AT1G50270

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
18622017 .. 18624250
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50270.1

Sequence Viewer

Length: 1791 bp
ATGATTGAGCTCAAAACATTGCTTGATCTTCCATTACACTTTCTTCATCTCAAGCAGATCCATTGCTTACTCCTAACTTCTCCGATATTCTATACTCGTCGCGATCTCTTTCTCTCACGTCTTCTCCGTCGCTGCTGCACCGCCGCAACTCAATTCCGCTACGCTCGTCGTTTATTATGTCAACTCCAAACTCTGAGCATTCAACTATGGGATTCGCTCATTGGTCACTTCTCCGGCGGGATTACTCTCAACCGTCGGTTATCATTTCTTGCTTATCGTCATATGCGGCGAAACGGCGTCATCCCTAGCCGCCACACGTTTCCTCCGCTTCTCAAAGCGGTTTTCAAACTGAGAGACTCGAACCCGTTTCAGTTTCATGCTCATATCGTTAAATTCGGGTTGGATTCGGATCCTTTTGTCAGGAATTCGTTGATTTCGGGTTATTCTAGTTCTGGGTTATTCGATTTTGCAAGTCGTCTTTTTGATGGAGCTGAAGATAAGGACGTGGTTACTTGGACTGCAATGATTGATGGGTTTGTGAGAAATGGTTCTGCTTCGGAAGCAATGGTGTATTTCGTGGAGATGAAGAAGACTGGAGTCGCGGCTAACGAAATGACCGTTGTTAGCGTCTTGAAAGCTGCAGGGAAGGTTGAAGATGTTCGATTTGGGAGAAGCGTTCATGGGCTTTACTTAGAAACAGGGAGAGTGAAATGCGATGTGTTCATAGGAAGTTCTCTAGTAGATATGTATGGGAAATGTAGTTGTTATGATGATGCCCAGAAAGTGTTCGATGAAATGCCTAGCAGAAACGTGGTTACTTGGACGGCGTTGATTGCTGGATATGTGCAAAGCCGTTGCTTCGATAAAGGGATGTTGGTTTTCGAGGAGATGTTAAAGAGTGATGTTGCGCCTAATGAGAAGACTCTAAGCAGTGTTCTTTCGGCGTGCGCTCATGTCGGGGCACTTCACCGAGGAAGAAGGGTGCATTGTTATATGATTAAGAATTCGATTGAGATAAACACTACAGCTGGAACTACATTGATTGATCTTTATGTCAAGTGCGGGTGTTTAGAGGAAGCTATACTTGTTTTTGAGAGACTTCATGAGAAAAATGTGTATACTTGGACCGCGATGATTAATGGATTTGCAGCACACGGATATGCTAGAGATGCATTTGATCTCTTTTATACCATGTTGAGTAGTCATGTTTCACCAAATGAAGTTACTTTCATGGCTGTCTTAAGTGCCTGCGCTCATGGAGGTCTTGTGGAAGAGGGTCGAAGGCTTTTCCTGAGCATGAAGGGACGTTTCAATATGGAGCCAAAAGCGGATCACTATGCGTGTATGGTTGATTTATTTGGAAGAAAAGGTTTGCTAGAAGAGGCGAAAGCTTTGATAGAAAGAATGCCAATGGAGCCAACAAATGTGGTATGGGGAGCTCTGTTCGGCTCTTGTTTGTTACACAAAGACTATGAGTTAGGTAAATACGCAGCCTCCCGTGTGATCAAGCTGCAACCTAGTCATAGTGGGAGATACACTCTCTTGGCTAATTTGTACTCGGAATCCCAAAACTGGGATGAAGTCGCTCGGGTAAGAAAGCAAATGAAAGATCAACAGGTGGTGAAATCGCCAGGATTTAGTTGGATCGAAGTGAAAGGCAAGCTTTGTGAATTCATAGCTTTCGATGATAAGAAACCCCTTGAATCTGATGATTTGTACAAGACTCTCGACACTGTTGGGGTGCAAATGAGATTGCCAGATGAATTGGAAGATGTGACTGCTGAATCATGA

Protein Analysis

596

Amino Acids

67.4

Weight (kDa)

8.35

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 167 - 213 1.8e-09 PPR repeat family
