Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004107

Physical Location & Seq

Genomic Coordinates Forward (+)

6044154 .. 6047948

Gene Structure 3795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07320.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGAAGATGAGGACTCAGTTGAAATCATGGGTTCCTCCCCTTCATCCATCGTTACTAATACTATGAGAGACAAGCTCTTTGGGGACGTTGCAAATCAACTGACTCCTGGAAAGAATTATAGTCCTCCATCGTTGCAGAATTTGTTCAATGGTGCTAAGCATAACTGGACTGATGCTGGGAAGCTTCATACACCGAAGGTTACTGGATTACAAGGTAATAATTCTACGCAAGATAATGGTACTGAGCGTAAGAAGAGTAAAAAGGCTGTGGACGAAGTCAAATCATGTACTCCAGGTGAAGGTACACAAAGCGATAAGAAGACTGTAAGGAAAAGGCGGAAACGTGATCCTAATGTGCAGGAGTCATCTGCTCAACATGAACAGGATGTAGAAATCCGTTTTAGATTTTATGAAAGTGCATCTGCAAGGAAGAGAACTGTGACAGCTGAAGAAAGAGAGAGGGCTGTTAATCTCGCCAAAACATTTGAGCCGGTTAATCCTTTCTGCAGGGTGGTTCTTCGACCATCATATCTATATAGGGGATGTATAATGTATTTGCCATCCTGCTTTGCTGAAAAGAATTTAAGTGGGGTTTCAGGATTTATAAAACTTCAATCTGCTGATGGTAAACAGTGGCCTGTTCGATGCCTTTACAGAGGAGGGAGAGCAAAATTAAGTCAGGGATGGTATGAGTTTACGGTGGAGAATAATTTGTTAGAGGGGGATGTTTGTGTGTTTGAGTTGCTCAAGACTAAGGAGATTGTGCTGAAAGTTAACGTATTTCGTGTCCAAGAAGAAGATGCTGGATTTGTAACCCAATCATATGGGAACCAACCTTCAGGGCAAAATATAATTCAGGCCATACCGCTTCGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005886 GO:0006950 GO:0008104 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0016020 GO:0031974 GO:0031981 GO:0033036 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051179 GO:0051239 GO:0051641 GO:0065007 GO:0070013 GO:0070727 GO:0071944 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

293

Amino Acids

32.84

Weight (kDa)

