Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0015255

Physical Location & Seq

Genomic Coordinates Reverse (-)

35983029 .. 35985602

Gene Structure 2574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G015660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1920 bp

ATGTTTGTATCAACCTGTACTCTTTCTTTTGTTACATTTCTAATAGAAAAAGAATTATTTATAAGCTGCAGCAAGTCTTGTGACATTGTTCTCACCCATGCGTGCCAGAACTCAACTAGTTTGACACCCATGATGGGTAGCACCATCTTGTCTCTGTGCCACAAAGACACTATCTTTAACCATTTGAAGCAAATTCACTCCCTCCTCATTATCCTTGGCCCACAAAACGATTGCTTGCTCCCCAAGCTTCTCACTTCCATTGCACCCACCTCTAAGCCTACCCATCTTGCCTACGCTTCCTTCCTCATTGACCATGTACAAGCACCCACCTCCACTCACCTATGGAACTCCATCATCAGAGCATTTTCTACCACTTCAGAGCCTCACAGATCCCTTGTTTCGTATTCAACAATGCGCCGAAACGGGGTCGTTCCGGACCAGCACACCTTCCCATTGCTACTCAAGGCCTTTCCCAAGTTGGAAAACAAAGACCCATTTCAGTTTTATGCTCATACAGTGAAATTTGGATTGAATTTGGATCAGTTTGTGGGGAATTCGTTTATATCTGTGTTGTCTGGTTGTGGGTACTTGGAGGCTGCACACCAGGTGTTTGTTGAAAGTGCTGACAAGGATGTGATTGCTTGGACGGCGTTGGTTGATGGGTATGTTAAGAATGGTCATGCTTTGGAAGCAATGAAGTGTTTTGTGGAGATGGGATTGGTGGGAATTAGGGTCGATGAGGTGACTGTTGTTAGTGCTCTTTGTGCTGCTGGAATGGCCGGTGATGTTTGGTTCGGGCGGTGCGTTCATGGGTTCTATGTGGAAGCAGGCAGAGTAAAATGGGATGTCTTTGTTGGTAGTGCTCTTGTTGATATGTACATGAAGTGTGGCTGCCATGACGATGCTCGAAAAGTGTTTAATGCCATGCCGAGTAAAAATGTGGTATCTTGGACTGCGTTGATAGCAGGTTATGTGCAATGTGAGAAATATAAAGATGCACTGCTTGTCTTGAAATGTATGGTTTCAGAGGATGTCAAGCCTAACCAATCTACATTGTCGAGCGTACTTACCTCTTGTGCGCACGTAGGGGCATTGGATCAAGGAAAGTTGATCCATGGCTACATATATAGGCATAGAGTACAAGTGAACATGTTGCTTGGAACAGGGTTAGTAGATATGTATGCAAAATGTGGGTGCATTGTTAAGGCTCTATCGGTTTTCAGCAAGCTGCCCAGCAAGGATGTCTTTACATGGACTGCTATGATTAATGGGTTGGCATCACATGGGGATGCTTTAGGCACTTTGAACTTATTCTCGCGGATGTTACAGAATGGGGTTCTACCTAATGAAGTAACCTTCATGGGTGTTCTTAGTGCGTGTGCTCATAGAGGCCTTGTAGATGAGGGCCGCAAGGCTTTTGGATCAATGAAGCAAGTTTTCCATTTGGAGCCAAATGTAGATCACTACGGCTGTATGGTTGATTTACTTGGTAGGGCTGGGTACTTGGAGGAAGCCAGACAAATGATCGAGGACATGCCAATGTTGCCTACAGCTGGTATATGGGGAACTTTCCTTGGTGCTTGCGTGATTCACAAGAATTTTGAGCTAGGTGAACTTGCAGGAACTCATTTGATCAAGCTAGATTCCAATCACAGTGGAAGATACGTGCTTCTGGCGAACTTGTATTCAACTTGGAAAAAATGGAAAGTAGCTGCTGGCATCAGGAAGCTCATGAAAGGGAAAGGCGTTGAAAAAATACCAGGGTATAGCTGGATAGAAGTCAATGGTGCAATGTTCGAGTTCGCTGCGTTTGACAAATCACATTCCGAAACAGATCATATATATCTGATGTTGGAAAACATGCTTGTGCAGTTGAGACTCTCTGGTTATGTTCCCGATTCTAACCTACTAGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