PPR PF01535 170 - 200 2.7e-07 PPR repeat
PPR_2 PF13041 269 - 318 2.6e-11 PPR repeat family
PPR PF01535 272 - 301 2.4e-06 PPR repeat
PPR_2 PF13041 370 - 419 5.3e-11 PPR repeat family
E_motif PF20431 488 - 550 4.2e-19 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G50270
fragaria_vesca FvH4_4g13480
malus_domestica MD04G1013900.v1.1
prunus_persica Prupe.1G160900_v2.0.a1
pyrus_communis pycom04g01080
rosa_chinensis RchiOBHm_Chr4g0414091
rosa_laevigata RLG00000008178
rosa_multiflora Rmu_sc0003264.1_g000012 Rmu_sc0006428.1_g000004
rosa_roxburghii Rroxscaffold_5G00358020
rosa_rugosa Rorug04G0125300
rosa_samantha Rh4AG184000 Rh4BG183500 Rh4CG195900 Rh4DG179400
rosa_wichuraiana Rw4G015660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1118
AccII CGCG 3 cut(s) 102, 602, 1130
AclWI GGATC 5 cut(s) 52, 404, 417, 1338, 1652
AcsI RAATTY 4 cut(s) 392, 424, 1003, 1670
AcuI CTGAAG 1 cut(s) 513
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 1556, 1718
AfiI CCNNNNNNNGG 2 cut(s) 1572, 1573
AflII CTTAAG 1 cut(s) 1240
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 6 cut(s) 203, 346, 634, 653, 1312, 1703
AjiI CACGTC 2 cut(s) 119, 505
AjnI CCWGG 1 cut(s) 1630
Alw21I GWGCWC 2 cut(s) 12, 1441
Alw26I GTCTC 2 cut(s) 348, 1090
AlwI GGATC 5 cut(s) 52, 404, 417, 1338, 1652
Ama87I CYCGRG 1 cut(s) 1587
ApeKI GCWGC 6 cut(s) 132, 135, 638, 1148, 1490, 1510
ApoI RAATTY 4 cut(s) 392, 424, 1003, 1670
AseI ATTAAT 1 cut(s) 1137
Asp700I GAANNNNTTC 3 cut(s) 547, 657, 785
AspLEI GCGC 3 cut(s) 910, 950, 1253
AspS9I GGNCC 1 cut(s) 1125
AsuHPI GGTGA 3 cut(s) 959, 1203, 1633
AvaI CYCGRG 1 cut(s) 1587
AvaII GGWCC 1 cut(s) 1125
BaeGI GKGCMC 1 cut(s) 964
BamHI GGATCC 1 cut(s) 409
BanII GRGCYC 2 cut(s) 12, 1441
BbsI GAAGAC 3 cut(s) 113, 596, 926
Bbv12I GWGCWC 2 cut(s) 12, 1441
BbvI GCAGC 6 cut(s) 119, 122, 625, 1160, 1497, 1502
BccI CCATC 2 cut(s) 479, 524
BceAI ACGGC 3 cut(s) 310, 837, 840
BciT130I CCWGG 1 cut(s) 1632
BclI TGATCA 1 cut(s) 1503
BcoDI GTCTC 2 cut(s) 348, 1090
BfaI CTAG 7 cut(s) 306, 447, 737, 801, 1164, 1376, 1518
BfmI CTRYAG 2 cut(s) 639, 1023
