Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006565

Physical Location & Seq

Genomic Coordinates Forward (+)

78040357 .. 78043290

Gene Structure 2934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0583300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCGGAGCACATACCTGAAGATGTTATAGTAAAAATCTTCCAGAGGTTGCCCATCAAATCCTTAATCCGCTTCACCTCCCTTTCGAAGCGCTGGCGCTTCATCATACTCCGCGACCGTCAGTTCGCCACATCCCAGTACCAAATCGCTTCCGACAACAACAAAAGTGTATGTTTCCGTACCTGCTTTGATTTTGATTGTGAATTCTTCAAATCGCTGAACTTGCAAACGACGACGTCGGCTTTGACAAATCTTCGCTGCCCATTCAAGCAACCTAACTGTGTGGTTTTCTTATACTCATCATGCCGTGGTTTGGTATTTGCATCTTTTAATTCAATAGCGAGGTATATATGGAACCCATCAACTGGGTTCTTCAAAAAACTACCTGATCCAGGTGTTCAAACAGAGTTCCAAGTCTTCACTGGTTTTGGGTATATCTCAGCCACCGACGAGTACAAGATTCTCATAGCCACCTCTAAACGTGGGAAGAAGGGAGAGGGAGCCAAGATCCGCATCTTCTCGTCGAAATCCAACTCTTGGAAAAGGATTCAAGATTCCCAGTATTTCGTCTTGTCAACGACATTTGACGGGACTCTTTTAAATGAGGCACTTCATTGGCTGCGCAGATCTGATGTCGTTATAGTTGCTTTTGATTTAGCAGATGAGGAGTTCCGGACAATGCCGCTACCGGTTGTTGAGGATCACTATGCTGGTGACTATTTCAGACATCTAGGGGACTTTGGAGGTTGCCTGTGTGTGTTTGGTCAGGCTGATACTAATGCTGGCTCTATGGATTTGTGGGTCATGAGGGAATATGATGCGGGTAACTCCTGGACTAAGCTGTTTAACTTAAAGTTTTCCAATCAGCCTGAGCAGATAAATTTTGTCAAGCCAATCTGGGTTATGGAAACTAGTACATTTATGGAGGTACGTACTAATTCTGAGAGGGATCCGAAGTGGGTAAGGAGTTATCATAAGGAAGAGAAGATCGAAGAGATTCATATGAAAGAGAACATATTCAAAGATATTCGTACGGAAAGAGAGTCAGTGATTGGATATGAAGAGAGTCTACTTTGGCTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015030 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0019222 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071704 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U1

Protein Analysis

361

Amino Acids

42.14

Weight (kDa)

