cut(s)	27, 699, 719, 750
BbvCI	CCTCAGC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	492
BccI	CCATC	7 cut(s)	367, 508, 925, 961, 1010, 1071, 1087
BciT130I	CCWGG	3 cut(s)	480, 687, 1073
BciVI	GTATCC	1 cut(s)	224
BcnI	CCSGG	1 cut(s)	68
BfmI	CTRYAG	2 cut(s)	506, 898
BfuAI	ACCTGC	2 cut(s)	576, 590
BfuI	GTATCC	1 cut(s)	224
BisI	GCNGC	2 cut(s)	506, 867
BlsI	GCNGC	2 cut(s)	507, 868
BmcAI	AGTACT	1 cut(s)	334
Bme1390I	CCNGG	4 cut(s)	68, 480, 687, 1073
BmeT110I	CYCGRG	1 cut(s)	615
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	4 cut(s)	8, 65, 526, 566
BmrFI	CCNGG	4 cut(s)	68, 480, 687, 1073
BmsI	GCATC	4 cut(s)	547, 580, 1028, 1180
BoxI	GACNNNNGTC	1 cut(s)	1027
BpiI	GAAGAC	4 cut(s)	27, 699, 719, 750
BpmI	CTGGAG	2 cut(s)	357, 571
Bpu10I	CCTNAGC	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	1101
BsaJI	CCNNGG	2 cut(s)	479, 1072
BsaWI	WCCGGW	1 cut(s)	351
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	931
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	3 cut(s)	340, 554, 884
Bse3DI	GCAATG	1 cut(s)	108
Bse8I	GATNNNNATC	1 cut(s)	1101
BseBI	CCWGG	3 cut(s)	480, 687, 1073
BseDI	CCNNGG	2 cut(s)	479, 1072
BseGI	GGATG	5 cut(s)	416, 670, 917, 953, 1082
BseJI	GATNNNNATC	1 cut(s)	1101
BseLI	CCNNNNNNNGG	1 cut(s)	931
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	3 cut(s)	50, 291, 340
BseNI	ACTGG	3 cut(s)	340, 554, 884
BseRI	GAGGAG	3 cut(s)	486, 767, 1065
BseXI	GCAGC	1 cut(s)	492
BseYI	CCCAGC	2 cut(s)	560, 1231
Bsh1236I	CGCG	1 cut(s)	1179
BshFI	GGCC	2 cut(s)	7, 869
BshTI	ACCGGT	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	615
BsiSI	CCGG	2 cut(s)	68, 352
BslFI	GGGAC	2 cut(s)	394, 1130
BslI	CCNNNNNNNGG	1 cut(s)	931
BsmFI	GGGAC	2 cut(s)	394, 1130
BsnI	GGCC	2 cut(s)	7, 869
BsoBI	CYCGRG	1 cut(s)	615
Bsp143I	GATC	2 cut(s)	63, 589
BspACI	CCGC	3 cut(s)	730, 866, 1011
BspANI	GGCC	2 cut(s)	7, 869
BspCNI	CTCAG	3 cut(s)	51, 292, 339
BspFNI	CGCG	1 cut(s)	1179
BspLI	GGNNCC	4 cut(s)	8, 65, 526, 566
BspMAI	CTGCAG	1 cut(s)	510
BspMI	ACCTGC	2 cut(s)	576, 590
BspPI	GGATC	2 cut(s)	58, 71
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	351
BsrI	ACTGG	3 cut(s)	340, 554, 884
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	2 cut(s)	479, 1072
BssMI	GATC	2 cut(s)	63, 589
Bst2UI	CCWGG	3 cut(s)	480, 687, 1073
Bst4CI	ACNGT	8 cut(s)	124, 134, 188, 274, 661, 718, 832, 1171
Bst6I	CTCTTC	2 cut(s)	363, 818
BstDEI	CTNAG	4 cut(s)	59, 300, 326, 534
BstF5I	GGATG	5 cut(s)	416, 670, 917, 953, 1082
BstFNI	CGCG	1 cut(s)	1179