639

Amino Acids

70.55

Weight (kDa)

7.56

Isoelectric Point (pI)

26.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	210 - 250	8.6e-07	PPR repeat family
PPR_2	PF13041	312 - 361	3.2e-09	PPR repeat family
PPR_2	PF13041	413 - 462	7.6e-10	PPR repeat family
E_motif	PF20431	531 - 593	4.4e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50270
fragaria_vesca	FvH4_4g13480
malus_domestica	MD04G1013900.v1.1
prunus_persica	Prupe.1G160900_v2.0.a1
pyrus_communis	pycom04g01080
rosa_chinensis	RchiOBHm_Chr4g0414091
rosa_laevigata	RLG00000008178
rosa_multiflora	Rmu_sc0003264.1_g000012 Rmu_sc0006428.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358020
rosa_rugosa	Rorug04G0125300
rosa_samantha	Rh4AG184000 Rh4BG183500 Rh4CG195900 Rh4DG179400
rosa_wichuraiana	Rw4G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
Acc16I	TGCGCA	1 cut(s)	1080
Acc36I	ACCTGC	1 cut(s)	956
AccII	CGCG	1 cut(s)	1318
AccIII	TCCGGA	1 cut(s)	433
AciI	CCGC	3 cut(s)	799, 1318, 1408
AclWI	GGATC	5 cut(s)	384, 546, 1104, 1105, 1429
AcoI	YGGCCR	1 cut(s)	777
AcsI	RAATTY	5 cut(s)	192, 521, 532, 553, 1597
AcuI	CTGAAG	1 cut(s)	360
AdeI	CACNNNGTG	1 cut(s)	607
AfaI	GTAC	7 cut(s)	19, 318, 587, 878, 1065, 1140, 1502
AfiI	CCNNNNNNNGG	3 cut(s)	134, 424, 1553
AflIII	ACRYGT	1 cut(s)	1149
AgsI	TTSAA	8 cut(s)	187, 408, 532, 617, 1012, 1306, 1689, 1751
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	2 cut(s)	603, 1759
AluBI	AGCT	9 cut(s)	66, 247, 1228, 1553, 1606, 1639, 1712, 1729, 1770
AluI	AGCT	9 cut(s)	66, 247, 1228, 1553, 1606, 1639, 1712, 1729, 1770
Alw21I	GWGCWC	3 cut(s)	760, 865, 1384
Alw26I	GTCTC	2 cut(s)	156, 1870
AlwI	GGATC	5 cut(s)	384, 546, 1104, 1105, 1429
Aor13HI	TCCGGA	1 cut(s)	433
AoxI	GGCC	5 cut(s)	217, 465, 777, 1390, 1405
ApeKI	GCWGC	8 cut(s)	66, 69, 596, 767, 891, 1228, 1712, 1805
ApoI	RAATTY	5 cut(s)	192, 521, 532, 553, 1597
AseI	ATTAAT	1 cut(s)	1266
Asp700I	GAANNNNTTC	1 cut(s)	1310
AspLEI	GCGC	2 cut(s)	417, 1081
AspS9I	GGNCC	3 cut(s)	218, 436, 1405
AsuHPI	GGTGA	5 cut(s)	85, 329, 754, 794, 1622
AvaII	GGWCC	1 cut(s)	436
Bbv12I	GWGCWC	3 cut(s)	760, 865, 1384
BbvI	GCAGC	8 cut(s)	53, 81, 583, 754, 878, 1215, 1699, 1792
BccI	CCATC	6 cut(s)	127, 152, 291, 359, 653, 706
BceAI	ACGGC	2 cut(s)	663, 1483
BcgI	CGANNNNNNTGC	2 cut(s)	1787, 1821
BciT130I	CCWGG	2 cut(s)	605, 1761
BclI	TGATCA	1 cut(s)	1632
BcoDI	GTCTC	2 cut(s)	156, 1870
