Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006565

Physical Location & Seq

Genomic Coordinates Forward (+)

16187089 .. 16192626

Gene Structure 5538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1075500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGACTGAGTATTGGGTTAGCCAGGGTAACAAGTGGTGTGACTTCTGCAAAATCTACATCTCGCACAATCCTTCCAGCGTCAGAAATCATGAGCTTGGTCAACGACACAAGGATAATGTTGCAAAGAAGCTTGCTGATATGCGAAAAGAAAAAGCTGCAAAGGAGAAGGAAGAAAAGGAAGCAGAGCGCGCCCTTCTGCAAATCGAAGCAAAAGCTAAGCGCAGCTATCAAAAGGATGTGGCAAACTTAAAGGAGGCTAGAGATTCTCGTGCATTCGAAGTTGATGATGATGATCTAGAGAAATGGCAGTATAACAGCACATCTGGTTATTATTACAATCAAAGTAATGGTTTTTACTATGATCCAAATTCGGGCTTCTACTATTCTGATTCTATAGGCAAGTGGGTAACACAGGAAGAGGCATATGCGAACCCGCAGTTCTTATCCAATGCTGGATATAAAGAAACCATTTTGAAAAAGCCTGTGTCAGCCTCAGGTGCAGGATCAGCTATAGAAAACAAAGGTGGTGATACAACTCAAAATGGGCCTCCACCTGGGCCAGTGGTTTCATCTTCTTTAAATCCAAAGAGATCTGTTAAAGCTGCTGCTTCCTCCGTTGCTGTTGGAAAGAGAAAGAGAGATGAGAAGCCAAGGGCTATATCCGCTGAAGAATCAGCTGCACTTAAAGCAAGGGAAGCTGCAAGAAAGAGAGTTCAAGAGAGAGAGAAACCGTTGCTTGGCCTTTACCGGCCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015030 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0019222 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071704 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U1

Protein Analysis

253

Amino Acids

28.35

Weight (kDa)