BstKTI	GATC	2 cut(s)	66, 592
BstMBI	GATC	2 cut(s)	63, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	863, 1216
BstNI	CCWGG	3 cut(s)	480, 687, 1073
BstNSI	RCATGY	1 cut(s)	149
BstPAI	GACNNNNGTC	1 cut(s)	1027
BstSCI	CCNGG	4 cut(s)	66, 478, 685, 1071
BstSFI	CTRYAG	2 cut(s)	506, 898
BstUI	CGCG	1 cut(s)	1179
BstV1I	GCAGC	1 cut(s)	492
BstV2I	GAAGAC	4 cut(s)	27, 699, 719, 750
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BsuI	GTATCC	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	7, 869
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	5 cut(s)	416, 670, 917, 953, 1082
BtsIMutI	CAGTG	4 cut(s)	120, 193, 270, 666
BveI	ACCTGC	2 cut(s)	576, 590
Cfr10I	RCCGGY	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	6
CseI	GACGC	2 cut(s)	801, 1168
Csp6I	GTAC	2 cut(s)	333, 492
CspAI	ACCGGT	1 cut(s)	351
CviAII	CATG	3 cut(s)	137, 146, 251
CviQI	GTAC	2 cut(s)	333, 492
DdeI	CTNAG	4 cut(s)	59, 300, 326, 534
DpnI	GATC	2 cut(s)	65, 591
DpnII	GATC	2 cut(s)	63, 589
DraI	TTTAAA	1 cut(s)	978
DrdI	GACNNNNNNGTC	1 cut(s)	1124
DseDI	GACNNNNNNGTC	1 cut(s)	1124
EaeI	YGGCCR	1 cut(s)	867
Eam1104I	CTCTTC	2 cut(s)	363, 818
EarI	CTCTTC	2 cut(s)	363, 818
Eco57I	CTGAAG	1 cut(s)	989
Eco88I	CYCGRG	1 cut(s)	615
EcoO109I	RGGNCCY	1 cut(s)	6
EcoRII	CCWGG	3 cut(s)	478, 685, 1071
FaeI	CATG	3 cut(s)	140, 149, 254
FaqI	GGGAC	2 cut(s)	394, 1130
FatI	CATG	3 cut(s)	136, 145, 250
Fnu4HI	GCNGC	2 cut(s)	506, 867
FokI	GGATG	5 cut(s)	403, 677, 904, 940, 1089
Fsp4HI	GCNGC	2 cut(s)	506, 867
GluI	GCNGC	2 cut(s)	506, 867
GsaI	CCCAGC	2 cut(s)	564, 1235
GsuI	CTGGAG	2 cut(s)	357, 571
HaeIII	GGCC	2 cut(s)	7, 869
HapII	CCGG	2 cut(s)	68, 352
HgaI	GACGC	2 cut(s)	801, 1168
Hin1II	CATG	3 cut(s)	140, 149, 254
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	6 cut(s)	386, 431, 458, 475, 608, 755
HpaII	CCGG	2 cut(s)	68, 352
HphI	GGTGA	4 cut(s)	467, 596, 701, 1219
Hpy166II	GTNNAC	5 cut(s)	166, 349, 547, 1089, 1204
Hpy188I	TCNGA	3 cut(s)	92, 248, 1037
Hpy188III	TCNNGA	4 cut(s)	82, 128, 617, 990
Hpy8I	GTNNAC	5 cut(s)	166, 349, 547, 1089, 1204
HpyAV	CCTTC	6 cut(s)	154, 248, 574, 727, 920, 1141
HpyCH4III	ACNGT	8 cut(s)	124, 134, 188, 274, 661, 718, 832, 1171
HpyCH4IV	ACGT	1 cut(s)	1119
HpyCH4V	TGCA	6 cut(s)	464, 508, 571, 818, 1193, 1219
HpyF10VI	GCNNNNNNNGC	2 cut(s)	863, 1216
HpyF3I	CTNAG	4 cut(s)	59, 300, 326, 534
HpySE526I	ACGT	1 cut(s)	1119
Hsp92II	CATG	3 cut(s)	140, 149, 254
Kzo9I	GATC	2 cut(s)	63, 589
Lsp1109I	GCAGC	1 cut(s)	492
LweI	GCATC	4 cut(s)	547, 580, 1028, 1180
