Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015255

Physical Location & Seq

Genomic Coordinates Forward (+)

12847001 .. 12848291

Gene Structure 1291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G160900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCGCACAAATGGTATTGCTCCCGACAAGCACACCTTCCCTTTGCTTCTCAAGGGCTTTTCCAAGTTGGAAAACGAAAACCCATTTCAGTTTTATGCTCATATAGTCAAGTTTGGATTGAATTTTGACCAATTTGTGAGGAATTCATTGATATATGCATTTTCTGGTTGCGGATACTTAGAGTCTGCCAACCATGTGTTTGATGAAAGTAGAGTACAATGGGATGCCTATGTTGGTAGCGCTCTTCTGGATATGTACATGAAGTGCGGCTACCATAAAGATGCTTGTAAAGTTTTTAATGAAATGCCAGTTAAAAATGTAGTTTGTTGGAGTGCCTTGATAGCAGGTTATACACAATGTAGCAAATATAAAGATGCATTGCTTGCCTTGAAATATATGCTTTCAGAGAGCATCAGACCTAACCAATCTACATTCACGAGTGTACTTACTTCTTGTGCACACCTAGGGGCGCTAGATAGAGGAAAGTCGGTTCATGGTTACATATGTAGGCATAAAATTCCGGTGAACTCGTTACTTGGAACATCATTAGTAGATATGTATGCAAAATGTGGTTGCATTGATGTGGCTCTATCTGTTTTTGGAAAGTTGCCCACCAAGGATGTCTTTACTTGGACTGCCATGATTAGTGGGTTGGCAATGGACGGGGATGCTTTGAAAGCTTTGAACTTCTTCTCACATATGTTACAGAGTGGGGTTCTACCTAATGAAGTAACCTTCATTGGTGTTCTTAGTGCTTGTTCTCATGGAGGTCTTGTAGATGAGGGACGTAAGCTTTTTGGTTCAATGAAGCAGGATTTTCATTTGGAGCCTACTGTAGATCACTACGGTTGTATGGTTGATTTACTTGGTAGGGTTGGGTACTTGCTAGGGGAACTTGTAGGAAATCATCTGATCAAGCTGCAGTCAAATCACAGTGGACGATACATACTTTTGTCAAACTTGTACTCGACATGGAAAAAATGGGAAATAGATGCTGGCATAAGGAAGCTCATGAAAGGGAAACGTGTTGAAAAGATAACAGGGCATAGCTGGATAGAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

353

Amino Acids

39.43

Weight (kDa)

8.64

Isoelectric Point (pI)

