Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006565

Physical Location & Seq

Genomic Coordinates Forward (+)

4611904 .. 4613385

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG035700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGACTGAGTATTGGGTTAGCCAGGGAAACAAATGGTGTGACTTCTGCAAAATCTACATATCAAACAATCCTTCTAGCATTAGAAATCATGAGCTTGGTACGCGTCACAAGGATGCTGTTTCTAAGAAGCTTGCTGATATGCGAAAAGACAGAGCTGCTAAGGAGAAGGAAGAAAAGGAAGCAGAACGTGCCCTCTTGCAAATTGAAGCAGTGAGTATTAGAATCATTACAAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015030 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0019222 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071704 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U1

Protein Analysis

79

Amino Acids

9.22

Weight (kDa)

9.23

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-U1	PF06220	11 - 42	6.6e-08	U1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49590 AT1G49590 AT1G49590
fragaria_vesca	FvH4_2g06680 FvH4_2g06680 FvH4_2g06680
malus_domestica	MD05G1075500.v1.1
prunus_persica	Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1
pyrus_communis	pycom05g06920
rosa_chinensis	RchiOBHm_Chr6g0258731
rosa_laevigata	RLG00000014586
rosa_multiflora	Rmu_ssc0000033.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206050
rosa_rugosa	Rorug05G0583300
rosa_samantha	Rh6AG035700 Rh6AG099700 Rh6BG091300 Rh6CG088700 Rh6DG083000
rosa_wichuraiana	Rw6G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	103
AfaI	GTAC	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	3 cut(s)	94, 130, 155
AluI	AGCT	3 cut(s)	94, 130, 155
ApeKI	GCWGC	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	23
BfaI	CTAG	1 cut(s)	75
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	23
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	103
Bpu10I	CCTNAGC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	118
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	3 cut(s)	6, 123, 159
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 188
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	193
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	132
CciI	TCATGA	1 cut(s)	88
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	4 cut(s)	21, 94, 130, 155
CviKI_1	RGCY	4 cut(s)	21, 94, 130, 155
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	3 cut(s)	6, 123, 159
EcoRII	CCWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	92
FaiI	YATR	4 cut(s)	59, 90, 140, 238
FatI	CATG	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	1 cut(s)	156
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	92
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	1 cut(s)	222
Hpy188III	TCNNGA	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	81, 160
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	48, 199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 188
HpyF3I	CTNAG	3 cut(s)	6, 123, 159
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	1 cut(s)	92
LpnPI	CCDG	2 cut(s)	8, 35
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	2 cut(s)	38, 104
MboII	GAAGA	1 cut(s)	182
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	1 cut(s)	201
MluI	ACGCGT	1 cut(s)	101
MnlI	CCTC	1 cut(s)	203
MslI	CAYNNNNRTG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	100, 188
NlaIII	CATG	1 cut(s)	92
NmuCI	GTSAC	2 cut(s)	38, 104
PagI	TCATGA	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	111
SatI	GCNGC	1 cut(s)	156
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	4 cut(s)	96, 132, 157, 190
SfaNI	GCATC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	1 cut(s)	201
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	21
TaiI	ACGT	1 cut(s)	190
TasI	AATT	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	222
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	2 cut(s)	38, 104
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	2 cut(s)	38, 104
TspRI	CASTG	1 cut(s)	216
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.