BfrI CTTAAG 1 cut(s) 1240
Bme1390I CCNGG 1 cut(s) 1632
Bme18I GGWCC 1 cut(s) 1125
BmeT110I CYCGRG 1 cut(s) 1587
BmgBI CACGTC 2 cut(s) 119, 505
BmgT120I GGNCC 1 cut(s) 1125
BmiI GGNNCC 3 cut(s) 411, 1320, 1416
BmrFI CCNGG 1 cut(s) 1632
BmrI ACTGGG 1 cut(s) 1582
BmsI GCATC 2 cut(s) 763, 1159
BmuI ACTGGG 1 cut(s) 1582
BoxI GACNNNNGTC 1 cut(s) 596
BpiI GAAGAC 3 cut(s) 113, 596, 926
BplI GAGNNNNNCTC 2 cut(s) 1522, 1554
BpmI CTGGAG 1 cut(s) 615
Bpu10I CCTNAGC 1 cut(s) 1292
BpuEI CTTGAG 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 408
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 970
BsaXI ACNNNNNCTCC 8 cut(s) 108, 138, 307, 337, 1251, 1281, 1478, 1508
Bsc4I CCNNNNNNNGG 2 cut(s) 1572, 1573
Bse1I ACTGG 2 cut(s) 598, 1577
Bse3DI GCAATG 4 cut(s) 17, 61, 528, 570
Bse8I GATNNNNATC 1 cut(s) 408
BseBI CCWGG 1 cut(s) 1632
BseDI CCNNGG 1 cut(s) 970
BseGI GGATG 3 cut(s) 300, 876, 1582
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 2 cut(s) 1572, 1573
BseMI GCAATG 4 cut(s) 17, 61, 528, 570
BseMII CTCAG 3 cut(s) 185, 341, 1283
BseNI ACTGG 2 cut(s) 598, 1577
BseRI GAGGAG 1 cut(s) 899
BseSI GKGCMC 1 cut(s) 964
BseXI GCAGC 6 cut(s) 119, 122, 625, 1160, 1497, 1502
BsgI GTGCAG 1 cut(s) 121
Bsh1236I CGCG 3 cut(s) 102, 602, 1130
BsiHKAI GWGCWC 2 cut(s) 12, 1441
BsiHKCI CYCGRG 1 cut(s) 1587
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 1317
BslI CCNNNNNNNGG 2 cut(s) 1572, 1573
BsmAI GTCTC 2 cut(s) 348, 1090
BsmFI GGGAC 1 cut(s) 1317
BsmI GAATGC 2 cut(s) 198, 1410
BsoBI CYCGRG 1 cut(s) 1587
Bsp1286I GDGCHC 3 cut(s) 12, 964, 1441
Bsp1407I TGTACA 1 cut(s) 1716
Bsp68I TCGCGA 1 cut(s) 102
BspCNI CTCAG 3 cut(s) 186, 342, 1284
BspFNI CGCG 3 cut(s) 102, 602, 1130
BspHI TCATGA 2 cut(s) 1102, 1787
BspLI GGNNCC 3 cut(s) 411, 1320, 1416
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 5 cut(s) 52, 404, 417, 1338, 1652
BspTI CTTAAG 1 cut(s) 1240
BsrDI GCAATG 4 cut(s) 17, 61, 528, 570
BsrGI TGTACA 1 cut(s) 1716
BsrI ACTGG 2 cut(s) 598, 1577
BssECI CCNNGG 1 cut(s) 970
BssNAI GTATAC 1 cut(s) 1119
BssNI GRCGYC 1 cut(s) 297
Bst1107I GTATAC 1 cut(s) 1119