7.56

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	3 - 39	1.1e-06	F-box-like
F-box	PF00646	4 - 39	1.2e-08	F-box domain
FBA_3	PF08268	66 - 285	6.6e-24	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	88 - 283	5.4e-06	F-box protein At3g26010-like, beta-propeller
FBA_1	PF07734	93 - 357	5.9e-25	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49590 AT1G49590 AT1G49590
fragaria_vesca	FvH4_2g06680 FvH4_2g06680 FvH4_2g06680
malus_domestica	MD05G1075500.v1.1
prunus_persica	Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1
pyrus_communis	pycom05g06920
rosa_chinensis	RchiOBHm_Chr6g0258731
rosa_laevigata	RLG00000014586
rosa_multiflora	Rmu_ssc0000033.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206050
rosa_rugosa	Rorug05G0583300
rosa_samantha	Rh6AG035700 Rh6AG099700 Rh6BG091300 Rh6CG088700 Rh6DG083000
rosa_wichuraiana	Rw6G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	239
Acc16I	TGCGCA	1 cut(s)	623
Acc36I	ACCTGC	1 cut(s)	191
AccB7I	CCANNNNNTGG	2 cut(s)	365, 537
AccI	GTMKAC	1 cut(s)	1069
AccII	CGCG	1 cut(s)	114
AccIII	TCCGGA	1 cut(s)	672
AciI	CCGC	6 cut(s)	5, 70, 112, 511, 683, 821
AclWI	GGATC	5 cut(s)	383, 502, 708, 944, 957
AcsI	RAATTY	2 cut(s)	203, 880
AcuI	CTGAAG	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	7 cut(s)	140, 181, 455, 916, 930, 934, 1033
AfeI	AGCGCT	1 cut(s)	92
AfiI	CCNNNNNNNGG	4 cut(s)	313, 365, 392, 537
AgeI	ACCGGT	1 cut(s)	688
AgsI	TTSAA	7 cut(s)	211, 268, 336, 376, 401, 551, 1021
AhlI	ACTAGT	1 cut(s)	911
AjnI	CCWGG	2 cut(s)	391, 830
AluBI	AGCT	1 cut(s)	841
AluI	AGCT	1 cut(s)	841
Alw21I	GWGCWC	1 cut(s)	12
AlwI	GGATC	5 cut(s)	383, 502, 708, 944, 957
Aor13HI	TCCGGA	1 cut(s)	672
Aor51HI	AGCGCT	1 cut(s)	92
ApeKI	GCWGC	2 cut(s)	258, 619
ApoI	RAATTY	2 cut(s)	203, 880
ArsI	GACNNNNNNTTYG	4 cut(s)	107, 139, 226, 258
AsiGI	ACCGGT	1 cut(s)	688
Asp700I	GAANNNNTTC	2 cut(s)	996, 1016
AspLEI	GCGC	3 cut(s)	93, 99, 624
AsuHPI	GGTGA	2 cut(s)	67, 725
AsuII	TTCGAA	1 cut(s)	86
BamHI	GGATCC	1 cut(s)	949
BarI	GAAGNNNNNNTAC	2 cut(s)	1053, 1085
BbsI	GAAGAC	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	245, 606
BccI	CCATC	2 cut(s)	62, 367
BceAI	ACGGC	1 cut(s)	291
BciT130I	CCWGG	2 cut(s)	393, 832
BcuI	ACTAGT	1 cut(s)	911
BfaI	CTAG	2 cut(s)	731, 912
BfoI	RGCGCY	2 cut(s)	94, 100
BfuAI	ACCTGC	1 cut(s)	191
BglII	AGATCT	1 cut(s)	626
BisI	GCNGC	3 cut(s)	259, 620, 683
BlsI	GCNGC	3 cut(s)	260, 621, 684
Bme1390I	CCNGG	2 cut(s)	393, 832
BmiI	GGNNCC	3 cut(s)	356, 502, 951
BmrFI	CCNGG	2 cut(s)	393, 832
BmrI	ACTGGG	3 cut(s)	130, 375, 553
BmsI	GCATC	3 cut(s)	332, 522, 808
BmuI	ACTGGG	3 cut(s)	130, 375, 553
BpiI	GAAGAC	1 cut(s)	409
Bpu10I	CCTNAGC	1 cut(s)	870
Bpu14I	TTCGAA	1 cut(s)	86
BsaAI	YACGTR	1 cut(s)	932
BsaBI	GATNNNNATC	1 cut(s)	512
BsaHI	GRCGYC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	307
BsaWI	WCCGGW	2 cut(s)	672, 688
Bsc4I	CCNNNNNNNGG	4 cut(s)	313, 365, 392, 537
Bse118I	RCCGGY	1 cut(s)	688
Bse1I	ACTGG	4 cut(s)	136, 370, 427, 559
Bse8I	GATNNNNATC	1 cut(s)	512
BseAI	TCCGGA	1 cut(s)	672
BseBI	CCWGG	2 cut(s)	393, 832
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	1 cut(s)	131
BseJI	GATNNNNATC	1 cut(s)	512
BseLI	CCNNNNNNNGG	4 cut(s)	313, 365, 392, 537
BseMII	CTCAG	3 cut(s)	453, 861, 933
BseNI	ACTGG	4 cut(s)	136, 370, 427, 559
BseRI	GAGGAG	1 cut(s)	680
BseXI	GCAGC	2 cut(s)	245, 606
Bsh1236I	CGCG	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	118
BshTI	ACCGGT	1 cut(s)	688
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	673, 689
BsiWI	CGTACG	1 cut(s)	1031