9.28

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-U1	PF06220	11 - 42	1.3e-08	U1 zinc finger
OCRE	PF17780	100 - 147	6.3e-15	OCRE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49590 AT1G49590 AT1G49590
fragaria_vesca	FvH4_2g06680 FvH4_2g06680 FvH4_2g06680
malus_domestica	MD05G1075500.v1.1
prunus_persica	Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1 Prupe.8G119200_v2.0.a1
pyrus_communis	pycom05g06920
rosa_chinensis	RchiOBHm_Chr6g0258731
rosa_laevigata	RLG00000014586
rosa_multiflora	Rmu_ssc0000033.1_g000001
rosa_roxburghii	Rroxscaffold_7G00206050
rosa_rugosa	Rorug05G0583300
rosa_samantha	Rh6AG035700 Rh6AG099700 Rh6BG091300 Rh6CG088700 Rh6DG083000
rosa_wichuraiana	Rw6G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	189
AciI	CCGC	2 cut(s)	434, 663
AclWI	GGATC	2 cut(s)	356, 511
AcoI	YGGCCR	1 cut(s)	749
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	687
AfiI	CCNNNNNNNGG	3 cut(s)	371, 554, 737
AgsI	TTSAA	2 cut(s)	475, 716
AjnI	CCWGG	2 cut(s)	21, 553
AluBI	AGCT	9 cut(s)	94, 130, 155, 215, 225, 509, 602, 677, 698
AluI	AGCT	9 cut(s)	94, 130, 155, 215, 225, 509, 602, 677, 698
AlwI	GGATC	2 cut(s)	356, 511
AoxI	GGCC	4 cut(s)	545, 557, 739, 749
ApeKI	GCWGC	6 cut(s)	155, 222, 602, 605, 677, 698
ApoI	RAATTY	1 cut(s)	367
AspLEI	GCGC	3 cut(s)	189, 191, 222
AspS9I	GGNCC	2 cut(s)	545, 557
AsuHPI	GGTGA	1 cut(s)	539
AsuII	TTCGAA	1 cut(s)	276
AxyI	CCTNAGG	1 cut(s)	493
BauI	CACGAG	1 cut(s)	267
BbvI	GCAGC	6 cut(s)	142, 234, 589, 592, 664, 685
BciT130I	CCWGG	2 cut(s)	23, 555
BfaI	CTAG	2 cut(s)	258, 296
BfmI	CTRYAG	2 cut(s)	393, 510
BglII	AGATCT	1 cut(s)	590
BisI	GCNGC	6 cut(s)	156, 223, 603, 606, 678, 699
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	6 cut(s)	157, 224, 604, 607, 679, 700
Bme1390I	CCNGG	2 cut(s)	23, 555
BmgT120I	GGNCC	2 cut(s)	545, 557
BmrFI	CCNGG	2 cut(s)	23, 555
Bpu1102I	GCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	22, 554, 650
Bsc4I	CCNNNNNNNGG	3 cut(s)	371, 554, 737
Bse118I	RCCGGY	1 cut(s)	747
Bse1I	ACTGG	1 cut(s)	560
Bse21I	CCTNAGG	1 cut(s)	493
Bse8I	GATNNNNATC	1 cut(s)	291
BseBI	CCWGG	2 cut(s)	23, 555
BseDI	CCNNGG	3 cut(s)	22, 554, 650
BseGI	GGATG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	3 cut(s)	371, 554, 737
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	1 cut(s)	560
BsePI	GCGCGC	1 cut(s)	187
BseXI	GCAGC	6 cut(s)	142, 234, 589, 592, 664, 685
BsgI	GTGCAG	2 cut(s)	519, 663
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	4 cut(s)	547, 559, 741, 751
BsiSI	CCGG	1 cut(s)	748
BslI	CCNNNNNNNGG	3 cut(s)	371, 554, 737
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	4 cut(s)	547, 559, 741, 751
Bsp119I	TTCGAA	1 cut(s)	276
Bsp143I	GATC	4 cut(s)	292, 361, 503, 590
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	2 cut(s)	434, 663
BspANI	GGCC	4 cut(s)	547, 559, 741, 751
BspCNI	CTCAG	1 cut(s)	506
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	88
BspPI	GGATC	2 cut(s)	356, 511
BspT104I	TTCGAA	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	747
BsrI	ACTGG	1 cut(s)	560
BssAI	RCCGGY	1 cut(s)	747
BssECI	CCNNGG	3 cut(s)	22, 554, 650
BssHII	GCGCGC	1 cut(s)	187
BssMI	GATC	4 cut(s)	292, 361, 503, 590
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	650
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	23, 555
Bst4CI	ACNGT	1 cut(s)	732
Bst6I	CTCTTC	1 cut(s)	411
BstBI	TTCGAA	1 cut(s)	276
BstC8I	GCNNGC	2 cut(s)	132, 189
BstDEI	CTNAG	3 cut(s)	6, 216, 493
BstF5I	GGATG	1 cut(s)	241
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	189, 191, 222
BstKTI	GATC	4 cut(s)	295, 364, 506, 593
BstMBI	GATC	4 cut(s)	292, 361, 503, 590
BstMWI	GCNNNNNNNGC	6 cut(s)	188, 497, 506, 662, 686, 695
BstNI	CCWGG	2 cut(s)	23, 555
BstSCI	CCNGG	2 cut(s)	21, 553
BstSFI	CTRYAG	2 cut(s)	393, 510
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	6 cut(s)	142, 234, 589, 592, 664, 685
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
Bsu36I	CCTNAGG	1 cut(s)	493
BsuRI	GGCC	4 cut(s)	547, 559, 741, 751
