Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006565

Physical Location & Seq

Genomic Coordinates Forward (+)

18354744 .. 18356733

Gene Structure 1990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGACTGAGTATTGGGTAAGTCAAGGGAACAAATGGTGTGAATTCTGTAAGATATGGATACAGAACAATCCAACAAGTATTAGAAACCATGACCTTGGTAAGCGTCACCGAGAATGTGTTGATAAGAAGCTCACTGATATGCGTGAGAGGAGTGCAGCCAAAGACAAAGAGCTCAAGAAAAACGAAAAACTGCTTCAACAGATCGAAGCTAAAGCAACTCGTAGCTATCAGAAAGATATTGCAACTGCTCAGCAAGTAGCTAAAGCAAACGGTGCACCAGAGGATGGTACATCCGATTGGATGCTCGACAGTGCTTCAGGCTATTATTACAACCAGACCAATGGTCTGCACTATGATTCACAGTCTGGATTCTATTACAGTGACTCAATAGGACATTGGGTGACACAAGACGAGGCCTACGCTGCGGTTAAAACATCATCAGGAACCAAAGTACCTCTCGTGAAAAAGCCTGTATCTTCTTCAGGAGCTGGACCAAGTGTGGGGAAACCACCTGGCCGTCTTGTCACAGCTTCTTTAAATCCTAAAAGAGCTGTGAAAGGAGCGGCTTCATCTGTTGATCTTGGCAACAACAAGAGAAAGAGGCAAGATGAGAAACCGAAGAAAGTATCTGCAGAAGAGAAAGCTGCATTGAAGGCAAGAGAAGCTGCTAGGAAACGAGTTGAAGATAGAGAAAAACCATTGCTTGGTCTTTACAATAGACCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015030 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0019222 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071704 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U1

Protein Analysis

242

Amino Acids

27.05

Weight (kDa)