9.12

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	199 - 291	8.6e-19	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49480 AT1G49480 AT1G49480 AT3G18990 AT3G18990
fragaria_vesca	FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320
malus_domestica	MD05G1072500.v1.1 MD10G1086900.v1.1
prunus_persica	Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1
pyrus_communis	pycom05g06470 pycom10g06930
rosa_chinensis	RchiOBHm_Chr6g0259941
rosa_laevigata	RLG00000014498
rosa_multiflora	Rmu_sc0000414.1_g000006
rosa_roxburghii	Rroxscaffold_7G00207280
rosa_rugosa	Rorug05G0591500
rosa_samantha	Rh6AG108500 Rh6BG103900 Rh6CG097200 Rh6DG090900
rosa_wichuraiana	Rw6G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	605
AciI	CCGC	2 cut(s)	337, 866
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	2 cut(s)	139, 580
AcuI	CTGAAG	2 cut(s)	468, 822
AfaI	GTAC	3 cut(s)	241, 289, 304
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	3 cut(s)	23, 148, 614
AjnI	CCWGG	2 cut(s)	106, 292
AluBI	AGCT	3 cut(s)	76, 184, 446
AluI	AGCT	3 cut(s)	76, 184, 446
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	2 cut(s)	635, 858
ApoI	RAATTY	2 cut(s)	139, 580
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
Asp700I	GAANNNNTTC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	308
AsuII	TTCGAA	1 cut(s)	871
BbsI	GAAGAC	1 cut(s)	326
BccI	CCATC	6 cut(s)	56, 136, 532, 568, 617, 678
BciT130I	CCWGG	2 cut(s)	108, 294
BcoDI	GTCTC	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	505
BlpI	GCTNAGC	1 cut(s)	156
Bme1390I	CCNGG	2 cut(s)	108, 294
BmiI	GGNNCC	2 cut(s)	34, 830
BmrFI	CCNGG	2 cut(s)	108, 294
BmsI	GCATC	4 cut(s)	163, 428, 635, 790
BpiI	GAAGAC	1 cut(s)	326
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpmI	CTGGAG	1 cut(s)	276
Bpu1102I	GCTNAGC	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	871
BpuEI	CTTGAG	1 cut(s)	731
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	2 cut(s)	170, 208
BseBI	CCWGG	2 cut(s)	108, 294
BseGI	GGATG	6 cut(s)	44, 391, 548, 560, 689, 730
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMII	CTCAG	2 cut(s)	30, 234
BseNI	ACTGG	2 cut(s)	170, 208
BseRI	GAGGAG	1 cut(s)	672
BseYI	CCCAGC	1 cut(s)	176
BsgI	GTGCAG	1 cut(s)	377
BshFI	GGCC	2 cut(s)	637, 860
BsiSI	CCGG	1 cut(s)	491
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	637, 860
Bsp119I	TTCGAA	1 cut(s)	871
Bsp143I	GATC	1 cut(s)	346
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	337, 866
BspANI	GGCC	2 cut(s)	637, 860
BspCNI	CTCAG	2 cut(s)	29, 235
BspLI	GGNNCC	2 cut(s)	34, 830
BspMAI	CTGCAG	1 cut(s)	509
BspPI	GGATC	1 cut(s)	341
BspT104I	TTCGAA	1 cut(s)	871
BsrFI	RCCGGY	1 cut(s)	490
BsrI	ACTGG	2 cut(s)	170, 208
BssAI	RCCGGY	1 cut(s)	490
BssMI	GATC	1 cut(s)	346
Bst2UI	CCWGG	2 cut(s)	108, 294
Bst4CI	ACNGT	4 cut(s)	325, 439, 633, 700
Bst6I	CTCTTC	2 cut(s)	248, 425
BstBI	TTCGAA	1 cut(s)	871
BstDEI	CTNAG	4 cut(s)	16, 156, 243, 753
BstF5I	GGATG	6 cut(s)	44, 391, 548, 560, 689, 730
BstKTI	GATC	1 cut(s)	349
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	346
BstNI	CCWGG	2 cut(s)	108, 294
BstSCI	CCNGG	2 cut(s)	106, 292
BstSFI	CTRYAG	1 cut(s)	505
BstV2I	GAAGAC	1 cut(s)	326
BstXI	CCANNNNNNTGG	1 cut(s)	824
BsuRI	GGCC	2 cut(s)	637, 860
BtsCI	GGATG	6 cut(s)	44, 391, 548, 560, 689, 730
BtsIMutI	CAGTG	1 cut(s)	638
Cfr10I	RCCGGY	1 cut(s)	490
Csp6I	GTAC	3 cut(s)	240, 288, 303
CviAII	CATG	3 cut(s)	28, 285, 377
CviJI	RGCY	8 cut(s)	76, 184, 266, 446, 464, 490, 637, 860
