Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004107

Physical Location & Seq

Genomic Coordinates Reverse (-)

6548127 .. 6552055

Gene Structure 3929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCCACGCCCTTTCTTCCATAAGTTGATTTTCTCATCCACTATCCAAGAAAAACGTCTGAGGGTCCCAGATAAGTTTGTGAGTAAATTCAAGGATGAGCTTTCGGTTGCTGTTGCACTCACAGTACCTGATGGTCATGTTTGGCGTGTAGGACTAAGGAAAGCTGACAACAAAATTTGGTTTCAAGATGGTTGGCAAGAGTTTGTTGACCGTTACTCCATTCGCATTGGTTATCTTTTGATTTTTAGATATGAAGGAAACTCTGCCTTCAGCGTCTACATTTTCAATTTATCCCACTCTGAGATCAATTACCATTCCACCGGTCTCATGGATTCCGCTCACAACCACTTCAAACGCGCCCGTTTGTTTGAAGACCTTGAAGATGAAGATGCCGAGGTCATCTTTCCTTCTTCTGTGTACCCATCACCACTTCCTGAGTCTACAGTACCAGCCAACAAAGGGTATGCTAGTTCAGCCATCCAAACCTTGTTCACTGGACCAGTTAAAGCTGAAGAGCCAACGCCAACCCCAAAAATACCTAAAAAGAGAGGGAGGAAGAAGAAAAATGCTGATCCTGAGGAAATAAACTCATCAGCTCCGCGAGATGATGATCCAGAGAACCGTTCAAAGTTCTACGAGAGTGCTTCTGCGAGAAAGAGAACCGTGACTGCAGAAGAAAGAGAGAGAGCCATCAATGCAGCCAAAACGTTCGAACCAACAAACCCTTTCTTCAGAGTGGTTCTGCGACCATCCTATCTATACAGAGGTTGCATCATGTATCTTCCTTCTGGGTTTGCTGAGAAGTACCTAAGTGGGATCTCCGGGTTCATCAAAGTCCAGCTTGCGGAGAAACAATGGCCTGTTCGATGTCTCTACAAAGCCGGGAGAGCCAAATTCAGTCAAGGATGGTACGAATTCACTCTAGAGAACAACTTAGGAGAAGGAGACGTCTGTGTGTTTGAGCTGCTCAGAACCAGAGATTTCGTTTTGAAAGTGACAGCCTTTCGAGTCAACGAGTACGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

341

Amino Acids

39.27

Weight (kDa)