30.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50270
fragaria_vesca	FvH4_4g13480
malus_domestica	MD04G1013900.v1.1
prunus_persica	Prupe.1G160900_v2.0.a1
pyrus_communis	pycom04g01080
rosa_chinensis	RchiOBHm_Chr4g0414091
rosa_laevigata	RLG00000008178
rosa_multiflora	Rmu_sc0003264.1_g000012 Rmu_sc0006428.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358020
rosa_rugosa	Rorug04G0125300
rosa_samantha	Rh4AG184000 Rh4BG183500 Rh4CG195900 Rh4DG179400
rosa_wichuraiana	Rw4G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	335
AciI	CCGC	2 cut(s)	171, 267
AcsI	RAATTY	3 cut(s)	121, 142, 516
AfaI	GTAC	5 cut(s)	216, 257, 444, 881, 965
AfeI	AGCGCT	1 cut(s)	241
AflIII	ACRYGT	1 cut(s)	1024
AgsI	TTSAA	6 cut(s)	121, 391, 676, 685, 804, 1031
AloI	GAACNNNNNNTCC	2 cut(s)	474, 506
AluBI	AGCT	5 cut(s)	680, 793, 919, 1009, 1050
AluI	AGCT	5 cut(s)	680, 793, 919, 1009, 1050
Alw21I	GWGCWC	1 cut(s)	460
Alw44I	GTGCAC	1 cut(s)	456
Aor51HI	AGCGCT	1 cut(s)	241
ApaLI	GTGCAC	1 cut(s)	456
ApeKI	GCWGC	1 cut(s)	919
ApoI	RAATTY	3 cut(s)	121, 142, 516
Asp700I	GAANNNNTTC	1 cut(s)	689
AspA2I	CCTAGG	1 cut(s)	463
AspLEI	GCGC	3 cut(s)	6, 242, 472
AsuHPI	GGTGA	1 cut(s)	535
AvrII	CCTAGG	1 cut(s)	463
BaeGI	GKGCMC	1 cut(s)	460
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
BauI	CACGAG	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	906
BciVI	GTATCC	1 cut(s)	167
BclI	TGATCA	1 cut(s)	912
BfaI	CTAG	3 cut(s)	464, 473, 887
BfmI	CTRYAG	2 cut(s)	834, 920
BfoI	RGCGCY	2 cut(s)	243, 473
BfuAI	ACCTGC	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	167
BisI	GCNGC	2 cut(s)	268, 920
BlnI	CCTAGG	1 cut(s)	463
BlsI	GCNGC	2 cut(s)	269, 921
BmiI	GGNNCC	1 cut(s)	828
BmsI	GCATC	6 cut(s)	214, 271, 364, 420, 658, 982
BpuEI	CTTGAG	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	463, 615
BsaWI	WCCGGW	1 cut(s)	520
BsaXI	ACNNNNNCTCC	2 cut(s)	759, 789
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	2 cut(s)	377, 663
BseDI	CCNNGG	2 cut(s)	463, 615
BseGI	GGATG	3 cut(s)	229, 625, 673
BseMI	GCAATG	2 cut(s)	377, 663
BseNI	ACTGG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	906
BsiHKAI	GWGCWC	1 cut(s)	460
BsiSI	CCGG	1 cut(s)	521
BslFI	GGGAC	1 cut(s)	798
BsmFI	GGGAC	1 cut(s)	798
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	838, 912
BspACI	CCGC	2 cut(s)	171, 267
BspHI	TCATGA	1 cut(s)	1011
BspLI	GGNNCC	1 cut(s)	828
BspMAI	CTGCAG	1 cut(s)	924
BspMI	ACCTGC	1 cut(s)	335
BspQI	GCTCTTC	1 cut(s)	249
BsrDI	GCAATG	2 cut(s)	377, 663
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	463, 615
BssMI	GATC	2 cut(s)	838, 912
BssSI	CACGAG	1 cut(s)	436
BssT1I	CCWWGG	2 cut(s)	463, 615
Bst2BI	CACGAG	1 cut(s)	436
Bst4CI	ACNGT	3 cut(s)	835, 848, 935
Bst6I	CTCTTC	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstAUI	TGTACA	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	384, 997
BstDEI	CTNAG	2 cut(s)	178, 749
BstF5I	GGATG	3 cut(s)	229, 625, 673
BstH2I	RGCGCY	2 cut(s)	243, 473
BstHHI	GCGC	3 cut(s)	6, 242, 472
BstKTI	GATC	2 cut(s)	841, 915
BstMBI	GATC	2 cut(s)	838, 912
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 383, 677
BstSFI	CTRYAG	2 cut(s)	834, 920
BstSLI	GKGCMC	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	906
BsuI	GTATCC	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	229, 625, 673
BtsIMutI	CAGTG	1 cut(s)	940
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	2 cut(s)	384, 997
CciI	TCATGA	1 cut(s)	1011
CfoI	GCGC	3 cut(s)	6, 242, 472
Csp6I	GTAC	5 cut(s)	215, 256, 443, 880, 964
CviAII	CATG	7 cut(s)	194, 259, 494, 640, 764, 972, 1012
CviJI	RGCY	9 cut(s)	57, 270, 587, 680, 793, 829, 919, 1009, 1050
CviKI_1	RGCY	9 cut(s)	57, 270, 587, 680, 793, 829, 919, 1009, 1050
CviQI	GTAC	5 cut(s)	215, 256, 443, 880, 964
DdeI	CTNAG	2 cut(s)	178, 749
DpnI	GATC	2 cut(s)	840, 914
DpnII	GATC	2 cut(s)	838, 912
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	463, 615
Eco47III	AGCGCT	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	142