CviKI_1	RGCY	8 cut(s)	76, 184, 266, 446, 464, 490, 637, 860
CviQI	GTAC	3 cut(s)	240, 288, 303
DdeI	CTNAG	4 cut(s)	16, 156, 243, 753
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
Eam1104I	CTCTTC	2 cut(s)	248, 425
EarI	CTCTTC	2 cut(s)	248, 425
EciI	GGCGGA	1 cut(s)	352
Eco57I	CTGAAG	2 cut(s)	468, 822
EcoRII	CCWGG	2 cut(s)	106, 292
FaeI	CATG	3 cut(s)	31, 288, 380
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	3 cut(s)	27, 284, 376
FauNDI	CATATG	1 cut(s)	823
FokI	GGATG	6 cut(s)	31, 398, 547, 555, 696, 737
GsaI	CCCAGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	637, 860
HapII	CCGG	1 cut(s)	491
Hin1II	CATG	3 cut(s)	31, 288, 380
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	3 cut(s)	14, 103, 362
HpaI	GTTAAC	1 cut(s)	775
HpaII	CCGG	1 cut(s)	491
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	5 cut(s)	271, 305, 629, 696, 775
Hpy188III	TCNNGA	2 cut(s)	597, 748
Hpy8I	GTNNAC	5 cut(s)	271, 305, 629, 696, 775
HpyAV	CCTTC	4 cut(s)	51, 190, 293, 846
HpyCH4III	ACNGT	4 cut(s)	325, 439, 633, 700
HpyCH4IV	ACGT	3 cut(s)	87, 343, 777
HpyCH4V	TGCA	6 cut(s)	92, 136, 358, 419, 425, 507
HpyF3I	CTNAG	4 cut(s)	16, 156, 243, 753
HpySE526I	ACGT	3 cut(s)	87, 343, 777
Hsp92II	CATG	3 cut(s)	31, 288, 380
KspAI	GTTAAC	1 cut(s)	775
Kzo9I	GATC	1 cut(s)	346
LweI	GCATC	4 cut(s)	163, 428, 635, 790
MaeII	ACGT	3 cut(s)	87, 343, 777
MaeIII	GTNAC	4 cut(s)	52, 199, 439, 811
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	8 cut(s)	17, 265, 331, 442, 461, 509, 806, 809
MluCI	AATT	8 cut(s)	115, 139, 220, 580, 671, 709, 852, 874
MlyI	GAGTC	3 cut(s)	8, 97, 371
MnlI	CCTC	7 cut(s)	4, 46, 135, 453, 650, 653, 712
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	5 cut(s)	468, 495, 584, 674, 774
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	108, 294
MvaI	CCWGG	2 cut(s)	108, 294
NdeI	CATATG	1 cut(s)	823
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	3 cut(s)	31, 288, 380
NlaIV	GGNNCC	2 cut(s)	34, 830
NmuCI	GTSAC	1 cut(s)	439
NspV	TTCGAA	1 cut(s)	871
PdmI	GAANNNNTTC	1 cut(s)	143
PflFI	GACNNNGTC	1 cut(s)	275
PfoI	TCCNGGA	1 cut(s)	106
PleI	GAGTC	3 cut(s)	8, 97, 370
PpsI	GAGTC	3 cut(s)	8, 97, 370
PsiI	TTATAA	1 cut(s)	605
Psp6I	CCWGG	2 cut(s)	106, 292
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	2 cut(s)	106, 292
PspN4I	GGNNCC	2 cut(s)	34, 830
PstI	CTGCAG	1 cut(s)	509
PsyI	GACNNNGTC	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	3 cut(s)	241, 289, 304
RsaNI	GTAC	3 cut(s)	240, 288, 303
SaqAI	TTAA	5 cut(s)	468, 495, 584, 674, 774
Sau3AI	GATC	1 cut(s)	346
SchI	GAGTC	3 cut(s)	8, 97, 371
ScrFI	CCNGG	2 cut(s)	108, 294
SfaNI	GCATC	4 cut(s)	163, 428, 635, 790
SfcI	CTRYAG	1 cut(s)	505
SfuI	TTCGAA	1 cut(s)	871
SmlI	CTYRAG	1 cut(s)	746
SmoI	CTYRAG	1 cut(s)	746
Sse9I	AATT	8 cut(s)	115, 139, 220, 580, 671, 709, 852, 874
SsiI	CCGC	2 cut(s)	337, 866
StyD4I	CCNGG	2 cut(s)	106, 292
TaaI	ACNGT	4 cut(s)	325, 439, 633, 700
TaiI	ACGT	3 cut(s)	90, 346, 780
TaqI	TCGA	3 cut(s)	520, 643, 871
TasI	AATT	8 cut(s)	115, 139, 220, 580, 671, 709, 852, 874
TatI	WGTACW	1 cut(s)	287
Tru1I	TTAA	5 cut(s)	468, 495, 584, 674, 774
Tru9I	TTAA	5 cut(s)	468, 495, 584, 674, 774
TscAI	CASTG	1 cut(s)	638
TseFI	GTSAC	1 cut(s)	439
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	4 cut(s)	33, 176, 393, 426
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	1 cut(s)	638
Tth111I	GACNNNGTC	1 cut(s)	275
XapI	RAATTY	2 cut(s)	139, 580
XmnI	GAANNNNTTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.