Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004107

Physical Location & Seq

Genomic Coordinates Reverse (-)

8894862 .. 8895263

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g06470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTATTTGCCATCCTGCTTTGCCGAAAAGAATTTAAATGGGGTTTCAGGATTCATCAAACTTCAGTCCGCTGATGGCAGACAATGGTCAGTCCGATGCCTTTACAGAGGAGGTAGAGTAAAATTAAGTCAGGGATGGTATGAGTTTACGATGGATAACAATCTGGGGGAGGGGGATGTTTGTGTCTTTGAGTTGCTCAAAATGAAGGACATTGTGCTGAAAGTTACTGTATTTCGCGTCCTTGAAGATGCAGGATTTGTGAACCAGCCTCAACTGCAAAATCTCACCCCAGCTAAACCGAATAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0006950 GO:0008104 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0016020 GO:0031974 GO:0031981 GO:0033036 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051239 GO:0051641 GO:0065007 GO:0070013 GO:0070727 GO:0071944 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

104

Amino Acids

11.7

Weight (kDa)

8.88

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	1 - 79	1.7e-17	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49480 AT1G49480 AT1G49480 AT3G18990 AT3G18990
fragaria_vesca	FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320
malus_domestica	MD05G1072500.v1.1 MD10G1086900.v1.1
prunus_persica	Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1
pyrus_communis	pycom05g06470 pycom10g06930
rosa_chinensis	RchiOBHm_Chr6g0259941
rosa_laevigata	RLG00000014498
rosa_multiflora	Rmu_sc0000414.1_g000006
rosa_roxburghii	Rroxscaffold_7G00207280
rosa_rugosa	Rorug05G0591500
rosa_samantha	Rh6AG108500 Rh6BG103900 Rh6CG097200 Rh6DG090900
rosa_wichuraiana	Rw6G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	237
AciI	CCGC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	245
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	277
BccI	CCATC	4 cut(s)	19, 68, 129, 145
BmsI	GCATC	2 cut(s)	86, 238
BoxI	GACNNNNGTC	1 cut(s)	85
BsaBI	GATNNNNATC	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bse8I	GATNNNNATC	1 cut(s)	159
BseGI	GGATG	3 cut(s)	11, 140, 181
BseJI	GATNNNNATC	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	123
BseYI	CCCAGC	1 cut(s)	289
Bsh1236I	CGCG	1 cut(s)	237
BspACI	CCGC	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	229
BstF5I	GGATG	3 cut(s)	11, 140, 181
BstFNI	CGCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstPAI	GACNNNNGTC	1 cut(s)	85
BstUI	CGCG	1 cut(s)	237
BtsCI	GGATG	3 cut(s)	11, 140, 181
CseI	GACGC	1 cut(s)	226
CviJI	RGCY	2 cut(s)	268, 293
CviKI_1	RGCY	2 cut(s)	268, 293
DraI	TTTAAA	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	47
FaiI	YATR	1 cut(s)	141
FokI	GGATG	2 cut(s)	147, 188
GsaI	CCCAGC	1 cut(s)	293
HgaI	GACGC	1 cut(s)	226
HinfI	GANTC	1 cut(s)	51
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	2 cut(s)	147, 262
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	2 cut(s)	147, 262
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	251, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
LpnPI	CCDG	7 cut(s)	28, 33, 116, 149, 237, 278, 303
LweI	GCATC	2 cut(s)	86, 238
MaeIII	GTNAC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	257
MluCI	AATT	3 cut(s)	31, 122, 307
MnlI	CCTC	4 cut(s)	101, 104, 163, 279
MseI	TTAA	2 cut(s)	35, 125
MspA1I	CMGCKG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	51
PshAI	GACNNNNGTC	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	35, 125
SetI	ASST	2 cut(s)	115, 295
SfaNI	GCATC	2 cut(s)	86, 238
SgeI	CNNG	9 cut(s)	27, 60, 143, 176, 248, 254, 264, 277, 302
SmiI	ATTTAAAT	1 cut(s)	36
Sse9I	AATT	3 cut(s)	31, 122, 307
SsiI	CCGC	1 cut(s)	69
SwaI	ATTTAAAT	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	229
TasI	AATT	3 cut(s)	31, 122, 307
TfiI	GAWTC	1 cut(s)	51
Tru1I	TTAA	2 cut(s)	35, 125
Tru9I	TTAA	2 cut(s)	35, 125
TspDTI	ATGAA	2 cut(s)	43, 218
XapI	RAATTY	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.