Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006565

Physical Location & Seq

Genomic Coordinates Forward (+)

9782258 .. 9785403

Gene Structure 3146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g06920.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGACTGAGTATTGGGTTAGCCAGGGTAACAAGTGGTGTGACTTCTGCAAAATCTACATCTCGCACAATCCTTCCAGCGTCAGAAATCATGAACTTGGTCAACGACACAAGGATAATGTTGCAAAGAAGCTTGCTGATATGCGAAAAGAAAAAGCTGCAAAGGAGAAGGAAGAAAAGGAAGCAGAGCGCGCCCTTCTGCAAATCGAAGCAAAAGCTAAGCGCAGCTATCAAAAGGATGTGGCAAACTTAAAGGAGGCTAGAGATTCTCGTGCATTCGAAGTTGATGATGATGATCTAGAGAAATGGCAGTATAACAGCACATCTGGTTATTACTACAATCAAAGTAATGGTTTTTACTATGATCCAAATTCAGGCTTCTACTATTCTGATTCTATAGGCAAGTGGGTAACACAGGAAGAGGCATATGCGAACCCACAGTTCTTATCCAATGCTGGATATAAAGAAACCATTTTGAAAAGGCCAGTGTCAGCCTCAGGTGCAGGATCAGCTACAGAAAACAAAGGTGCTGATAAAACTCAAAATGGGCCTCCACCTGGGCCAGTAGTTTCATCCTCTATAAATCCCAAGAGATCTGTTAAAGGTGCTGCTTCCTCCGTTGCTGTTGGAAAGAGAAAGAGAGATGAGAAGCCAAGGGCTGTATCCGCCGAAGAAGCAGCTGCACTTAAAGCAAGGGAAGCTGCAAGAAAGAGAGTTCAAGAGAGAGAGAAACCATTGCTTGGCCTTTACCGGCCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015030 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0019222 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071704 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U1

Protein Analysis

253

Amino Acids

28.37

Weight (kDa)

