Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006565

Physical Location & Seq

Genomic Coordinates Reverse (-)

14648484 .. 14653946

Gene Structure 5463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G008650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGACTGAGTATTGGGTTAGCCAGGGAAACAAATGGTGTGACTTCTGCAAAATCTACATATCAAACAATCCTTCTAGCATTAGAAATCATGAGCTTGGTACGCGTCACAAGGATGCTGTTGCTAAGAAGCTTGCTGATATGCGAAAAGACAGAGCTGCTAAAGAGAAGGAAGAAAAGGAAGCAGAGCGTGCCCTCTTGCAAATTGAAGCAAAAGCTAAGCGCAGCTATCAAAAGGATATGACGAACTTTCAGGAGGCTAGAGATACTCATGCTCTTGCACTAGATGTTGGGGATGATGGTGAAGAGAAATGGCAGTATGACAGCACTTCTGGTTATTACTACCATCAAAATAATGGCTTTTGCTATGATGCGAACTCCGGTTTCTACTATTCTGATTCTATAGGCAAATGGGTGACACAGGAAGAGGCATATGCAACCCCTCAGTTTTTGTCAAATTCTGGGCATAAATCAACGATGTTGAGGAAGCAAACAACAACTTCACAGACTGGATCAGCTTCAGAAAATAAAGGTGCTGATAAAGCCAAAAATGGGCCTCCACCTGGGCCAGTGATTCCAACTTTAAATCCTATGAGATCTGTTAAAGGTGCTCCCTCTAAAGTTGTCGTTGGCAAAAGAAAGAGGCAAGAGCAGAAGCCAAGGGTTATGACTGCAGAAGAAGCAGCTGCACTTAAAACAAGGGAGGCCGCCAGGAAGAGAGTTCAAGACAGAGAGAAACCATTGCTTGGCCTTTACAGGCCACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015030 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0019222 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071704 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U1

Protein Analysis

254

Amino Acids

28.76

Weight (kDa)