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	567
Cac8I	GCNNGC	2 cut(s)	132, 189
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	3 cut(s)	189, 191, 222
Cfr10I	RCCGGY	1 cut(s)	747
Cfr13I	GGNCC	2 cut(s)	545, 557
CseI	GACGC	1 cut(s)	67
CviAII	CATG	1 cut(s)	89
DdeI	CTNAG	3 cut(s)	6, 216, 493
DpnI	GATC	4 cut(s)	294, 363, 505, 592
DpnII	GATC	4 cut(s)	292, 361, 503, 590
DraI	TTTAAA	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	749
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	650
Eco57I	CTGAAG	1 cut(s)	687
Eco81I	CCTNAGG	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	21, 553
EcoT14I	CCWWGG	1 cut(s)	650
ErhI	CCWWGG	1 cut(s)	650
FaeI	CATG	1 cut(s)	92
FatI	CATG	1 cut(s)	88
FauI	CCCGC	1 cut(s)	441
FauNDI	CATATG	1 cut(s)	424
Fnu4HI	GCNGC	6 cut(s)	156, 223, 603, 606, 678, 699
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	6 cut(s)	156, 223, 603, 606, 678, 699
FspBI	CTAG	2 cut(s)	258, 296
GlaI	GCGC	3 cut(s)	188, 190, 221
GluI	GCNGC	6 cut(s)	156, 223, 603, 606, 678, 699
HaeIII	GGCC	4 cut(s)	547, 559, 741, 751
HapII	CCGG	1 cut(s)	748
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	3 cut(s)	189, 191, 222
Hin1II	CATG	1 cut(s)	92
Hin6I	GCGC	3 cut(s)	187, 189, 220
HinP1I	GCGC	3 cut(s)	187, 189, 220
HincII	GTYRAC	1 cut(s)	101
HindII	GTYRAC	1 cut(s)	101
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	3 cut(s)	263, 389, 671
HpaII	CCGG	1 cut(s)	748
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	83, 388
Hpy188III	TCNNGA	3 cut(s)	89, 296, 716
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	81, 160, 203
HpyCH4III	ACNGT	1 cut(s)	732
HpyCH4V	TGCA	8 cut(s)	48, 122, 158, 199, 272, 500, 680, 701
HpyF10VI	GCNNNNNNNGC	6 cut(s)	188, 497, 506, 662, 686, 695
HpyF3I	CTNAG	3 cut(s)	6, 216, 493
Hsp92II	CATG	1 cut(s)	92
HspAI	GCGC	3 cut(s)	187, 189, 220
Kzo9I	GATC	4 cut(s)	292, 361, 503, 590
Lsp1109I	GCAGC	6 cut(s)	142, 234, 589, 592, 664, 685
MaeI	CTAG	2 cut(s)	258, 296
MaeIII	GTNAC	3 cut(s)	26, 38, 406
MalI	GATC	4 cut(s)	294, 363, 505, 592
MboI	GATC	4 cut(s)	292, 361, 503, 590
MboII	GAAGA	4 cut(s)	182, 428, 564, 680
MflI	RGATCY	1 cut(s)	590
MluCI	AATT	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	604
MnlI	CCTC	5 cut(s)	247, 412, 502, 558, 622
MseI	TTAA	4 cut(s)	248, 578, 597, 684
MspA1I	CMGCKG	2 cut(s)	665, 677
MspI	CCGG	1 cut(s)	748
MspR9I	CCNGG	2 cut(s)	23, 555
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	2 cut(s)	23, 555
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	6 cut(s)	188, 497, 506, 662, 686, 695
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	4 cut(s)	292, 361, 503, 590
NlaIII	CATG	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	38
NspV	TTCGAA	1 cut(s)	276
PagI	TCATGA	1 cut(s)	88
PauI	GCGCGC	1 cut(s)	187
PctI	GAATGC	1 cut(s)	272
PfeI	GAWTC	3 cut(s)	263, 389, 671
PkrI	GCNGC	6 cut(s)	157, 224, 604, 607, 679, 700
Psp6I	CCWGG	2 cut(s)	21, 553
PspGI	CCWGG	2 cut(s)	21, 553
PspPI	GGNCC	2 cut(s)	545, 557
PsuI	RGATCY	1 cut(s)	590
PteI	GCGCGC	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	677
SaqAI	TTAA	4 cut(s)	248, 578, 597, 684
SatI	GCNGC	6 cut(s)	156, 223, 603, 606, 678, 699
Sau3AI	GATC	4 cut(s)	292, 361, 503, 590
Sau96I	GGNCC	2 cut(s)	545, 557
ScrFI	CCNGG	2 cut(s)	23, 555
SfcI	CTRYAG	2 cut(s)	393, 510
SfuI	TTCGAA	1 cut(s)	276
Sse9I	AATT	1 cut(s)	367
SsiI	CCGC	2 cut(s)	434, 663
SspMI	CTAG	2 cut(s)	258, 296
StyD4I	CCNGG	2 cut(s)	21, 553
StyI	CCWWGG	1 cut(s)	650
TaaI	ACNGT	1 cut(s)	732
TaqI	TCGA	2 cut(s)	204, 276
TasI	AATT	1 cut(s)	367
TfiI	GAWTC	3 cut(s)	263, 389, 671
Tru1I	TTAA	4 cut(s)	248, 578, 597, 684
Tru9I	TTAA	4 cut(s)	248, 578, 597, 684
TscAI	CASTG	1 cut(s)	567
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	6 cut(s)	155, 222, 602, 605, 677, 698
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	558
TspGWI	ACGGA	1 cut(s)	604
TspRI	CASTG	1 cut(s)	567
XapI	RAATTY	1 cut(s)	367
XbaI	TCTAGA	1 cut(s)	295
XspI	CTAG	2 cut(s)	258, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.