9.17

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	5 - 96	6e-18	B3 DNA binding domain
B3	PF02362	244 - 337	1.7e-17	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49480 AT1G49480 AT1G49480 AT3G18990 AT3G18990
fragaria_vesca	FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320 FvH4_2g07320
malus_domestica	MD05G1072500.v1.1 MD10G1086900.v1.1
prunus_persica	Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1 Prupe.8G113000_v2.0.a1
pyrus_communis	pycom05g06470 pycom10g06930
rosa_chinensis	RchiOBHm_Chr6g0259941
rosa_laevigata	RLG00000014498
rosa_multiflora	Rmu_sc0000414.1_g000006
rosa_roxburghii	Rroxscaffold_7G00207280
rosa_rugosa	Rorug05G0591500
rosa_samantha	Rh6AG108500 Rh6BG103900 Rh6CG097200 Rh6DG090900
rosa_wichuraiana	Rw6G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	951
AccBSI	CCGCTC	1 cut(s)	338
AccI	GTMKAC	2 cut(s)	276, 440
AccII	CGCG	2 cut(s)	357, 601
AciI	CCGC	3 cut(s)	336, 599, 845
AclI	AACGTT	1 cut(s)	707
AclWI	GGATC	3 cut(s)	566, 605, 824
AcsI	RAATTY	4 cut(s)	86, 174, 893, 914
AcuI	CTGAAG	3 cut(s)	253, 531, 715
AcyI	GRCGYC	1 cut(s)	948
AfaI	GTAC	6 cut(s)	126, 419, 447, 806, 911, 1019
AfiI	CCNNNNNNNGG	2 cut(s)	459, 844
AgeI	ACCGGT	1 cut(s)	320
AgsI	TTSAA	8 cut(s)	91, 185, 286, 352, 371, 380, 627, 991
AluBI	AGCT	6 cut(s)	100, 164, 509, 596, 841, 964
AluI	AGCT	6 cut(s)	100, 164, 509, 596, 841, 964
Alw26I	GTCTC	3 cut(s)	329, 875, 939
AlwI	GGATC	3 cut(s)	566, 605, 824
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	857
ApeKI	GCWGC	2 cut(s)	698, 964
ApoI	RAATTY	4 cut(s)	86, 174, 893, 914
AsiGI	ACCGGT	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	64, 497
AsuC2I	CCSGG	2 cut(s)	823, 883
AsuHPI	GGTGA	1 cut(s)	417
AsuII	TTCGAA	1 cut(s)	711
AvaII	GGWCC	2 cut(s)	64, 497
AxyI	CCTNAGG	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	710, 951
BccI	CCATC	7 cut(s)	125, 182, 430, 485, 698, 757, 900
BcnI	CCSGG	2 cut(s)	823, 883
BcoDI	GTCTC	3 cut(s)	329, 875, 939
BfaI	CTAG	2 cut(s)	468, 923
BfmI	CTRYAG	2 cut(s)	441, 669
BisI	GCNGC	2 cut(s)	699, 965
BlsI	GCNGC	2 cut(s)	700, 966
Bme1390I	CCNGG	2 cut(s)	823, 883
Bme18I	GGWCC	2 cut(s)	64, 497
BmgT120I	GGNCC	2 cut(s)	64, 497
BmiI	GGNNCC	2 cut(s)	65, 66
BmrFI	CCNGG	2 cut(s)	823, 883
BmsI	GCATC	2 cut(s)	379, 780
BpiI	GAAGAC	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	711
BpuMI	CCSGG	2 cut(s)	823, 883
BsaBI	GATNNNNATC	1 cut(s)	609
BsaHI	GRCGYC	1 cut(s)	948
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	393
BsaWI	WCCGGW	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	2 cut(s)	459, 844
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	2 cut(s)	499, 500
Bse21I	CCTNAGG	1 cut(s)	576
Bse8I	GATNNNNATC	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	5 cut(s)	35, 100, 477, 749, 911
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	2 cut(s)	459, 844
BseMII	CTCAG	6 cut(s)	50, 291, 426, 567, 789, 982
BseNI	ACTGG	2 cut(s)	499, 500
BseXI	GCAGC	2 cut(s)	710, 951
Bsh1236I	CGCG	2 cut(s)	357, 601
BshFI	GGCC	1 cut(s)	859
BshTI	ACCGGT	1 cut(s)	320
BsiSI	CCGG	3 cut(s)	321, 822, 882
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	2 cut(s)	459, 844