9.4

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-U1	PF06220	11 - 42	4.7e-07	U1 zinc finger
OCRE	PF17780	102 - 150	5.8e-16	OCRE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49590 AT1G49590 AT1G49590
fragaria_vesca	FvH4_2g06680 FvH4_2g06680 FvH4_2g06680
malus_domestica	MD05G1075500.v1.1
prunus_persica	Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1
pyrus_communis	pycom05g06920
rosa_chinensis	RchiOBHm_Chr6g0258731
rosa_laevigata	RLG00000014586
rosa_multiflora	Rmu_ssc0000033.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206050
rosa_rugosa	Rorug05G0583300
rosa_samantha	Rh6AG035700 Rh6AG099700 Rh6BG091300 Rh6CG088700 Rh6DG083000
rosa_wichuraiana	Rw6G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	743
AccII	CGCG	1 cut(s)	103
AciI	CCGC	1 cut(s)	705
AclWI	GGATC	1 cut(s)	517
AcsI	RAATTY	1 cut(s)	454
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	3 cut(s)	549, 560, 743
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	206, 722
AjnI	CCWGG	3 cut(s)	21, 559, 707
AluBI	AGCT	7 cut(s)	94, 130, 155, 215, 225, 515, 683
AluI	AGCT	7 cut(s)	94, 130, 155, 215, 225, 515, 683
Alw21I	GWGCWC	1 cut(s)	610
AlwI	GGATC	1 cut(s)	517
AoxI	GGCC	5 cut(s)	551, 563, 702, 745, 755
ApeKI	GCWGC	4 cut(s)	155, 222, 680, 683
ApoI	RAATTY	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	551, 563
AsuHPI	GGTGA	2 cut(s)	311, 424
BaeGI	GKGCMC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	4 cut(s)	142, 234, 670, 692
BccI	CCATC	2 cut(s)	290, 351
BciT130I	CCWGG	3 cut(s)	23, 561, 709
BfaI	CTAG	3 cut(s)	75, 258, 281
BfmI	CTRYAG	2 cut(s)	399, 669
BglII	AGATCT	1 cut(s)	593
BisI	GCNGC	5 cut(s)	156, 223, 681, 684, 705
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	5 cut(s)	157, 224, 682, 685, 706
Bme1390I	CCNGG	3 cut(s)	23, 561, 709
BmgT120I	GGNCC	2 cut(s)	551, 563
BmrFI	CCNGG	3 cut(s)	23, 561, 709
BmsI	GCATC	2 cut(s)	103, 358
Bpu1102I	GCTNAGC	1 cut(s)	216
BsaJI	CCNNGG	3 cut(s)	22, 560, 656
BsaWI	WCCGGW	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	3 cut(s)	549, 560, 743
Bse1I	ACTGG	2 cut(s)	511, 566
Bse3DI	GCAATG	1 cut(s)	737
BseBI	CCWGG	3 cut(s)	23, 561, 709
BseDI	CCNNGG	3 cut(s)	22, 560, 656
BseGI	GGATG	2 cut(s)	118, 298
BseLI	CCNNNNNNNGG	3 cut(s)	549, 560, 743
BseMI	GCAATG	1 cut(s)	737
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	2 cut(s)	511, 566
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	4 cut(s)	142, 234, 670, 692
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	5 cut(s)	553, 565, 704, 747, 757
BsiHKAI	GWGCWC	1 cut(s)	610
BsiSI	CCGG	1 cut(s)	378
BslI	CCNNNNNNNGG	3 cut(s)	549, 560, 743
BsnI	GGCC	5 cut(s)	553, 565, 704, 747, 757
Bsp1286I	GDGCHC	2 cut(s)	193, 610
Bsp143I	GATC	2 cut(s)	509, 593
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	1 cut(s)	705
BspANI	GGCC	5 cut(s)	553, 565, 704, 747, 757
BspCNI	CTCAG	1 cut(s)	454
BspFNI	CGCG	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	673
BspPI	GGATC	1 cut(s)	517
BsrDI	GCAATG	1 cut(s)	737
BsrI	ACTGG	2 cut(s)	511, 566
BssECI	CCNNGG	3 cut(s)	22, 560, 656
BssMI	GATC	2 cut(s)	509, 593
BssT1I	CCWWGG	1 cut(s)	656
Bst2UI	CCWGG	3 cut(s)	23, 561, 709
Bst6I	CTCTTC	3 cut(s)	297, 417, 707
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	132, 189
BstDEI	CTNAG	4 cut(s)	6, 123, 216, 441
BstF5I	GGATG	2 cut(s)	118, 298
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	2 cut(s)	512, 596
BstMBI	GATC	2 cut(s)	509, 593
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 188, 539, 677
BstNI	CCWGG	3 cut(s)	23, 561, 709
BstSCI	CCNGG	3 cut(s)	21, 559, 707
BstSFI	CTRYAG	2 cut(s)	399, 669
BstSLI	GKGCMC	1 cut(s)	193
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	4 cut(s)	142, 234, 670, 692
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	5 cut(s)	553, 565, 704, 747, 757