EcoT14I	CCWWGG	2 cut(s)	463, 615
EcoT22I	ATGCAT	2 cut(s)	160, 379
ErhI	CCWWGG	2 cut(s)	463, 615
FaeI	CATG	7 cut(s)	197, 262, 497, 643, 767, 975, 1015
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 608, 640
FaqI	GGGAC	1 cut(s)	798
FatI	CATG	7 cut(s)	193, 258, 493, 639, 763, 971, 1011
FauNDI	CATATG	2 cut(s)	503, 699
FbaI	TGATCA	1 cut(s)	912
Fnu4HI	GCNGC	2 cut(s)	268, 920
FokI	GGATG	3 cut(s)	236, 632, 680
Fsp4HI	GCNGC	2 cut(s)	268, 920
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	3 cut(s)	464, 473, 887
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	3 cut(s)	5, 241, 471
GluI	GCNGC	2 cut(s)	268, 920
HaeII	RGCGCY	2 cut(s)	243, 473
HapII	CCGG	1 cut(s)	521
HhaI	GCGC	3 cut(s)	6, 242, 472
Hin1II	CATG	7 cut(s)	197, 262, 497, 643, 767, 975, 1015
Hin6I	GCGC	3 cut(s)	4, 240, 470
HinP1I	GCGC	3 cut(s)	4, 240, 470
HindIII	AAGCTT	2 cut(s)	678, 791
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	1 cut(s)	521
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	4 cut(s)	443, 458, 526, 938
Hpy188I	TCNGA	3 cut(s)	406, 416, 912
Hpy188III	TCNNGA	4 cut(s)	23, 248, 436, 1012
Hpy8I	GTNNAC	4 cut(s)	443, 458, 526, 938
HpyAV	CCTTC	2 cut(s)	46, 745
HpyCH4III	ACNGT	3 cut(s)	835, 848, 935
HpyCH4IV	ACGT	2 cut(s)	787, 1024
HpyCH4V	TGCA	6 cut(s)	158, 377, 458, 563, 576, 922
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 383, 677
HpyF3I	CTNAG	2 cut(s)	178, 749
HpySE526I	ACGT	2 cut(s)	787, 1024
Hsp92II	CATG	7 cut(s)	197, 262, 497, 643, 767, 975, 1015
HspAI	GCGC	3 cut(s)	4, 240, 470
Ksp22I	TGATCA	1 cut(s)	912
Kzo9I	GATC	2 cut(s)	838, 912
LguI	GCTCTTC	1 cut(s)	249
LmnI	GCTCC	2 cut(s)	25, 826
LpnPI	CCDG	9 cut(s)	150, 233, 321, 330, 534, 797, 981, 1026, 1036
Lsp1109I	GCAGC	1 cut(s)	906
LweI	GCATC	6 cut(s)	214, 271, 364, 420, 658, 982
MaeI	CTAG	3 cut(s)	464, 473, 887
MaeII	ACGT	2 cut(s)	787, 1024
MaeIII	GTNAC	4 cut(s)	497, 531, 702, 730
MalI	GATC	2 cut(s)	840, 914
MboI	GATC	2 cut(s)	838, 912
MboII	GAAGA	2 cut(s)	236, 682
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	4 cut(s)	121, 131, 142, 516
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	2 cut(s)	48, 308
MnlI	CCTC	4 cut(s)	132, 473, 761, 775
Mph1103I	ATGCAT	2 cut(s)	160, 379
MroXI	GAANNNNTTC	1 cut(s)	689
MseI	TTAA	2 cut(s)	297, 312
MslI	CAYNNNNRTG	2 cut(s)	279, 581
MspI	CCGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	3 cut(s)	341, 383, 677
NdeI	CATATG	2 cut(s)	503, 699
NdeII	GATC	2 cut(s)	838, 912
NlaIII	CATG	7 cut(s)	197, 262, 497, 643, 767, 975, 1015
NlaIV	GGNNCC	1 cut(s)	828
NsbI	TGCGCA	1 cut(s)	5
NsiI	ATGCAT	2 cut(s)	160, 379
PagI	TCATGA	1 cut(s)	1011
PciSI	GCTCTTC	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	689
PkrI	GCNGC	2 cut(s)	269, 921
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	828
PstI	CTGCAG	1 cut(s)	924
RsaI	GTAC	5 cut(s)	216, 257, 444, 881, 965
RsaNI	GTAC	5 cut(s)	215, 256, 443, 880, 964
RseI	CAYNNNNRTG	2 cut(s)	279, 581
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	297, 312
SatI	GCNGC	2 cut(s)	268, 920
Sau3AI	GATC	2 cut(s)	838, 912
SchI	GAGTC	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	6 cut(s)	214, 271, 364, 420, 658, 982
SfcI	CTRYAG	2 cut(s)	834, 920
SmiMI	CAYNNNNRTG	2 cut(s)	279, 581
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	4 cut(s)	121, 131, 142, 516
SsiI	CCGC	2 cut(s)	171, 267
SspMI	CTAG	3 cut(s)	464, 473, 887
StyI	CCWWGG	2 cut(s)	463, 615
TaaI	ACNGT	3 cut(s)	835, 848, 935
TaiI	ACGT	2 cut(s)	790, 1027
TaqI	TCGA	1 cut(s)	968
TasI	AATT	4 cut(s)	121, 131, 142, 516
TatI	WGTACW	4 cut(s)	214, 255, 442, 963
TauI	GCSGC	1 cut(s)	270
Tru1I	TTAA	2 cut(s)	297, 312
Tru9I	TTAA	2 cut(s)	297, 312
TscAI	CASTG	1 cut(s)	940
TseI	GCWGC	1 cut(s)	919
TspRI	CASTG	1 cut(s)	940
VneI	GTGCAC	1 cut(s)	456
XapI	RAATTY	3 cut(s)	121, 142, 516
XmaJI	CCTAGG	1 cut(s)	463
XmnI	GAANNNNTTC	1 cut(s)	689
XspI	CTAG	3 cut(s)	464, 473, 887
Zsp2I	ATGCAT	2 cut(s)	160, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.