Bst2UI CCWGG 1 cut(s) 1632
Bst4CI ACNGT 3 cut(s) 254, 619, 1735
Bst6I CTCTTC 2 cut(s) 1266, 1374
BstACI GRCGYC 1 cut(s) 297
BstAFI CTTAAG 1 cut(s) 1240
BstAUI TGTACA 1 cut(s) 1716
BstC8I GCNNGC 3 cut(s) 946, 1249, 1661
BstDEI CTNAG 5 cut(s) 194, 350, 691, 926, 1292
BstF5I GGATG 3 cut(s) 300, 876, 1582
BstFNI CGCG 3 cut(s) 102, 602, 1130
BstHHI GCGC 3 cut(s) 910, 950, 1253
BstMAI GTCTC 2 cut(s) 348, 1090
BstMWI GCNNNNNNNGC 4 cut(s) 560, 833, 1169, 1414
BstNI CCWGG 1 cut(s) 1632
BstPAI GACNNNNGTC 1 cut(s) 596
BstSCI CCNGG 1 cut(s) 1630
BstSFI CTRYAG 2 cut(s) 639, 1023
BstSLI GKGCMC 1 cut(s) 964
BstUI CGCG 3 cut(s) 102, 602, 1130
BstV1I GCAGC 6 cut(s) 119, 122, 625, 1160, 1497, 1502
BstV2I GAAGAC 3 cut(s) 113, 596, 926
BstX2I RGATCY 2 cut(s) 57, 409
BstYI RGATCY 2 cut(s) 57, 409
BstZ17I GTATAC 1 cut(s) 1119
BtgZI GCGATG 2 cut(s) 729, 1145
BtrI CACGTC 2 cut(s) 119, 505
BtsCI GGATG 3 cut(s) 300, 876, 1582
BtsI GCAGTG 1 cut(s) 937
BtsIMutI CAGTG 2 cut(s) 937, 1731
BtuMI TCGCGA 1 cut(s) 102
Cac8I GCNNGC 3 cut(s) 946, 1249, 1661
CciI TCATGA 2 cut(s) 1102, 1787
CfoI GCGC 3 cut(s) 910, 950, 1253
Cfr13I GGNCC 1 cut(s) 1125
CseI GACGC 2 cut(s) 286, 616
Csp6I GTAC 2 cut(s) 1555, 1717
CspCI CAANNNNNGTGG 2 cut(s) 1407, 1442
CviQI GTAC 2 cut(s) 1555, 1717
DdeI CTNAG 5 cut(s) 194, 350, 691, 926, 1292
Eam1104I CTCTTC 2 cut(s) 1266, 1374
EarI CTCTTC 2 cut(s) 1266, 1374
Ecl136II GAGCTC 2 cut(s) 10, 1439
Eco24I GRGCYC 2 cut(s) 12, 1441
Eco47I GGWCC 1 cut(s) 1125
Eco53kI GAGCTC 2 cut(s) 10, 1439
Eco57I CTGAAG 1 cut(s) 513
Eco88I CYCGRG 1 cut(s) 1587
EcoICRI GAGCTC 2 cut(s) 10, 1439
EcoRI GAATTC 3 cut(s) 424, 1003, 1670
EcoRII CCWGG 1 cut(s) 1630
EcoT22I ATGCAT 1 cut(s) 1174
EcoT38I GRGCYC 2 cut(s) 12, 1441
FalI AAGNNNNNCTT 4 cut(s) 1068, 1100, 1647, 1679
FaqI GGGAC 1 cut(s) 1317
FauI CCCGC 2 cut(s) 230, 1055
FauNDI CATATG 1 cut(s) 282
FbaI TGATCA 1 cut(s) 1503
FblI GTMKAC 1 cut(s) 1118
FokI GGATG 3 cut(s) 287, 883, 1589
FriOI GRGCYC 2 cut(s) 12, 1441
FspBI CTAG 7 cut(s) 306, 447, 737, 801, 1164, 1376, 1518
GlaI GCGC 3 cut(s) 909, 949, 1252
GsuI CTGGAG 1 cut(s) 615
HapII CCGG 1 cut(s) 234