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	4 cut(s)	117, 1607, 1640, 1910
BfmI	CTRYAG	2 cut(s)	67, 1548
BfuAI	ACCTGC	1 cut(s)	956
BisI	GCNGC	9 cut(s)	67, 70, 597, 768, 892, 1229, 1408, 1713, 1806
BlsI	GCNGC	9 cut(s)	68, 71, 598, 769, 893, 1230, 1409, 1714, 1807
Bme1390I	CCNGG	2 cut(s)	605, 1761
Bme18I	GGWCC	1 cut(s)	436
BmgT120I	GGNCC	3 cut(s)	218, 436, 1405
BmiI	GGNNCC	1 cut(s)	1449
BmrFI	CCNGG	2 cut(s)	605, 1761
BmsI	GCATC	5 cut(s)	892, 985, 1279, 1286, 1728
BpuEI	CTTGAG	1 cut(s)	446
BsaAI	YACGTR	2 cut(s)	1084, 1666
BsaBI	GATNNNNATC	1 cut(s)	1647
BsaJI	CCNNGG	4 cut(s)	214, 1114, 1573, 1760
BsaWI	WCCGGW	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 424, 1553
Bse118I	RCCGGY	1 cut(s)	779
Bse3DI	GCAATG	5 cut(s)	258, 452, 699, 983, 1797
Bse8I	GATNNNNATC	1 cut(s)	1647
BseAI	TCCGGA	1 cut(s)	433
BseBI	CCWGG	2 cut(s)	605, 1761
BseDI	CCNNGG	4 cut(s)	214, 1114, 1573, 1760
BseGI	GGATG	6 cut(s)	637, 850, 1036, 1246, 1294, 1326
BseJI	GATNNNNATC	1 cut(s)	1647
BseLI	CCNNNNNNNGG	3 cut(s)	134, 424, 1553
BseMI	GCAATG	5 cut(s)	258, 452, 699, 983, 1797
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	8 cut(s)	53, 81, 583, 754, 878, 1215, 1699, 1792
BseYI	CCCAGC	2 cut(s)	1232, 1496
BsgI	GTGCAG	2 cut(s)	582, 1889
Bsh1236I	CGCG	1 cut(s)	1318
BshFI	GGCC	5 cut(s)	219, 467, 779, 1392, 1407
BsiHKAI	GWGCWC	3 cut(s)	760, 865, 1384
BsiSI	CCGG	2 cut(s)	434, 780
BslI	CCNNNNNNNGG	3 cut(s)	134, 424, 1553
BsmAI	GTCTC	2 cut(s)	156, 1870
BsnI	GGCC	5 cut(s)	219, 467, 779, 1392, 1407
Bsp1286I	GDGCHC	3 cut(s)	760, 865, 1384
Bsp13I	TCCGGA	1 cut(s)	433
Bsp1407I	TGTACA	2 cut(s)	316, 876
Bsp143I	GATC	9 cut(s)	389, 538, 1096, 1110, 1421, 1459, 1524, 1632, 1834
Bsp19I	CCATGG	1 cut(s)	1114
BspACI	CCGC	3 cut(s)	799, 1318, 1408
BspANI	GGCC	5 cut(s)	219, 467, 779, 1392, 1407
BspEI	TCCGGA	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	1318
BspHI	TCATGA	1 cut(s)	1731
BspLI	GGNNCC	1 cut(s)	1449
BspMAI	CTGCAG	1 cut(s)	71
BspMI	ACCTGC	1 cut(s)	956
BspPI	GGATC	5 cut(s)	384, 546, 1104, 1105, 1429
BsrDI	GCAATG	5 cut(s)	258, 452, 699, 983, 1797
BsrFI	RCCGGY	1 cut(s)	779
BsrGI	TGTACA	2 cut(s)	316, 876
BssAI	RCCGGY	1 cut(s)	779
BssECI	CCNNGG	4 cut(s)	214, 1114, 1573, 1760
BssMI	GATC	9 cut(s)	389, 538, 1096, 1110, 1421, 1459, 1524, 1632, 1834
BssT1I	CCWWGG	3 cut(s)	214, 1114, 1573
Bst2UI	CCWGG	2 cut(s)	605, 1761
Bst4CI	ACNGT	3 cut(s)	517, 748, 1655