BsmAI	GTCTC	3 cut(s)	329, 875, 939
BsmBI	CGTCTC	1 cut(s)	939
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	859
Bso31I	GGTCTC	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	711
Bsp143I	GATC	4 cut(s)	303, 571, 610, 816
BspACI	CCGC	3 cut(s)	336, 599, 845
BspANI	GGCC	1 cut(s)	859
BspCNI	CTCAG	6 cut(s)	51, 292, 427, 568, 790, 981
BspFNI	CGCG	2 cut(s)	357, 601
BspLI	GGNNCC	2 cut(s)	65, 66
BspMAI	CTGCAG	1 cut(s)	673
BspPI	GGATC	3 cut(s)	566, 605, 824
BspQI	GCTCTTC	1 cut(s)	507
BspT104I	TTCGAA	1 cut(s)	711
BspTNI	GGTCTC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	2 cut(s)	499, 500
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	4 cut(s)	303, 571, 610, 816
BssNI	GRCGYC	1 cut(s)	948
Bst4CI	ACNGT	5 cut(s)	124, 212, 445, 623, 664
Bst6I	CTCTTC	1 cut(s)	507
BstACI	GRCGYC	1 cut(s)	948
BstBI	TTCGAA	1 cut(s)	711
BstC8I	GCNNGC	1 cut(s)	843
BstDEI	CTNAG	9 cut(s)	59, 155, 300, 435, 576, 798, 809, 934, 968
BstF5I	GGATG	5 cut(s)	35, 100, 477, 749, 911
BstFNI	CGCG	2 cut(s)	357, 601
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	4 cut(s)	306, 574, 613, 819
BstMAI	GTCTC	3 cut(s)	329, 875, 939
BstMBI	GATC	4 cut(s)	303, 571, 610, 816
BstMWI	GCNNNNNNNGC	3 cut(s)	473, 695, 887
BstSCI	CCNGG	2 cut(s)	821, 881
BstSFI	CTRYAG	2 cut(s)	441, 669
BstUI	CGCG	2 cut(s)	357, 601
BstV1I	GCAGC	2 cut(s)	710, 951
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	816
BstYI	RGATCY	1 cut(s)	816
Bsu36I	CCTNAGG	1 cut(s)	576
BsuRI	GGCC	1 cut(s)	859
BtsCI	GGATG	5 cut(s)	35, 100, 477, 749, 911
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	1 cut(s)	843
CaiI	CAGNNNCTG	1 cut(s)	128
CfoI	GCGC	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	2 cut(s)	64, 497
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	6 cut(s)	125, 418, 446, 805, 910, 1018
CspAI	ACCGGT	1 cut(s)	320
CviAII	CATG	3 cut(s)	137, 328, 775
CviQI	GTAC	6 cut(s)	125, 418, 446, 805, 910, 1018
DdeI	CTNAG	9 cut(s)	59, 155, 300, 435, 576, 798, 809, 934, 968
DpnI	GATC	4 cut(s)	305, 573, 612, 818
DpnII	GATC	4 cut(s)	303, 571, 610, 816
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco31I	GGTCTC	1 cut(s)	329
Eco47I	GGWCC	2 cut(s)	64, 497
Eco57I	CTGAAG	3 cut(s)	253, 531, 715
Eco81I	CCTNAGG	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	914
Esp3I	CGTCTC	1 cut(s)	939
FaeI	CATG	3 cut(s)	140, 331, 778
FaiI	YATR	7 cut(s)	21, 138, 252, 329, 465, 760, 776
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	3 cut(s)	136, 327, 774
FblI	GTMKAC	2 cut(s)	276, 440
Fnu4HI	GCNGC	2 cut(s)	699, 965
FokI	GGATG	5 cut(s)	22, 107, 464, 736, 918
Fsp4HI	GCNGC	2 cut(s)	699, 965
FspBI	CTAG	2 cut(s)	468, 923
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	2 cut(s)	699, 965
HaeIII	GGCC	1 cut(s)	859
HapII	CCGG	3 cut(s)	321, 822, 882
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	1 cut(s)	359
Hin1I	GRCGYC	1 cut(s)	948
Hin1II	CATG	3 cut(s)	140, 331, 778
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	2 cut(s)	208, 1012
HindII	GTYRAC	2 cut(s)	208, 1012
HinfI	GANTC	3 cut(s)	332, 437, 1008
HpaII	CCGG	3 cut(s)	321, 822, 882
HphI	GGTGA	1 cut(s)	417
Hpy166II	GTNNAC	6 cut(s)	208, 277, 418, 441, 492, 1012
Hpy188I	TCNGA	5 cut(s)	60, 301, 734, 971, 1025
