Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006565

Physical Location & Seq

Genomic Coordinates Forward (+)

14620469 .. 14626247

Gene Structure 5779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G119200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGACTGAGTATTGGGTTAGCCAGGGCAACAAATGGTGTGACTTCTGCAAAATCTACATATCAAACAACCCTTCTAGCATTAGAAATCATGAGCTTGGTCAACGTCACAAGGATAATGTTGCTAAGAAGCTTGCTGATATGCGAAAAGAGAAAGTTGCAAAAGAGAAGGAAGAAAAAGAAGCAGAACGTGCCCTTCTGCAAATTGAAGCAAAAGCTAAGCGCAGCTATCAAAAGGATGTGGCAAGCTTTCAGGAGGCTAGAGATGCCCGGGCATTCGATGTTGAAGATGATGGTCAAGAGAAATGGCAGTATAACAGTACGTCTGGTTATTACTACAATCAAAGTAATGGCTTTTACTATGATGCGAATTCAGGCTTCTACTATTCTGACGCTATAGGAAAGTGGGTGGCACAGGAAGAGGCATATGCGAACCCGCAGTTTTTATCAAATGCTGGATATAAAGAAACCATTTTGAAAAATCCAGGGTCAACTTCAGGGGCAGGACCAGCTACAGAAAACAAAAGGGCTGATAAATCTCAAAATGGGCCTCCACCTGGGCCAGTGGTCTCAGCTTCTTTAAACCCTATGAGATCTGTTAAAGGTGCTCGTTCGTCGGTTTCTGTTGGAAAGAGAAAGAGGCAAGAGGAGAAGCCAAGGGCTATATCCGCACAAGAAGCAGCTGCACTTAAAGCGAGGGAGGCTGCAAGGAAGAGAGTTGAAGAGAGAGAGAAACCATTACTTGGTCTTTACCGGCCGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015030 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0019222 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071704 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U1

Protein Analysis

254

Amino Acids

28.55

Weight (kDa)

