Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000033.1

Orthogroup ID

OG0006565

Physical Location & Seq

Genomic Coordinates Forward (+)

13010 .. 16887

Gene Structure 3878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000033.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgactgagtattgggttagccagggaaacaaatggtgtgacttctgcaaaatctacatatcaaacaatccttctagcattagaaatcatgagcttggtacgcgtcacaaggatgctgttgctaagaagcttgctgatatgcgaaaagacagagctgctaaggagaaggaagaaaaggaagcagaacgtgccctcttgcaaattgaagcaaaagctaagcgcagctatcaaaaggatatgacgaactttcaggaggctagagatactcatgctcttgcactagatgttggggatgatggtgaagagacatcgatgggaggagatggtggctgtccaacatcgtttagagtttataatcaatttgccttcttcacgggatcaagtggaggagaagaagaggttaatttccaggttttcaagaactttaaaccttggaagaaacatactggaggcagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015030 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0019222 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071704 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U1

Protein Analysis

152

Amino Acids

17.24

Weight (kDa)

6.91

Isoelectric Point (pI)

28.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49590 AT1G49590 AT1G49590
fragaria_vesca	FvH4_2g06680 FvH4_2g06680 FvH4_2g06680
malus_domestica	MD05G1075500.v1.1
prunus_persica	Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1
pyrus_communis	pycom05g06920
rosa_chinensis	RchiOBHm_Chr6g0258731
rosa_laevigata	RLG00000014586
rosa_multiflora	Rmu_ssc0000033.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206050
rosa_rugosa	Rorug05G0583300
rosa_samantha	Rh6AG035700 Rh6AG099700 Rh6BG091300 Rh6CG088700 Rh6DG083000
rosa_wichuraiana	Rw6G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
AccII	CGCG	1 cut(s)	103
AclWI	GGATC	1 cut(s)	385
AfaI	GTAC	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	206, 418
AjnI	CCWGG	2 cut(s)	21, 408
AluBI	AGCT	6 cut(s)	94, 130, 155, 215, 225, 456
AluI	AGCT	6 cut(s)	94, 130, 155, 215, 225, 456
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	385
ApeKI	GCWGC	3 cut(s)	155, 222, 453
AspLEI	GCGC	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	142, 234
BccI	CCATC	3 cut(s)	290, 307, 317
BciT130I	CCWGG	2 cut(s)	23, 410
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	3 cut(s)	75, 258, 281
BisI	GCNGC	3 cut(s)	156, 223, 454
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	3 cut(s)	157, 224, 455
Bme1390I	CCNGG	2 cut(s)	23, 410
BmrFI	CCNGG	2 cut(s)	23, 410
BmsI	GCATC	1 cut(s)	103
Bpu10I	CCTNAGC	1 cut(s)	159
Bpu1102I	GCTNAGC	1 cut(s)	216
Bsa29I	ATCGAT	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	22, 431
Bse1I	ACTGG	1 cut(s)	451
BseBI	CCWGG	2 cut(s)	23, 410
BseCI	ATCGAT	1 cut(s)	311
BseDI	CCNNGG	2 cut(s)	22, 431
BseGI	GGATG	2 cut(s)	118, 298
BseNI	ACTGG	1 cut(s)	451
BseRI	GAGGAG	2 cut(s)	333, 402
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	142, 234
Bsh1236I	CGCG	1 cut(s)	103
BshVI	ATCGAT	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	377
Bsp1720I	GCTNAGC	1 cut(s)	216
BspDI	ATCGAT	1 cut(s)	311
BspFNI	CGCG	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	88
BspPI	GGATC	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	451
BssECI	CCNNGG	2 cut(s)	22, 431
BssMI	GATC	1 cut(s)	377
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	2 cut(s)	23, 410
Bst6I	CTCTTC	2 cut(s)	297, 390
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	4 cut(s)	6, 123, 159, 216
BstF5I	GGATG	2 cut(s)	118, 298
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	1 cut(s)	380
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	377