9.34

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49590 AT1G49590 AT1G49590
fragaria_vesca	FvH4_2g06680 FvH4_2g06680 FvH4_2g06680
malus_domestica	MD05G1075500.v1.1
prunus_persica	Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1
pyrus_communis	pycom05g06920
rosa_chinensis	RchiOBHm_Chr6g0258731
rosa_laevigata	RLG00000014586
rosa_multiflora	Rmu_ssc0000033.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206050
rosa_rugosa	Rorug05G0583300
rosa_samantha	Rh6AG035700 Rh6AG099700 Rh6BG091300 Rh6CG088700 Rh6DG083000
rosa_wichuraiana	Rw6G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	737
AccII	CGCG	1 cut(s)	189
AciI	CCGC	1 cut(s)	663
AclWI	GGATC	2 cut(s)	356, 511
AcoI	YGGCCR	1 cut(s)	749
AcsI	RAATTY	1 cut(s)	367
AfiI	CCNNNNNNNGG	3 cut(s)	371, 554, 737
AgsI	TTSAA	2 cut(s)	475, 716
AjnI	CCWGG	2 cut(s)	21, 553
AluBI	AGCT	7 cut(s)	130, 155, 215, 225, 509, 677, 698
AluI	AGCT	7 cut(s)	130, 155, 215, 225, 509, 677, 698
AlwI	GGATC	2 cut(s)	356, 511
AoxI	GGCC	5 cut(s)	479, 545, 557, 739, 749
ApeKI	GCWGC	6 cut(s)	155, 222, 605, 674, 677, 698
ApoI	RAATTY	1 cut(s)	367
AspLEI	GCGC	3 cut(s)	189, 191, 222
AspS9I	GGNCC	2 cut(s)	545, 557
AsuII	TTCGAA	1 cut(s)	276
AxyI	CCTNAGG	1 cut(s)	493
BauI	CACGAG	1 cut(s)	267
BbvI	GCAGC	6 cut(s)	142, 234, 592, 664, 685, 686
BciT130I	CCWGG	2 cut(s)	23, 555
BciVI	GTATCC	1 cut(s)	670
BfaI	CTAG	2 cut(s)	258, 296
BfmI	CTRYAG	2 cut(s)	393, 510
BfuI	GTATCC	1 cut(s)	670
BglII	AGATCT	1 cut(s)	590
BisI	GCNGC	6 cut(s)	156, 223, 606, 675, 678, 699
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	6 cut(s)	157, 224, 607, 676, 679, 700
Bme1390I	CCNGG	2 cut(s)	23, 555
BmgT120I	GGNCC	2 cut(s)	545, 557
BmrFI	CCNGG	2 cut(s)	23, 555
Bpu1102I	GCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	22, 554, 650
Bsc4I	CCNNNNNNNGG	3 cut(s)	371, 554, 737
Bse118I	RCCGGY	1 cut(s)	747
Bse1I	ACTGG	2 cut(s)	482, 560
Bse21I	CCTNAGG	1 cut(s)	493
Bse3DI	GCAATG	1 cut(s)	731
Bse8I	GATNNNNATC	1 cut(s)	291
BseBI	CCWGG	2 cut(s)	23, 555
BseDI	CCNNGG	3 cut(s)	22, 554, 650
BseGI	GGATG	2 cut(s)	241, 569
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	3 cut(s)	371, 554, 737
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	482, 560
BsePI	GCGCGC	1 cut(s)	187
BseXI	GCAGC	6 cut(s)	142, 234, 592, 664, 685, 686
BsgI	GTGCAG	2 cut(s)	519, 663
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	5 cut(s)	481, 547, 559, 741, 751
BsiSI	CCGG	1 cut(s)	748
BslI	CCNNNNNNNGG	3 cut(s)	371, 554, 737
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	5 cut(s)	481, 547, 559, 741, 751
Bsp119I	TTCGAA	1 cut(s)	276
Bsp143I	GATC	4 cut(s)	292, 361, 503, 590
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	1 cut(s)	663
BspANI	GGCC	5 cut(s)	481, 547, 559, 741, 751
BspCNI	CTCAG	1 cut(s)	506
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	88
BspPI	GGATC	2 cut(s)	356, 511
BspT104I	TTCGAA	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	731
BsrFI	RCCGGY	1 cut(s)	747
BsrI	ACTGG	2 cut(s)	482, 560
BssAI	RCCGGY	1 cut(s)	747
BssECI	CCNNGG	3 cut(s)	22, 554, 650
BssHII	GCGCGC	1 cut(s)	187
BssMI	GATC	4 cut(s)	292, 361, 503, 590
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	650
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	23, 555
Bst4CI	ACNGT	1 cut(s)	438
Bst6I	CTCTTC	1 cut(s)	411
BstBI	TTCGAA	1 cut(s)	276
BstC8I	GCNNGC	2 cut(s)	132, 189
BstDEI	CTNAG	3 cut(s)	6, 216, 493
BstF5I	GGATG	2 cut(s)	241, 569
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	189, 191, 222
BstKTI	GATC	4 cut(s)	295, 364, 506, 593
BstMBI	GATC	4 cut(s)	292, 361, 503, 590
BstMWI	GCNNNNNNNGC	7 cut(s)	188, 497, 506, 662, 671, 686, 695
BstNI	CCWGG	2 cut(s)	23, 555
BstSCI	CCNGG	2 cut(s)	21, 553
BstSFI	CTRYAG	2 cut(s)	393, 510
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	6 cut(s)	142, 234, 592, 664, 685, 686
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
Bsu36I	CCTNAGG	1 cut(s)	493
BsuI	GTATCC	1 cut(s)	670
BsuRI	GGCC	5 cut(s)	481, 547, 559, 741, 751
BtsCI	GGATG	2 cut(s)	241, 569