BslFI	GGGAC	2 cut(s)	604, 749
BslI	CCNNNNNNNGG	4 cut(s)	313, 365, 392, 537
BsmFI	GGGAC	2 cut(s)	604, 749
Bsp119I	TTCGAA	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp13I	TCCGGA	1 cut(s)	672
Bsp143I	GATC	6 cut(s)	388, 507, 626, 700, 949, 987
BspACI	CCGC	6 cut(s)	5, 70, 112, 511, 683, 821
BspCNI	CTCAG	3 cut(s)	452, 862, 934
BspEI	TCCGGA	1 cut(s)	672
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	3 cut(s)	356, 502, 951
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	5 cut(s)	383, 502, 708, 944, 957
BspT104I	TTCGAA	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	688
BsrI	ACTGG	4 cut(s)	136, 370, 427, 559
BssAI	RCCGGY	1 cut(s)	688
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	6 cut(s)	388, 507, 626, 700, 949, 987
BssNI	GRCGYC	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	393, 832
Bst4CI	ACNGT	2 cut(s)	119, 281
Bst6I	CTCTTC	3 cut(s)	975, 987, 1056
BstACI	GRCGYC	1 cut(s)	236
BstBAI	YACGTR	1 cut(s)	932
BstBI	TTCGAA	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	95, 784
BstDEI	CTNAG	4 cut(s)	439, 837, 870, 942
BstDSI	CCRYGG	1 cut(s)	307
BstENI	CCTNNNNNAGG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	114
BstH2I	RGCGCY	2 cut(s)	94, 100
BstHHI	GCGC	3 cut(s)	93, 99, 624
BstKTI	GATC	6 cut(s)	391, 510, 629, 703, 952, 990
BstMBI	GATC	6 cut(s)	388, 507, 626, 700, 949, 987
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNI	CCWGG	2 cut(s)	393, 832
BstSCI	CCNGG	2 cut(s)	391, 830
BstSNI	TACGTA	1 cut(s)	932
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	245, 606
BstV2I	GAAGAC	1 cut(s)	409
BstX2I	RGATCY	3 cut(s)	507, 626, 949
BstYI	RGATCY	3 cut(s)	507, 626, 949
BtgI	CCRYGG	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	420, 1053
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	95, 784
CciI	TCATGA	1 cut(s)	804
CfoI	GCGC	3 cut(s)	93, 99, 624
Cfr10I	RCCGGY	1 cut(s)	688
Csp6I	GTAC	7 cut(s)	139, 180, 454, 915, 929, 933, 1032
CspAI	ACCGGT	1 cut(s)	688
CviAII	CATG	2 cut(s)	303, 805
CviQI	GTAC	7 cut(s)	139, 180, 454, 915, 929, 933, 1032
DdeI	CTNAG	4 cut(s)	439, 837, 870, 942
DpnI	GATC	6 cut(s)	390, 509, 628, 702, 951, 989
DpnII	GATC	6 cut(s)	388, 507, 626, 700, 949, 987
DraI	TTTAAA	1 cut(s)	600
Eam1104I	CTCTTC	3 cut(s)	975, 987, 1056
EarI	CTCTTC	3 cut(s)	975, 987, 1056
EciI	GGCGGA	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	932
Eco47III	AGCGCT	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	39
EcoNI	CCTNNNNNAGG	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	2 cut(s)	391, 830
FaeI	CATG	2 cut(s)	306, 808
FaqI	GGGAC	2 cut(s)	604, 749
FatI	CATG	2 cut(s)	302, 804
FauI	CCCGC	1 cut(s)	814
FauNDI	CATATG	1 cut(s)	1002
FblI	GTMKAC	1 cut(s)	1069
Fnu4HI	GCNGC	3 cut(s)	259, 620, 683
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	3 cut(s)	259, 620, 683
FspBI	CTAG	2 cut(s)	731, 912
FspI	TGCGCA	1 cut(s)	623
GlaI	GCGC	3 cut(s)	92, 98, 623
GluI	GCNGC	3 cut(s)	259, 620, 683
HaeII	RGCGCY	2 cut(s)	94, 100
HapII	CCGG	2 cut(s)	673, 689
HhaI	GCGC	3 cut(s)	93, 99, 624
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	2 cut(s)	306, 808
Hin6I	GCGC	3 cut(s)	91, 97, 622
HinP1I	GCGC	3 cut(s)	91, 97, 622
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	7 cut(s)	460, 547, 554, 592, 997, 1043, 1066
HpaII	CCGG	2 cut(s)	673, 689
HphI	GGTGA	2 cut(s)	67, 725
Hpy166II	GTNNAC	2 cut(s)	576, 1070
Hpy188I	TCNGA	5 cut(s)	154, 631, 725, 943, 954
Hpy188III	TCNNGA	4 cut(s)	43, 551, 673, 805
Hpy8I	GTNNAC	2 cut(s)	576, 1070
Hpy99I	CGWCG	5 cut(s)	235, 238, 241, 452, 526