HgaI GACGC 2 cut(s) 286, 616
HhaI GCGC 3 cut(s) 910, 950, 1253
Hin1I GRCGYC 1 cut(s) 297
Hin6I GCGC 3 cut(s) 908, 948, 1251
HinP1I GCGC 3 cut(s) 908, 948, 1251
HincII GTYRAC 1 cut(s) 182
HindII GTYRAC 1 cut(s) 182
HindIII AAGCTT 2 cut(s) 1389, 1661
HinfI GANTC 9 cut(s) 212, 356, 404, 597, 922, 1562, 1703, 1723, 1784
HpaII CCGG 1 cut(s) 234
HphI GGTGA 3 cut(s) 959, 1203, 1633
Hpy166II GTNNAC 2 cut(s) 182, 1119
Hpy188I TCNGA 6 cut(s) 84, 195, 409, 559, 1561, 1708
Hpy188III TCNNGA 7 cut(s) 101, 421, 631, 1103, 1291, 1727, 1788
Hpy8I GTNNAC 2 cut(s) 182, 1119
Hpy99I CGWCG 4 cut(s) 102, 132, 171, 258
HpyAV CCTTC 4 cut(s) 640, 972, 1275, 1294
HpyCH4III ACNGT 3 cut(s) 254, 619, 1735
HpyCH4IV ACGT 5 cut(s) 118, 317, 504, 810, 1306
HpyF10VI GCNNNNNNNGC 4 cut(s) 560, 833, 1169, 1414
HpyF3I CTNAG 5 cut(s) 194, 350, 691, 926, 1292
HpySE526I ACGT 5 cut(s) 118, 317, 504, 810, 1306
Hsp92I GRCGYC 1 cut(s) 297
HspAI GCGC 3 cut(s) 908, 948, 1251
Ksp22I TGATCA 1 cut(s) 1503
LmnI GCTCC 4 cut(s) 488, 1318, 1414, 1436
Lsp1109I GCAGC 6 cut(s) 119, 122, 625, 1160, 1497, 1502
LweI GCATC 2 cut(s) 763, 1159
MaeI CTAG 7 cut(s) 306, 447, 737, 801, 1164, 1376, 1518
MaeII ACGT 5 cut(s) 118, 317, 504, 810, 1306
MaeIII GTNAC 6 cut(s) 224, 508, 814, 1222, 1458, 1774
MflI RGATCY 2 cut(s) 57, 409
MhlI GDGCHC 3 cut(s) 12, 964, 1441
MluCI AATT 7 cut(s) 152, 392, 424, 1003, 1549, 1670, 1763
MlyI GAGTC 4 cut(s) 350, 606, 916, 1717
MmeI TCCRAC 2 cut(s) 381, 1622
MnlI CCTC 8 cut(s) 333, 877, 965, 1066, 1253, 1267, 1375, 1504
Mph1103I ATGCAT 1 cut(s) 1174
MroXI GAANNNNTTC 3 cut(s) 547, 657, 785
MseI TTAA 5 cut(s) 390, 893, 999, 1137, 1241
MslI CAYNNNNRTG 1 cut(s) 1158
MspA1I CMGCKG 1 cut(s) 1028
MspCI CTTAAG 1 cut(s) 1240
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 1632
Mva1269I GAATGC 2 cut(s) 198, 1410
MvaI CCWGG 1 cut(s) 1632
MvnI CGCG 3 cut(s) 102, 602, 1130
MwoI GCNNNNNNNGC 4 cut(s) 560, 833, 1169, 1414
NdeI CATATG 1 cut(s) 282
NlaIV GGNNCC 3 cut(s) 411, 1320, 1416
NmuCI GTSAC 2 cut(s) 224, 1774
NruI TCGCGA 1 cut(s) 102
NsiI ATGCAT 1 cut(s) 1174
PagI TCATGA 2 cut(s) 1102, 1787