9.37

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49590 AT1G49590 AT1G49590
fragaria_vesca	FvH4_2g06680 FvH4_2g06680 FvH4_2g06680
malus_domestica	MD05G1075500.v1.1
prunus_persica	Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1
pyrus_communis	pycom05g06920
rosa_chinensis	RchiOBHm_Chr6g0258731
rosa_laevigata	RLG00000014586
rosa_multiflora	Rmu_ssc0000033.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206050
rosa_rugosa	Rorug05G0583300
rosa_samantha	Rh6AG035700 Rh6AG099700 Rh6BG091300 Rh6CG088700 Rh6DG083000
rosa_wichuraiana	Rw6G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	740
AciI	CCGC	3 cut(s)	434, 666, 755
AcoI	YGGCCR	1 cut(s)	752
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	554, 740
AgsI	TTSAA	4 cut(s)	206, 284, 475, 719
AjnI	CCWGG	3 cut(s)	21, 481, 553
AluBI	AGCT	8 cut(s)	94, 130, 215, 225, 246, 509, 572, 680
AluI	AGCT	8 cut(s)	94, 130, 215, 225, 246, 509, 572, 680
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	1 cut(s)	571
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	3 cut(s)	545, 557, 752
ApeKI	GCWGC	4 cut(s)	222, 677, 680, 701
ApoI	RAATTY	1 cut(s)	367
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	3 cut(s)	503, 545, 557
AsuC2I	CCSGG	2 cut(s)	268, 269
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	4 cut(s)	234, 667, 688, 689
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	3 cut(s)	23, 483, 555
BcnI	CCSGG	2 cut(s)	268, 269
BcoDI	GTCTC	1 cut(s)	571
BfaI	CTAG	2 cut(s)	75, 258
BfmI	CTRYAG	2 cut(s)	393, 510
BglII	AGATCT	1 cut(s)	590
BisI	GCNGC	5 cut(s)	223, 678, 681, 702, 755
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	5 cut(s)	224, 679, 682, 703, 756
Bme1390I	CCNGG	5 cut(s)	23, 268, 269, 483, 555
Bme18I	GGWCC	1 cut(s)	503
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	3 cut(s)	503, 545, 557
BmrFI	CCNGG	5 cut(s)	23, 268, 269, 483, 555
BmsI	GCATC	2 cut(s)	253, 352
Bpu1102I	GCTNAGC	1 cut(s)	216
BpuMI	CCSGG	2 cut(s)	268, 269
BsaI	GGTCTC	1 cut(s)	571
BsaJI	CCNNGG	5 cut(s)	22, 267, 482, 554, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	554, 740
Bse118I	RCCGGY	1 cut(s)	750
Bse1I	ACTGG	1 cut(s)	560
BseBI	CCWGG	3 cut(s)	23, 483, 555
BseDI	CCNNGG	5 cut(s)	22, 267, 482, 554, 653
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	554, 740
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	560
BseRI	GAGGAG	1 cut(s)	659
BseSI	GKGCMC	1 cut(s)	193
BseX3I	CGGCCG	1 cut(s)	752
BseXI	GCAGC	4 cut(s)	234, 667, 688, 689
BsgI	GTGCAG	1 cut(s)	666
Bsh1285I	CGRYCG	1 cut(s)	755
BshFI	GGCC	3 cut(s)	547, 559, 754
BsiEI	CGRYCG	1 cut(s)	755
BsiHKAI	GWGCWC	1 cut(s)	607
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	2 cut(s)	268, 751
BslI	CCNNNNNNNGG	2 cut(s)	554, 740
BsmAI	GTCTC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	3 cut(s)	547, 559, 754
Bso31I	GGTCTC	1 cut(s)	571
BsoBI	CYCGRG	1 cut(s)	267
Bsp1286I	GDGCHC	2 cut(s)	193, 607
Bsp143I	GATC	1 cut(s)	590
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	3 cut(s)	434, 666, 755
BspANI	GGCC	3 cut(s)	547, 559, 754
BspCNI	CTCAG	1 cut(s)	581
BspHI	TCATGA	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	571
BsrFI	RCCGGY	1 cut(s)	750
BsrI	ACTGG	1 cut(s)	560
BssAI	RCCGGY	1 cut(s)	750
BssECI	CCNNGG	5 cut(s)	22, 267, 482, 554, 653
BssMI	GATC	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	653
Bst2UI	CCWGG	3 cut(s)	23, 483, 555
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	3 cut(s)	411, 704, 714
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	132, 244
BstDEI	CTNAG	4 cut(s)	6, 123, 216, 568
BstF5I	GGATG	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	1 cut(s)	593
BstMAI	GTCTC	1 cut(s)	571
BstMBI	GATC	1 cut(s)	590
BstMCI	CGRYCG	1 cut(s)	755
BstMWI	GCNNNNNNNGC	7 cut(s)	188, 263, 506, 665, 674, 689, 698
BstNI	CCWGG	3 cut(s)	23, 483, 555
BstSCI	CCNGG	5 cut(s)	21, 266, 267, 481, 553
BstSFI	CTRYAG	2 cut(s)	393, 510
BstSLI	GKGCMC	1 cut(s)	193
BstV1I	GCAGC	4 cut(s)	234, 667, 688, 689
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
BstZI	CGGCCG	1 cut(s)	752
BsuRI	GGCC	3 cut(s)	547, 559, 754
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	567
Cac8I	GCNNGC	2 cut(s)	132, 244