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 188
BstNI	CCWGG	2 cut(s)	23, 410
BstSCI	CCNGG	2 cut(s)	21, 408
BstSLI	GKGCMC	1 cut(s)	193
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	2 cut(s)	142, 234
Bsu15I	ATCGAT	1 cut(s)	311
BsuTUI	ATCGAT	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	118, 298
Cac8I	GCNNGC	1 cut(s)	132
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	222
ClaI	ATCGAT	1 cut(s)	311
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	2 cut(s)	89, 269
CviJI	RGCY	9 cut(s)	21, 94, 130, 155, 215, 225, 257, 330, 456
CviKI_1	RGCY	9 cut(s)	21, 94, 130, 155, 215, 225, 257, 330, 456
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	4 cut(s)	6, 123, 159, 216
DpnI	GATC	1 cut(s)	379
DpnII	GATC	1 cut(s)	377
DraI	TTTAAA	1 cut(s)	427
Eam1104I	CTCTTC	2 cut(s)	297, 390
EarI	CTCTTC	2 cut(s)	297, 390
Eco130I	CCWWGG	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	21, 408
EcoT14I	CCWWGG	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	2 cut(s)	92, 272
FaiI	YATR	7 cut(s)	59, 90, 140, 239, 270, 354, 444
FatI	CATG	2 cut(s)	88, 268
Fnu4HI	GCNGC	3 cut(s)	156, 223, 454
FokI	GGATG	2 cut(s)	125, 305
Fsp4HI	GCNGC	3 cut(s)	156, 223, 454
FspBI	CTAG	3 cut(s)	75, 258, 281
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	3 cut(s)	156, 223, 454
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	92, 272
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	128
HphI	GGTGA	1 cut(s)	311
Hpy188III	TCNNGA	3 cut(s)	89, 251, 418
HpyAV	CCTTC	3 cut(s)	81, 160, 376
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	48, 199, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 188
HpyF3I	CTNAG	4 cut(s)	6, 123, 159, 216
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	92, 272
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	377
LpnPI	CCDG	6 cut(s)	8, 35, 236, 395, 422, 432
Lsp1109I	GCAGC	2 cut(s)	142, 234
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	3 cut(s)	75, 258, 281
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	2 cut(s)	38, 104
MalI	GATC	1 cut(s)	379
MboI	GATC	1 cut(s)	377
MboII	GAAGA	6 cut(s)	182, 314, 361, 404, 407, 448
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	3 cut(s)	201, 359, 403
MluI	ACGCGT	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	6 cut(s)	203, 247, 311, 380, 391, 443
MseI	TTAA	2 cut(s)	402, 426
MslI	CAYNNNNRTG	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	456
MspR9I	CCNGG	2 cut(s)	23, 410
MvaI	CCWGG	2 cut(s)	23, 410
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	100, 188
NdeII	GATC	1 cut(s)	377
NlaIII	CATG	2 cut(s)	92, 272
NmuCI	GTSAC	2 cut(s)	38, 104
PagI	TCATGA	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	157, 224, 455
PsiI	TTATAA	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	21, 408
PspGI	CCWGG	2 cut(s)	21, 408
PvuII	CAGCTG	1 cut(s)	456
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	402, 426
SatI	GCNGC	3 cut(s)	156, 223, 454
Sau3AI	GATC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	23, 410
SduI	GDGCHC	1 cut(s)	193
SfaNI	GCATC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	3 cut(s)	201, 359, 403
SspMI	CTAG	3 cut(s)	75, 258, 281
StyD4I	CCNGG	2 cut(s)	21, 408
StyI	CCWWGG	1 cut(s)	431
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	311
TasI	AATT	3 cut(s)	201, 359, 403
Tru1I	TTAA	2 cut(s)	402, 426
Tru9I	TTAA	2 cut(s)	402, 426
TseFI	GTSAC	2 cut(s)	38, 104
TseI	GCWGC	3 cut(s)	155, 222, 453
Tsp45I	GTSAC	2 cut(s)	38, 104
XspI	CTAG	3 cut(s)	75, 258, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.