BtsCI	GGATG	2 cut(s)	118, 298
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	2 cut(s)	132, 189
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	551, 563
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	2 cut(s)	89, 269
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	4 cut(s)	6, 123, 216, 441
DpnI	GATC	2 cut(s)	511, 595
DpnII	GATC	2 cut(s)	509, 593
DraI	TTTAAA	1 cut(s)	582
Eam1104I	CTCTTC	3 cut(s)	297, 417, 707
EarI	CTCTTC	3 cut(s)	297, 417, 707
Eco130I	CCWWGG	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	501
EcoRII	CCWGG	3 cut(s)	21, 559, 707
EcoT14I	CCWWGG	1 cut(s)	656
ErhI	CCWWGG	1 cut(s)	656
FaeI	CATG	2 cut(s)	92, 272
FatI	CATG	2 cut(s)	88, 268
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	5 cut(s)	156, 223, 681, 684, 705
FokI	GGATG	2 cut(s)	125, 305
Fsp4HI	GCNGC	5 cut(s)	156, 223, 681, 684, 705
FspBI	CTAG	3 cut(s)	75, 258, 281
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	5 cut(s)	156, 223, 681, 684, 705
HaeIII	GGCC	5 cut(s)	553, 565, 704, 747, 757
HapII	CCGG	1 cut(s)	378
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	92, 272
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	2 cut(s)	395, 571
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	2 cut(s)	311, 424
Hpy188I	TCNGA	2 cut(s)	394, 520
Hpy188III	TCNNGA	3 cut(s)	89, 251, 722
HpyAV	CCTTC	2 cut(s)	81, 160
HpyCH4V	TGCA	6 cut(s)	48, 199, 278, 434, 671, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 188, 539, 677
HpyF3I	CTNAG	4 cut(s)	6, 123, 216, 441
Hsp92II	CATG	2 cut(s)	92, 272
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	509, 593
LmnI	GCTCC	1 cut(s)	613
Lsp1109I	GCAGC	4 cut(s)	142, 234, 670, 692
LweI	GCATC	2 cut(s)	103, 358
MaeI	CTAG	3 cut(s)	75, 258, 281
MaeIII	GTNAC	3 cut(s)	38, 104, 412
MalI	GATC	2 cut(s)	511, 595
MboI	GATC	2 cut(s)	509, 593
MboII	GAAGA	5 cut(s)	182, 314, 434, 686, 724
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	2 cut(s)	193, 610
MluCI	AATT	2 cut(s)	201, 454
MluI	ACGCGT	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	599
MnlI	CCTC	9 cut(s)	203, 247, 418, 450, 474, 564, 622, 633, 694
MseI	TTAA	3 cut(s)	581, 600, 690
MslI	CAYNNNNRTG	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	3 cut(s)	23, 561, 709
MvaI	CCWGG	3 cut(s)	23, 561, 709
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	4 cut(s)	100, 188, 539, 677
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	2 cut(s)	509, 593
NlaIII	CATG	2 cut(s)	92, 272
NmuCI	GTSAC	3 cut(s)	38, 104, 412
PagI	TCATGA	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	395, 571
PflMI	CCANNNNNTGG	1 cut(s)	743
PkrI	GCNGC	5 cut(s)	157, 224, 682, 685, 706
Psp6I	CCWGG	3 cut(s)	21, 559, 707
PspGI	CCWGG	3 cut(s)	21, 559, 707
PspPI	GGNCC	2 cut(s)	551, 563
PstI	CTGCAG	1 cut(s)	673
PsuI	RGATCY	1 cut(s)	593
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	581, 600, 690
SatI	GCNGC	5 cut(s)	156, 223, 681, 684, 705
Sau3AI	GATC	2 cut(s)	509, 593
Sau96I	GGNCC	2 cut(s)	551, 563
ScrFI	CCNGG	3 cut(s)	23, 561, 709
SduI	GDGCHC	2 cut(s)	193, 610
SfaNI	GCATC	2 cut(s)	103, 358
SfcI	CTRYAG	2 cut(s)	399, 669
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	2 cut(s)	201, 454
SsiI	CCGC	1 cut(s)	705
SspMI	CTAG	3 cut(s)	75, 258, 281
StyD4I	CCNGG	3 cut(s)	21, 559, 707
StyI	CCWWGG	1 cut(s)	656
TasI	AATT	2 cut(s)	201, 454
TauI	GCSGC	1 cut(s)	707
TfiI	GAWTC	2 cut(s)	395, 571
Tru1I	TTAA	3 cut(s)	581, 600, 690
Tru9I	TTAA	3 cut(s)	581, 600, 690
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	3 cut(s)	38, 104, 412
TseI	GCWGC	4 cut(s)	155, 222, 680, 683
Tsp45I	GTSAC	3 cut(s)	38, 104, 412
TspRI	CASTG	1 cut(s)	573
Van91I	CCANNNNNTGG	1 cut(s)	743
XapI	RAATTY	1 cut(s)	454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
XspI	CTAG	3 cut(s)	75, 258, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.