PcsI WCGNNNNNNNCGW 3 cut(s) 124, 606, 615
PctI GAATGC 2 cut(s) 198, 1410
PdmI GAANNNNTTC 3 cut(s) 547, 657, 785
PfeI GAWTC 5 cut(s) 212, 404, 1562, 1703, 1784
PleI GAGTC 4 cut(s) 350, 605, 916, 1717
PpsI GAGTC 4 cut(s) 350, 605, 916, 1717
PshAI GACNNNNGTC 1 cut(s) 596
PshBI ATTAAT 1 cut(s) 1137
Psp124BI GAGCTC 2 cut(s) 12, 1441
Psp6I CCWGG 1 cut(s) 1630
PspGI CCWGG 1 cut(s) 1630
PspN4I GGNNCC 3 cut(s) 411, 1320, 1416
PspPI GGNCC 1 cut(s) 1125
PstI CTGCAG 1 cut(s) 643
PsuI RGATCY 2 cut(s) 57, 409
PvuII CAGCTG 1 cut(s) 1028
RruI TCGCGA 1 cut(s) 102
RsaI GTAC 2 cut(s) 1556, 1718
RsaNI GTAC 2 cut(s) 1555, 1717
RseI CAYNNNNRTG 1 cut(s) 1158
SacI GAGCTC 2 cut(s) 12, 1441
SaqAI TTAA 5 cut(s) 390, 893, 999, 1137, 1241
Sau96I GGNCC 1 cut(s) 1125
SchI GAGTC 4 cut(s) 350, 606, 916, 1717
ScrFI CCNGG 1 cut(s) 1632
SduI GDGCHC 3 cut(s) 12, 964, 1441
SfaNI GCATC 2 cut(s) 763, 1159
SfcI CTRYAG 2 cut(s) 639, 1023
SinI GGWCC 1 cut(s) 1125
SmiMI CAYNNNNRTG 1 cut(s) 1158
SmlI CTYRAG 2 cut(s) 50, 1240
SmoI CTYRAG 2 cut(s) 50, 1240
Sse9I AATT 7 cut(s) 152, 392, 424, 1003, 1549, 1670, 1763
SspMI CTAG 7 cut(s) 306, 447, 737, 801, 1164, 1376, 1518
SstI GAGCTC 2 cut(s) 12, 1441
StyD4I CCNGG 1 cut(s) 1630
TaaI ACNGT 3 cut(s) 254, 619, 1735
TaiI ACGT 5 cut(s) 121, 320, 507, 813, 1309
TasI AATT 7 cut(s) 152, 392, 424, 1003, 1549, 1670, 1763
TatI WGTACW 2 cut(s) 1554, 1716
TauI GCSGC 4 cut(s) 146, 289, 312, 605
TfiI GAWTC 5 cut(s) 212, 404, 1562, 1703, 1784
Tru1I TTAA 5 cut(s) 390, 893, 999, 1137, 1241
Tru9I TTAA 5 cut(s) 390, 893, 999, 1137, 1241
TscAI CASTG 2 cut(s) 937, 1738
TseFI GTSAC 2 cut(s) 224, 1774
TseI GCWGC 6 cut(s) 132, 135, 638, 1148, 1490, 1510
Tsp45I GTSAC 2 cut(s) 224, 1774
TspGWI ACGGA 2 cut(s) 116, 1170
TspRI CASTG 2 cut(s) 937, 1738
Vha464I CTTAAG 1 cut(s) 1240
VpaK11BI GGWCC 1 cut(s) 1125
VspI ATTAAT 1 cut(s) 1137
XapI RAATTY 4 cut(s) 392, 424, 1003, 1670
XcmI CCANNNNNNNNNTGG 1 cut(s) 1638
XmiI GTMKAC 1 cut(s) 1118
XmnI GAANNNNTTC 3 cut(s) 547, 657, 785
XspI CTAG 7 cut(s) 306, 447, 737, 801, 1164, 1376, 1518
Zsp2I ATGCAT 1 cut(s) 1174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.