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	750
Cfr13I	GGNCC	3 cut(s)	503, 545, 557
Cfr9I	CCCGGG	1 cut(s)	267
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	1 cut(s)	89
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	4 cut(s)	6, 123, 216, 568
DpnI	GATC	1 cut(s)	592
DpnII	GATC	1 cut(s)	590
DraI	TTTAAA	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	752
EagI	CGGCCG	1 cut(s)	752
Eam1104I	CTCTTC	3 cut(s)	411, 704, 714
EarI	CTCTTC	3 cut(s)	411, 704, 714
EclXI	CGGCCG	1 cut(s)	752
Eco130I	CCWWGG	1 cut(s)	653
Eco31I	GGTCTC	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	503
Eco52I	CGGCCG	1 cut(s)	752
Eco57I	CTGAAG	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	367
EcoRII	CCWGG	3 cut(s)	21, 481, 553
EcoT14I	CCWWGG	1 cut(s)	653
ErhI	CCWWGG	1 cut(s)	653
FaeI	CATG	1 cut(s)	92
FatI	CATG	1 cut(s)	88
FauI	CCCGC	1 cut(s)	441
FauNDI	CATATG	1 cut(s)	424
Fnu4HI	GCNGC	5 cut(s)	223, 678, 681, 702, 755
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	5 cut(s)	223, 678, 681, 702, 755
FspBI	CTAG	2 cut(s)	75, 258
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	5 cut(s)	223, 678, 681, 702, 755
HaeIII	GGCC	3 cut(s)	547, 559, 754
HapII	CCGG	2 cut(s)	268, 751
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HincII	GTYRAC	2 cut(s)	101, 489
HindII	GTYRAC	2 cut(s)	101, 489
HindIII	AAGCTT	2 cut(s)	128, 244
HpaII	CCGG	2 cut(s)	268, 751
Hpy166II	GTNNAC	2 cut(s)	101, 489
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	3 cut(s)	89, 251, 296
Hpy8I	GTNNAC	2 cut(s)	101, 489
Hpy99I	CGWCG	1 cut(s)	616
HpyAV	CCTTC	3 cut(s)	81, 160, 203
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	3 cut(s)	103, 187, 320
HpyCH4V	TGCA	5 cut(s)	48, 158, 199, 683, 704
HpyF10VI	GCNNNNNNNGC	7 cut(s)	188, 263, 506, 665, 674, 689, 698
HpyF3I	CTNAG	4 cut(s)	6, 123, 216, 568
HpySE526I	ACGT	3 cut(s)	103, 187, 320
Hsp92II	CATG	1 cut(s)	92
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	590
Lsp1109I	GCAGC	4 cut(s)	234, 667, 688, 689
LweI	GCATC	2 cut(s)	253, 352
MaeI	CTAG	2 cut(s)	75, 258
MaeII	ACGT	3 cut(s)	103, 187, 320
MaeIII	GTNAC	2 cut(s)	38, 104
MalI	GATC	1 cut(s)	592
MboI	GATC	1 cut(s)	590
MboII	GAAGA	5 cut(s)	182, 296, 428, 721, 731
MflI	RGATCY	1 cut(s)	590
MhlI	GDGCHC	2 cut(s)	193, 607
MluCI	AATT	2 cut(s)	201, 367
MmeI	TCCRAC	1 cut(s)	604
MnlI	CCTC	7 cut(s)	247, 412, 558, 630, 637, 687, 691
MseI	TTAA	3 cut(s)	578, 597, 687
MspA1I	CMGCKG	1 cut(s)	680
MspI	CCGG	2 cut(s)	268, 751
MspR9I	CCNGG	5 cut(s)	23, 268, 269, 483, 555
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	3 cut(s)	23, 483, 555
MwoI	GCNNNNNNNGC	7 cut(s)	188, 263, 506, 665, 674, 689, 698
NciI	CCSGG	2 cut(s)	268, 269
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	1 cut(s)	590
NlaIII	CATG	1 cut(s)	92
NmuCI	GTSAC	2 cut(s)	38, 104
PagI	TCATGA	1 cut(s)	88
PctI	GAATGC	1 cut(s)	272
PflMI	CCANNNNNTGG	1 cut(s)	740
PkrI	GCNGC	5 cut(s)	224, 679, 682, 703, 756
Psp6I	CCWGG	3 cut(s)	21, 481, 553
PspGI	CCWGG	3 cut(s)	21, 481, 553
PspPI	GGNCC	3 cut(s)	503, 545, 557
PsuI	RGATCY	1 cut(s)	590
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	578, 597, 687
SatI	GCNGC	5 cut(s)	223, 678, 681, 702, 755
Sau3AI	GATC	1 cut(s)	590
Sau96I	GGNCC	3 cut(s)	503, 545, 557
ScrFI	CCNGG	5 cut(s)	23, 268, 269, 483, 555
SduI	GDGCHC	2 cut(s)	193, 607
SfaNI	GCATC	2 cut(s)	253, 352
SfcI	CTRYAG	2 cut(s)	393, 510
SinI	GGWCC	1 cut(s)	503
SmaI	CCCGGG	1 cut(s)	269
SrfI	GCCCGGGC	1 cut(s)	269
Sse9I	AATT	2 cut(s)	201, 367
SsiI	CCGC	3 cut(s)	434, 666, 755
SspMI	CTAG	2 cut(s)	75, 258
StyD4I	CCNGG	5 cut(s)	21, 266, 267, 481, 553
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	3 cut(s)	106, 190, 323
TaqI	TCGA	1 cut(s)	276
TasI	AATT	2 cut(s)	201, 367
TauI	GCSGC	1 cut(s)	757
Tru1I	TTAA	3 cut(s)	578, 597, 687
Tru9I	TTAA	3 cut(s)	578, 597, 687
TscAI	CASTG	1 cut(s)	567
TseFI	GTSAC	2 cut(s)	38, 104
TseI	GCWGC	4 cut(s)	222, 677, 680, 701
Tsp45I	GTSAC	2 cut(s)	38, 104
TspMI	CCCGGG	1 cut(s)	267
TspRI	CASTG	1 cut(s)	567
Van91I	CCANNNNNTGG	1 cut(s)	740
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	1 cut(s)	367
XmaI	CCCGGG	1 cut(s)	267
XspI	CTAG	2 cut(s)	75, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.