BstAUI	TGTACA	2 cut(s)	316, 876
BstBAI	YACGTR	2 cut(s)	1084, 1666
BstC8I	GCNNGC	6 cut(s)	103, 236, 829, 1226, 1582, 1717
BstDEI	CTNAG	2 cut(s)	273, 1370
BstDSI	CCRYGG	1 cut(s)	1114
BstF5I	GGATG	6 cut(s)	637, 850, 1036, 1246, 1294, 1326
BstFNI	CGCG	1 cut(s)	1318
BstHHI	GCGC	2 cut(s)	417, 1081
BstKTI	GATC	9 cut(s)	392, 541, 1099, 1113, 1424, 1462, 1527, 1635, 1837
BstMAI	GTCTC	2 cut(s)	156, 1870
BstMBI	GATC	9 cut(s)	389, 538, 1096, 1110, 1421, 1459, 1524, 1632, 1834
BstMWI	GCNNNNNNNGC	7 cut(s)	244, 647, 689, 764, 776, 962, 1543
BstNI	CCWGG	2 cut(s)	605, 1761
BstNSI	RCATGY	3 cut(s)	1153, 1537, 1864
BstSCI	CCNGG	2 cut(s)	603, 1759
BstSFI	CTRYAG	2 cut(s)	67, 1548
BstUI	CGCG	1 cut(s)	1318
BstV1I	GCAGC	8 cut(s)	53, 81, 583, 754, 878, 1215, 1699, 1792
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuRI	GGCC	5 cut(s)	219, 467, 779, 1392, 1407
BtgI	CCRYGG	1 cut(s)	1114
BtsCI	GGATG	6 cut(s)	637, 850, 1036, 1246, 1294, 1326
BtsI	GCAGTG	1 cut(s)	998
BtsIMutI	CAGTG	3 cut(s)	522, 998, 1660
BveI	ACCTGC	1 cut(s)	956
Cac8I	GCNNGC	6 cut(s)	103, 236, 829, 1226, 1582, 1717
CciI	TCATGA	1 cut(s)	1731
CfoI	GCGC	2 cut(s)	417, 1081
Cfr10I	RCCGGY	1 cut(s)	779
Cfr13I	GGNCC	3 cut(s)	218, 436, 1405
CsiI	ACCWGGT	1 cut(s)	603
Csp6I	GTAC	7 cut(s)	18, 317, 586, 877, 1064, 1139, 1501
CspCI	CAANNNNNGTGG	2 cut(s)	1636, 1671
CviQI	GTAC	7 cut(s)	18, 317, 586, 877, 1064, 1139, 1501
DdeI	CTNAG	2 cut(s)	273, 1370
DpnI	GATC	9 cut(s)	391, 540, 1098, 1112, 1423, 1461, 1526, 1634, 1836
DpnII	GATC	9 cut(s)	389, 538, 1096, 1110, 1421, 1459, 1524, 1632, 1834
DraIII	CACNNNGTG	1 cut(s)	607
EaeI	YGGCCR	1 cut(s)	777
Eco130I	CCWWGG	3 cut(s)	214, 1114, 1573
Eco147I	AGGCCT	2 cut(s)	467, 1392
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	553
EcoRII	CCWGG	2 cut(s)	603, 1759
EcoT14I	CCWWGG	3 cut(s)	214, 1114, 1573
ErhI	CCWWGG	3 cut(s)	214, 1114, 1573
FalI	AAGNNNNNCTT	2 cut(s)	1229, 1261
FbaI	TGATCA	1 cut(s)	1632
Fnu4HI	GCNGC	9 cut(s)	67, 70, 597, 768, 892, 1229, 1408, 1713, 1806
FokI	GGATG	6 cut(s)	644, 857, 1043, 1253, 1301, 1333
Fsp4HI	GCNGC	9 cut(s)	67, 70, 597, 768, 892, 1229, 1408, 1713, 1806
FspAI	RTGCGCAY	1 cut(s)	1080
FspBI	CTAG	4 cut(s)	117, 1607, 1640, 1910
FspI	TGCGCA	1 cut(s)	1080
GlaI	GCGC	2 cut(s)	416, 1080
GluI	GCNGC	9 cut(s)	67, 70, 597, 768, 892, 1229, 1408, 1713, 1806
GsaI	CCCAGC	2 cut(s)	1236, 1500
HaeIII	GGCC	5 cut(s)	219, 467, 779, 1392, 1407