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	2 cut(s)	119, 281
HpyCH4IV	ACGT	3 cut(s)	236, 481, 931
HpyCH4V	TGCA	2 cut(s)	226, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	4 cut(s)	439, 837, 870, 942
HpySE526I	ACGT	3 cut(s)	236, 481, 931
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	2 cut(s)	306, 808
HspAI	GCGC	3 cut(s)	91, 97, 622
Kpn2I	TCCGGA	1 cut(s)	672
Kzo9I	GATC	6 cut(s)	388, 507, 626, 700, 949, 987
LmnI	GCTCC	2 cut(s)	7, 500
Lsp1109I	GCAGC	2 cut(s)	245, 606
LweI	GCATC	3 cut(s)	332, 522, 808
MaeI	CTAG	2 cut(s)	731, 912
MaeII	ACGT	3 cut(s)	236, 481, 931
MaeIII	GTNAC	2 cut(s)	713, 824
MalI	GATC	6 cut(s)	390, 509, 628, 702, 951, 989
MboI	GATC	6 cut(s)	388, 507, 626, 700, 949, 987
MflI	RGATCY	3 cut(s)	507, 626, 949
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	4 cut(s)	203, 331, 880, 937
MlyI	GAGTC	3 cut(s)	586, 1052, 1075
MmeI	TCCRAC	2 cut(s)	177, 555
MroI	TCCGGA	1 cut(s)	672
MroXI	GAANNNNTTC	2 cut(s)	996, 1016
MseI	TTAA	5 cut(s)	65, 330, 599, 846, 851
MspI	CCGG	2 cut(s)	673, 689
MspR9I	CCNGG	2 cut(s)	393, 832
MvaI	CCWGG	2 cut(s)	393, 832
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	223
NdeI	CATATG	1 cut(s)	1002
NdeII	GATC	6 cut(s)	388, 507, 626, 700, 949, 987
NlaIII	CATG	2 cut(s)	306, 808
NlaIV	GGNNCC	3 cut(s)	356, 502, 951
NmuCI	GTSAC	1 cut(s)	713
NsbI	TGCGCA	1 cut(s)	623
NspV	TTCGAA	1 cut(s)	86
PagI	TCATGA	1 cut(s)	804
PdmI	GAANNNNTTC	2 cut(s)	996, 1016
PfeI	GAWTC	4 cut(s)	460, 547, 554, 997
Pfl23II	CGTACG	1 cut(s)	1031
PflFI	GACNNNGTC	1 cut(s)	235
PflMI	CCANNNNNTGG	2 cut(s)	365, 537
PfoI	TCCNGGA	1 cut(s)	830
PinAI	ACCGGT	1 cut(s)	688
PkrI	GCNGC	3 cut(s)	260, 621, 684
PleI	GAGTC	3 cut(s)	586, 1051, 1074
PpsI	GAGTC	3 cut(s)	586, 1051, 1074
Ppu21I	YACGTR	1 cut(s)	932
Psp6I	CCWGG	2 cut(s)	391, 830
PspGI	CCWGG	2 cut(s)	391, 830
PspLI	CGTACG	1 cut(s)	1031
PspN4I	GGNNCC	3 cut(s)	356, 502, 951
PsuI	RGATCY	3 cut(s)	507, 626, 949
PsyI	GACNNNGTC	1 cut(s)	235
RsaI	GTAC	7 cut(s)	140, 181, 455, 916, 930, 934, 1033
RsaNI	GTAC	7 cut(s)	139, 180, 454, 915, 929, 933, 1032
SaqAI	TTAA	5 cut(s)	65, 330, 599, 846, 851
SatI	GCNGC	3 cut(s)	259, 620, 683
Sau3AI	GATC	6 cut(s)	388, 507, 626, 700, 949, 987
SchI	GAGTC	3 cut(s)	586, 1052, 1075
ScrFI	CCNGG	2 cut(s)	393, 832
SduI	GDGCHC	1 cut(s)	12
SfaNI	GCATC	3 cut(s)	332, 522, 808
SfuI	TTCGAA	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	1079
SmoI	CTYRAG	1 cut(s)	1079
SnaBI	TACGTA	1 cut(s)	932
SpeI	ACTAGT	1 cut(s)	911
Sse9I	AATT	4 cut(s)	203, 331, 880, 937
SsiI	CCGC	6 cut(s)	5, 70, 112, 511, 683, 821
SspMI	CTAG	2 cut(s)	731, 912
StyD4I	CCNGG	2 cut(s)	391, 830
TaaI	ACNGT	2 cut(s)	119, 281
TaiI	ACGT	3 cut(s)	239, 484, 934
TaqI	TCGA	3 cut(s)	86, 524, 990
TasI	AATT	4 cut(s)	203, 331, 880, 937
TatI	WGTACW	2 cut(s)	453, 914
TauI	GCSGC	1 cut(s)	685
TfiI	GAWTC	4 cut(s)	460, 547, 554, 997
Tru1I	TTAA	5 cut(s)	65, 330, 599, 846, 851
Tru9I	TTAA	5 cut(s)	65, 330, 599, 846, 851
TscAI	CASTG	2 cut(s)	427, 1053
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	2 cut(s)	258, 619
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	5 cut(s)	91, 602, 989, 1019, 1074
TspGWI	ACGGA	2 cut(s)	167, 1049
TspRI	CASTG	2 cut(s)	427, 1053
Tth111I	GACNNNGTC	1 cut(s)	235
Van91I	CCANNNNNTGG	2 cut(s)	365, 537
XagI	CCTNNNNNAGG	1 cut(s)	390
XapI	RAATTY	2 cut(s)	203, 880
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	1069
XmnI	GAANNNNTTC	2 cut(s)	996, 1016
XspI	CTAG	2 cut(s)	731, 912
ZraI	GACGTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.