Hpy188III	TCNNGA	5 cut(s)	185, 434, 575, 614, 923
Hpy8I	GTNNAC	6 cut(s)	208, 277, 418, 441, 492, 1012
HpyAV	CCTTC	5 cut(s)	248, 277, 417, 795, 935
HpyCH4III	ACNGT	5 cut(s)	124, 212, 445, 623, 664
HpyCH4IV	ACGT	4 cut(s)	55, 707, 948, 1020
HpyCH4V	TGCA	4 cut(s)	116, 671, 698, 771
HpyF10VI	GCNNNNNNNGC	3 cut(s)	473, 695, 887
HpyF3I	CTNAG	9 cut(s)	59, 155, 300, 435, 576, 798, 809, 934, 968
HpySE526I	ACGT	4 cut(s)	55, 707, 948, 1020
Hsp92I	GRCGYC	1 cut(s)	948
Hsp92II	CATG	3 cut(s)	140, 331, 778
HspAI	GCGC	1 cut(s)	357
KflI	GGGWCCC	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	303, 571, 610, 816
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	2 cut(s)	710, 951
LweI	GCATC	2 cut(s)	379, 780
MaeI	CTAG	2 cut(s)	468, 923
MaeII	ACGT	4 cut(s)	55, 707, 948, 1020
MaeIII	GTNAC	3 cut(s)	212, 664, 994
MalI	GATC	4 cut(s)	305, 573, 612, 818
MbiI	CCGCTC	1 cut(s)	338
MboI	GATC	4 cut(s)	303, 571, 610, 816
MflI	RGATCY	1 cut(s)	816
MluCI	AATT	6 cut(s)	86, 174, 286, 307, 893, 914
MlyI	GAGTC	2 cut(s)	446, 1017
MnlI	CCTC	6 cut(s)	54, 388, 542, 546, 571, 758
MseI	TTAA	1 cut(s)	504
MspI	CCGG	3 cut(s)	321, 822, 882
MspR9I	CCNGG	2 cut(s)	823, 883
MvnI	CGCG	2 cut(s)	357, 601
MwoI	GCNNNNNNNGC	3 cut(s)	473, 695, 887
NciI	CCSGG	2 cut(s)	823, 883
NdeII	GATC	4 cut(s)	303, 571, 610, 816
NlaIII	CATG	3 cut(s)	140, 331, 778
NlaIV	GGNNCC	2 cut(s)	65, 66
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	2 cut(s)	664, 994
NspV	TTCGAA	1 cut(s)	711
PciSI	GCTCTTC	1 cut(s)	507
PfeI	GAWTC	1 cut(s)	332
PinAI	ACCGGT	1 cut(s)	320
PkrI	GCNGC	2 cut(s)	700, 966
PleI	GAGTC	2 cut(s)	445, 1016
PpsI	GAGTC	2 cut(s)	445, 1016
PpuMI	RGGWCCY	1 cut(s)	64
Psp1406I	AACGTT	1 cut(s)	707
Psp5II	RGGWCCY	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	65, 66
PspPI	GGNCC	2 cut(s)	64, 497
PspPPI	RGGWCCY	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	673
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	816
RsaI	GTAC	6 cut(s)	126, 419, 447, 806, 911, 1019
RsaNI	GTAC	6 cut(s)	125, 418, 446, 805, 910, 1018
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	2 cut(s)	699, 965
Sau3AI	GATC	4 cut(s)	303, 571, 610, 816
Sau96I	GGNCC	2 cut(s)	64, 497
SchI	GAGTC	2 cut(s)	446, 1017
ScrFI	CCNGG	2 cut(s)	823, 883
SfaNI	GCATC	2 cut(s)	379, 780
SfcI	CTRYAG	2 cut(s)	441, 669
SfuI	TTCGAA	1 cut(s)	711
SinI	GGWCC	2 cut(s)	64, 497
Sse9I	AATT	6 cut(s)	86, 174, 286, 307, 893, 914
SsiI	CCGC	3 cut(s)	336, 599, 845
SspMI	CTAG	2 cut(s)	468, 923
StyD4I	CCNGG	2 cut(s)	821, 881
TaaI	ACNGT	5 cut(s)	124, 212, 445, 623, 664
TaiI	ACGT	4 cut(s)	58, 710, 951, 1023
TaqI	TCGA	3 cut(s)	711, 865, 1006
TasI	AATT	6 cut(s)	86, 174, 286, 307, 893, 914
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	2 cut(s)	664, 994
TseI	GCWGC	2 cut(s)	698, 964
Tsp45I	GTSAC	2 cut(s)	664, 994
TspDTI	ATGAA	3 cut(s)	267, 399, 817
TspRI	CASTG	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	64, 497
XapI	RAATTY	4 cut(s)	86, 174, 893, 914
XbaI	TCTAGA	1 cut(s)	922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmiI	GTMKAC	2 cut(s)	276, 440
XspI	CTAG	2 cut(s)	468, 923
ZraI	GACGTC	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.