HapII	CCGG	2 cut(s)	434, 780
HhaI	GCGC	2 cut(s)	417, 1081
Hin6I	GCGC	2 cut(s)	415, 1079
HinP1I	GCGC	2 cut(s)	415, 1079
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	4 cut(s)	1588, 1643, 1878, 1898
HpaII	CCGG	2 cut(s)	434, 780
HphI	GGTGA	5 cut(s)	85, 329, 754, 794, 1622
Hpy166II	GTNNAC	2 cut(s)	1147, 1613
Hpy188I	TCNGA	5 cut(s)	359, 379, 1027, 1828, 1848
Hpy188III	TCNNGA	5 cut(s)	434, 1009, 1723, 1732, 1895
Hpy8I	GTNNAC	2 cut(s)	1147, 1613
HpyAV	CCTTC	3 cut(s)	310, 457, 1366
HpyCH4III	ACNGT	3 cut(s)	517, 748, 1655
HpyCH4IV	ACGT	2 cut(s)	1083, 1665
HpyF10VI	GCNNNNNNNGC	7 cut(s)	244, 647, 689, 764, 776, 962, 1543
HpyF3I	CTNAG	2 cut(s)	273, 1370
HpySE526I	ACGT	2 cut(s)	1083, 1665
HspAI	GCGC	2 cut(s)	415, 1079
Kpn2I	TCCGGA	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	1632
Kzo9I	GATC	9 cut(s)	389, 538, 1096, 1110, 1421, 1459, 1524, 1632, 1834
LmnI	GCTCC	2 cut(s)	243, 1447
Lsp1109I	GCAGC	8 cut(s)	53, 81, 583, 754, 878, 1215, 1699, 1792
LweI	GCATC	5 cut(s)	892, 985, 1279, 1286, 1728
MabI	ACCWGGT	1 cut(s)	603
MaeI	CTAG	4 cut(s)	117, 1607, 1640, 1910
MaeII	ACGT	2 cut(s)	1083, 1665
MaeIII	GTNAC	5 cut(s)	31, 80, 742, 1323, 1351
MalI	GATC	9 cut(s)	391, 540, 1098, 1112, 1423, 1461, 1526, 1634, 1836
MboI	GATC	9 cut(s)	389, 538, 1096, 1110, 1421, 1459, 1524, 1632, 1834
MboII	GAAGA	1 cut(s)	1671
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	3 cut(s)	760, 865, 1384
MluCI	AATT	7 cut(s)	53, 192, 521, 532, 553, 726, 1597
MlyI	GAGTC	1 cut(s)	1872
MmeI	TCCRAC	2 cut(s)	459, 1833
MroI	TCCGGA	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	1310
MseI	TTAA	5 cut(s)	177, 669, 918, 1203, 1266
MslI	CAYNNNNRTG	4 cut(s)	900, 1287, 1538, 1865
MspA1I	CMGCKG	1 cut(s)	1553
MspI	CCGG	2 cut(s)	434, 780
MspR9I	CCNGG	2 cut(s)	605, 1761
MvaI	CCWGG	2 cut(s)	605, 1761
MvnI	CGCG	1 cut(s)	1318
MwoI	GCNNNNNNNGC	7 cut(s)	244, 647, 689, 764, 776, 962, 1543
NcoI	CCATGG	1 cut(s)	1114
NdeII	GATC	9 cut(s)	389, 538, 1096, 1110, 1421, 1459, 1524, 1632, 1834
NlaIV	GGNNCC	1 cut(s)	1449
NmeAIII	GCCGAG	1 cut(s)	954
NmuCI	GTSAC	2 cut(s)	80, 742
NsbI	TGCGCA	1 cut(s)	1080
NspI	RCATGY	3 cut(s)	1153, 1537, 1864
PagI	TCATGA	1 cut(s)	1731
PceI	AGGCCT	2 cut(s)	467, 1392
PciI	ACATGT	1 cut(s)	1149
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PdmI	GAANNNNTTC	1 cut(s)	1310
PfeI	GAWTC	3 cut(s)	1588, 1643, 1898
PkrI	GCNGC	9 cut(s)	68, 71, 598, 769, 893, 1230, 1409, 1714, 1807