9.62

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49590 AT1G49590 AT1G49590
fragaria_vesca	FvH4_2g06680 FvH4_2g06680 FvH4_2g06680
malus_domestica	MD05G1075500.v1.1
prunus_persica	Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1
pyrus_communis	pycom05g06920
rosa_chinensis	RchiOBHm_Chr6g0258731
rosa_laevigata	RLG00000014586
rosa_multiflora	Rmu_ssc0000033.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206050
rosa_rugosa	Rorug05G0583300
rosa_samantha	Rh6AG035700 Rh6AG099700 Rh6BG091300 Rh6CG088700 Rh6DG083000
rosa_wichuraiana	Rw6G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	284, 704
AccBSI	CCGCTC	1 cut(s)	563
AciI	CCGC	2 cut(s)	425, 563
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	1 cut(s)	41
AcuI	CTGAAG	2 cut(s)	300, 465
AfaI	GTAC	2 cut(s)	289, 453
AfiI	CCNNNNNNNGG	3 cut(s)	284, 500, 704
AgsI	TTSAA	3 cut(s)	197, 652, 683
AhdI	GACNNNNNGTC	1 cut(s)	342
AjnI	CCWGG	1 cut(s)	511
Alw21I	GWGCWC	2 cut(s)	174, 277
Alw44I	GTGCAC	1 cut(s)	273
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	2 cut(s)	414, 514
ApaLI	GTGCAC	1 cut(s)	273
ApeKI	GCWGC	4 cut(s)	155, 422, 644, 665
ApoI	RAATTY	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	2 cut(s)	98, 412
AvaII	GGWCC	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	277
BaeI	ACNNNNGTAYC	2 cut(s)	435, 468
BanII	GRGCYC	1 cut(s)	174
BauI	CACGAG	1 cut(s)	458
Bbv12I	GWGCWC	2 cut(s)	174, 277
BbvI	GCAGC	4 cut(s)	167, 409, 631, 652
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	501
BciT130I	CCWGG	1 cut(s)	513
BciVI	GTATCC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	669
BfmI	CTRYAG	1 cut(s)	630
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	5 cut(s)	156, 423, 564, 645, 666
BlpI	GCTNAGC	1 cut(s)	249
BlsI	GCNGC	5 cut(s)	157, 424, 565, 646, 667
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	1 cut(s)	491
BmeRI	GACNNNNNGTC	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	1 cut(s)	445
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	291
Bpu1102I	GCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 500, 704
Bse3DI	GCAATG	1 cut(s)	698
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	3 cut(s)	289, 290, 306
BseLI	CCNNNNNNNGG	3 cut(s)	284, 500, 704
BseMI	GCAATG	1 cut(s)	698
BseMII	CTCAG	1 cut(s)	263
BseRI	GAGGAG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	4 cut(s)	167, 409, 631, 652
BsgI	GTGCAG	2 cut(s)	174, 332
BshFI	GGCC	2 cut(s)	416, 516
BsiHKAI	GWGCWC	2 cut(s)	174, 277
BslI	CCNNNNNNNGG	3 cut(s)	284, 500, 704
BsnI	GGCC	2 cut(s)	416, 516
Bsp1286I	GDGCHC	2 cut(s)	174, 277
Bsp143I	GATC	2 cut(s)	201, 577
Bsp1720I	GCTNAGC	1 cut(s)	249
BspACI	CCGC	2 cut(s)	425, 563
BspANI	GGCC	2 cut(s)	416, 516
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	445
BspMAI	CTGCAG	1 cut(s)	634
BsrBI	CCGCTC	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	698
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	2 cut(s)	201, 577
BssSI	CACGAG	1 cut(s)	458
BssT1I	CCWWGG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	4 cut(s)	272, 311, 363, 380
Bst6I	CTCTTC	1 cut(s)	630
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstDEI	CTNAG	2 cut(s)	6, 249
BstF5I	GGATG	3 cut(s)	289, 290, 306
BstKTI	GATC	2 cut(s)	204, 580
BstMBI	GATC	2 cut(s)	201, 577
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 422, 653, 662
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	630
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	4 cut(s)	167, 409, 631, 652
BstXI	CCANNNNNNTGG	2 cut(s)	95, 341
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	416, 516
BtsCI	GGATG	3 cut(s)	289, 290, 306
BtsIMutI	CAGTG	3 cut(s)	132, 316, 385
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr13I	GGNCC	1 cut(s)	491
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	288, 452
CviAII	CATG	1 cut(s)	89
CviQI	GTAC	2 cut(s)	288, 452
DdeI	CTNAG	2 cut(s)	6, 249
DpnI	GATC	2 cut(s)	203, 579
DpnII	GATC	2 cut(s)	201, 577
DraI	TTTAAA	1 cut(s)	537
DriI	GACNNNNNGTC	1 cut(s)	342
EaeI	YGGCCR	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	630
Eam1105I	GACNNNNNGTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	630
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	94
Eco147I	AGGCCT	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	491
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	2 cut(s)	300, 465
EcoICRI	GAGCTC	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	1 cut(s)	92
FaiI	YATR	4 cut(s)	55, 90, 140, 354
FatI	CATG	1 cut(s)	88
Fnu4HI	GCNGC	5 cut(s)	156, 423, 564, 645, 666
FokI	GGATG	3 cut(s)	277, 296, 313
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	5 cut(s)	156, 423, 564, 645, 666
FspBI	CTAG	1 cut(s)	669
GluI	GCNGC	5 cut(s)	156, 423, 564, 645, 666
HaeIII	GGCC	2 cut(s)	416, 516
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	92
HinfI	GANTC	3 cut(s)	356, 369, 383
HphI	GGTGA	2 cut(s)	98, 412
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	231, 295
Hpy188III	TCNNGA	5 cut(s)	175, 366, 441, 460, 483
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	1 cut(s)	646
HpyCH4III	ACNGT	4 cut(s)	272, 311, 363, 380
HpyCH4V	TGCA	6 cut(s)	155, 242, 275, 349, 632, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 422, 653, 662
HpyF3I	CTNAG	2 cut(s)	6, 249
Hsp92II	CATG	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	201, 577
LmnI	GCTCC	2 cut(s)	485, 560
Lsp1109I	GCAGC	4 cut(s)	167, 409, 631, 652
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	669
MaeIII	GTNAC	4 cut(s)	104, 380, 400, 523
MalI	GATC	2 cut(s)	203, 579
MbiI	CCGCTC	1 cut(s)	563
MboI	GATC	2 cut(s)	201, 577
MboII	GAAGA	5 cut(s)	468, 471, 631, 647, 695
MhlI	GDGCHC	2 cut(s)	174, 277
MluCI	AATT	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	5 cut(s)	141, 274, 406, 465, 594
MseI	TTAA	2 cut(s)	429, 536
MslI	CAYNNNNRTG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	4 cut(s)	272, 422, 653, 662
NdeII	GATC	2 cut(s)	201, 577
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	445
NmuCI	GTSAC	4 cut(s)	104, 380, 400, 523
PceI	AGGCCT	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	356, 369
PflMI	CCANNNNNTGG	2 cut(s)	284, 704
PkrI	GCNGC	5 cut(s)	157, 424, 565, 646, 667
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	1 cut(s)	491
PstI	CTGCAG	1 cut(s)	634
PstNI	CAGNNNCTG	1 cut(s)	488
RsaI	GTAC	2 cut(s)	289, 453
RsaNI	GTAC	2 cut(s)	288, 452
RseI	CAYNNNNRTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	429, 536
SatI	GCNGC	5 cut(s)	156, 423, 564, 645, 666
Sau3AI	GATC	2 cut(s)	201, 577
Sau96I	GGNCC	1 cut(s)	491
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	174, 277
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	630
SinI	GGWCC	1 cut(s)	491
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	41
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	2 cut(s)	425, 563
SspMI	CTAG	1 cut(s)	669
SstI	GAGCTC	1 cut(s)	174
StuI	AGGCCT	1 cut(s)	416
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	4 cut(s)	272, 311, 363, 380
TaqI	TCGA	2 cut(s)	204, 306
TasI	AATT	1 cut(s)	41
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	2 cut(s)	356, 369
Tru1I	TTAA	2 cut(s)	429, 536
Tru9I	TTAA	2 cut(s)	429, 536
TscAI	CASTG	3 cut(s)	139, 316, 385
TseFI	GTSAC	4 cut(s)	104, 380, 400, 523
TseI	GCWGC	4 cut(s)	155, 422, 644, 665
Tsp45I	GTSAC	4 cut(s)	104, 380, 400, 523
TspDTI	ATGAA	1 cut(s)	558
TspRI	CASTG	3 cut(s)	139, 316, 385
Van91I	CCANNNNNTGG	2 cut(s)	284, 704
VneI	GTGCAC	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	1 cut(s)	41
XspI	CTAG	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.