MaeII	ACGT	1 cut(s)	1119
MaeIII	GTNAC	5 cut(s)	424, 455, 640, 832, 1165
MalI	GATC	2 cut(s)	65, 591
MboI	GATC	2 cut(s)	63, 589
MflI	RGATCY	1 cut(s)	63
MlyI	GAGTC	4 cut(s)	380, 452, 469, 764
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	8 cut(s)	54, 332, 507, 745, 1043, 1046, 1105, 1221
MspA1I	CMGCKG	2 cut(s)	58, 1013
MspI	CCGG	2 cut(s)	68, 352
MspR9I	CCNGG	4 cut(s)	68, 480, 687, 1073
MvaI	CCWGG	3 cut(s)	480, 687, 1073
MvnI	CGCG	1 cut(s)	1179
MwoI	GCNNNNNNNGC	2 cut(s)	863, 1216
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	2 cut(s)	63, 589
NlaIII	CATG	3 cut(s)	140, 149, 254
NlaIV	GGNNCC	4 cut(s)	8, 65, 526, 566
NmuCI	GTSAC	2 cut(s)	455, 832
NspI	RCATGY	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	615
PfeI	GAWTC	2 cut(s)	431, 608
PfoI	TCCNGGA	1 cut(s)	66
PinAI	ACCGGT	1 cut(s)	351
PkrI	GCNGC	2 cut(s)	507, 868
PleI	GAGTC	4 cut(s)	380, 452, 469, 763
PpsI	GAGTC	4 cut(s)	380, 452, 469, 763
PshAI	GACNNNNGTC	1 cut(s)	1027
PshBI	ATTAAT	1 cut(s)	861
Psp6I	CCWGG	3 cut(s)	478, 685, 1071
PspFI	CCCAGC	2 cut(s)	560, 1231
PspGI	CCWGG	3 cut(s)	478, 685, 1071
PspN4I	GGNNCC	4 cut(s)	8, 65, 526, 566
PspPI	GGNCC	1 cut(s)	6
PsrI	GAACNNNNNNTAC	2 cut(s)	325, 357
PstI	CTGCAG	1 cut(s)	510
PsuI	RGATCY	1 cut(s)	63
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	2 cut(s)	334, 493
RsaNI	GTAC	2 cut(s)	333, 492
SatI	GCNGC	2 cut(s)	506, 867
Sau3AI	GATC	2 cut(s)	63, 589
Sau96I	GGNCC	1 cut(s)	6
ScaI	AGTACT	1 cut(s)	334
SchI	GAGTC	4 cut(s)	380, 452, 469, 764
ScrFI	CCNGG	4 cut(s)	68, 480, 687, 1073
SfaNI	GCATC	4 cut(s)	547, 580, 1028, 1180
SfcI	CTRYAG	2 cut(s)	506, 898
Sfr274I	CTCGAG	1 cut(s)	615
SlaI	CTCGAG	1 cut(s)	615
SmiI	ATTTAAAT	1 cut(s)	978
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
SsiI	CCGC	3 cut(s)	730, 866, 1011
StyD4I	CCNGG	4 cut(s)	66, 478, 685, 1071
SwaI	ATTTAAAT	1 cut(s)	978
TaaI	ACNGT	8 cut(s)	124, 134, 188, 274, 661, 718, 832, 1171
TaiI	ACGT	1 cut(s)	1122
TaqI	TCGA	4 cut(s)	578, 616, 796, 913
TatI	WGTACW	2 cut(s)	332, 491
TauI	GCSGC	1 cut(s)	869
TfiI	GAWTC	2 cut(s)	431, 608
TscAI	CASTG	4 cut(s)	127, 193, 277, 666
TseFI	GTSAC	2 cut(s)	455, 832
TseI	GCWGC	1 cut(s)	505
Tsp45I	GTSAC	2 cut(s)	455, 832
TspDTI	ATGAA	7 cut(s)	193, 252, 267, 621, 681, 819, 1160
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	4 cut(s)	127, 193, 277, 666
VspI	ATTAAT	1 cut(s)	861
XapI	RAATTY	4 cut(s)	86, 511, 786, 973
XceI	RCATGY	1 cut(s)	149
XhoI	CTCGAG	1 cut(s)	615
ZrmI	AGTACT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.