PleI	GAGTC	1 cut(s)	1872
PpsI	GAGTC	1 cut(s)	1872
Ppu21I	YACGTR	2 cut(s)	1084, 1666
PscI	ACATGT	1 cut(s)	1149
PshBI	ATTAAT	1 cut(s)	1266
PsiI	TTATAA	1 cut(s)	62
Psp6I	CCWGG	2 cut(s)	603, 1759
PspFI	CCCAGC	2 cut(s)	1232, 1496
PspGI	CCWGG	2 cut(s)	603, 1759
PspN4I	GGNNCC	1 cut(s)	1449
PspPI	GGNCC	3 cut(s)	218, 436, 1405
PstI	CTGCAG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	1553
RsaI	GTAC	7 cut(s)	19, 318, 587, 878, 1065, 1140, 1502
RsaNI	GTAC	7 cut(s)	18, 317, 586, 877, 1064, 1139, 1501
RseI	CAYNNNNRTG	4 cut(s)	900, 1287, 1538, 1865
SaqAI	TTAA	5 cut(s)	177, 669, 918, 1203, 1266
SatI	GCNGC	9 cut(s)	67, 70, 597, 768, 892, 1229, 1408, 1713, 1806
Sau3AI	GATC	9 cut(s)	389, 538, 1096, 1110, 1421, 1459, 1524, 1632, 1834
Sau96I	GGNCC	3 cut(s)	218, 436, 1405
SchI	GAGTC	1 cut(s)	1872
ScrFI	CCNGG	2 cut(s)	605, 1761
SduI	GDGCHC	3 cut(s)	760, 865, 1384
SexAI	ACCWGGT	1 cut(s)	603
SfaNI	GCATC	5 cut(s)	892, 985, 1279, 1286, 1728
SfcI	CTRYAG	2 cut(s)	67, 1548
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	4 cut(s)	900, 1287, 1538, 1865
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
SpeI	ACTAGT	1 cut(s)	116
Sse9I	AATT	7 cut(s)	53, 192, 521, 532, 553, 726, 1597
SseBI	AGGCCT	2 cut(s)	467, 1392
SsiI	CCGC	3 cut(s)	799, 1318, 1408
SspMI	CTAG	4 cut(s)	117, 1607, 1640, 1910
StuI	AGGCCT	2 cut(s)	467, 1392
StyD4I	CCNGG	2 cut(s)	603, 1759
StyI	CCWWGG	3 cut(s)	214, 1114, 1573
TaaI	ACNGT	3 cut(s)	517, 748, 1655
TaiI	ACGT	2 cut(s)	1086, 1668
TaqI	TCGA	5 cut(s)	735, 907, 1058, 1527, 1797
TasI	AATT	7 cut(s)	53, 192, 521, 532, 553, 726, 1597
TatI	WGTACW	4 cut(s)	17, 316, 876, 1138
TauI	GCSGC	1 cut(s)	1410
TfiI	GAWTC	3 cut(s)	1588, 1643, 1898
Tru1I	TTAA	5 cut(s)	177, 669, 918, 1203, 1266
Tru9I	TTAA	5 cut(s)	177, 669, 918, 1203, 1266
TscAI	CASTG	3 cut(s)	522, 1005, 1660
TseFI	GTSAC	2 cut(s)	80, 742
TseI	GCWGC	8 cut(s)	66, 69, 596, 767, 891, 1228, 1712, 1805
Tsp45I	GTSAC	2 cut(s)	80, 742
TspDTI	ATGAA	7 cut(s)	710, 797, 896, 1348, 1362, 1442, 1748
TspRI	CASTG	3 cut(s)	522, 1005, 1660
VpaK11BI	GGWCC	1 cut(s)	436
VspI	ATTAAT	1 cut(s)	1266
XapI	RAATTY	5 cut(s)	192, 521, 532, 553, 1597
XceI	RCATGY	3 cut(s)	1153, 1537, 1864
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1767
XmnI	GAANNNNTTC	1 cut(s)	1310
XspI	CTAG	4 cut(s)	117, 1607, 1640, 1910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.