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	2 cut(s)	132, 189
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	3 cut(s)	189, 191, 222
Cfr10I	RCCGGY	1 cut(s)	747
Cfr13I	GGNCC	2 cut(s)	545, 557
CseI	GACGC	1 cut(s)	67
CviAII	CATG	1 cut(s)	89
DdeI	CTNAG	3 cut(s)	6, 216, 493
DpnI	GATC	4 cut(s)	294, 363, 505, 592
DpnII	GATC	4 cut(s)	292, 361, 503, 590
EaeI	YGGCCR	1 cut(s)	749
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	652
Eco130I	CCWWGG	1 cut(s)	650
Eco81I	CCTNAGG	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	21, 553
EcoT14I	CCWWGG	1 cut(s)	650
ErhI	CCWWGG	1 cut(s)	650
FaeI	CATG	1 cut(s)	92
FaiI	YATR	9 cut(s)	90, 140, 312, 360, 395, 424, 426, 459, 578
FatI	CATG	1 cut(s)	88
FauNDI	CATATG	1 cut(s)	424
Fnu4HI	GCNGC	6 cut(s)	156, 223, 606, 675, 678, 699
FokI	GGATG	2 cut(s)	248, 556
Fsp4HI	GCNGC	6 cut(s)	156, 223, 606, 675, 678, 699
FspBI	CTAG	2 cut(s)	258, 296
GlaI	GCGC	3 cut(s)	188, 190, 221
GluI	GCNGC	6 cut(s)	156, 223, 606, 675, 678, 699
HaeIII	GGCC	5 cut(s)	481, 547, 559, 741, 751
HapII	CCGG	1 cut(s)	748
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	3 cut(s)	189, 191, 222
Hin1II	CATG	1 cut(s)	92
Hin6I	GCGC	3 cut(s)	187, 189, 220
HinP1I	GCGC	3 cut(s)	187, 189, 220
HincII	GTYRAC	1 cut(s)	101
HindII	GTYRAC	1 cut(s)	101
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	2 cut(s)	263, 389
HpaII	CCGG	1 cut(s)	748
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	83, 388
Hpy188III	TCNNGA	3 cut(s)	89, 296, 716
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	81, 160, 203
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4V	TGCA	8 cut(s)	48, 122, 158, 199, 272, 500, 680, 701
HpyF10VI	GCNNNNNNNGC	7 cut(s)	188, 497, 506, 662, 671, 686, 695
HpyF3I	CTNAG	3 cut(s)	6, 216, 493
Hsp92II	CATG	1 cut(s)	92
HspAI	GCGC	3 cut(s)	187, 189, 220
Kzo9I	GATC	4 cut(s)	292, 361, 503, 590
Lsp1109I	GCAGC	6 cut(s)	142, 234, 592, 664, 685, 686
MaeI	CTAG	2 cut(s)	258, 296
MaeIII	GTNAC	3 cut(s)	26, 38, 406
MalI	GATC	4 cut(s)	294, 363, 505, 592
MboI	GATC	4 cut(s)	292, 361, 503, 590
MboII	GAAGA	3 cut(s)	182, 428, 680
MflI	RGATCY	1 cut(s)	590
MluCI	AATT	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	604
MnlI	CCTC	6 cut(s)	247, 412, 502, 558, 583, 622
MseI	TTAA	3 cut(s)	248, 597, 684
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	1 cut(s)	748
MspR9I	CCNGG	2 cut(s)	23, 555
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	2 cut(s)	23, 555
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	7 cut(s)	188, 497, 506, 662, 671, 686, 695
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	4 cut(s)	292, 361, 503, 590
NlaIII	CATG	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	38
NspV	TTCGAA	1 cut(s)	276
PagI	TCATGA	1 cut(s)	88
PauI	GCGCGC	1 cut(s)	187
PctI	GAATGC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	263, 389
PflMI	CCANNNNNTGG	1 cut(s)	737
PkrI	GCNGC	6 cut(s)	157, 224, 607, 676, 679, 700
Psp6I	CCWGG	2 cut(s)	21, 553
PspGI	CCWGG	2 cut(s)	21, 553
PspPI	GGNCC	2 cut(s)	545, 557
PsuI	RGATCY	1 cut(s)	590
PteI	GCGCGC	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	677
SaqAI	TTAA	3 cut(s)	248, 597, 684
SatI	GCNGC	6 cut(s)	156, 223, 606, 675, 678, 699
Sau3AI	GATC	4 cut(s)	292, 361, 503, 590
Sau96I	GGNCC	2 cut(s)	545, 557
ScrFI	CCNGG	2 cut(s)	23, 555
SfcI	CTRYAG	2 cut(s)	393, 510
SfuI	TTCGAA	1 cut(s)	276
Sse9I	AATT	1 cut(s)	367
SsiI	CCGC	1 cut(s)	663
SspMI	CTAG	2 cut(s)	258, 296
StyD4I	CCNGG	2 cut(s)	21, 553
StyI	CCWWGG	1 cut(s)	650
TaaI	ACNGT	1 cut(s)	438
TaqI	TCGA	2 cut(s)	204, 276
TasI	AATT	1 cut(s)	367
TfiI	GAWTC	2 cut(s)	263, 389
Tru1I	TTAA	3 cut(s)	248, 597, 684
Tru9I	TTAA	3 cut(s)	248, 597, 684
TscAI	CASTG	1 cut(s)	489
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	6 cut(s)	155, 222, 605, 674, 677, 698
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	2 cut(s)	105, 558
TspGWI	ACGGA	1 cut(s)	604
TspRI	CASTG	1 cut(s)	489
Van91I	CCANNNNNTGG	1 cut(s)	737
XapI	RAATTY	1 cut(s)	367
XbaI	TCTAGA	1 cut(s)	295
XspI	CTAG	2 cut(s)	258, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.