Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0015255

Physical Location & Seq

Genomic Coordinates Reverse (-)

45757285 .. 45761451

Gene Structure 4167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG184000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGGTAGCACCATATTGTCTCTGTGCCACAAAGACACAACCTTTAACCATTTGAAGCAAATTCACTCCCTCCTCATTACCCTTGGCCCATCACAAAACGATTGCTTGCTCCCCAAGCTTCTCACTTCCATTGCACCCACCTCTAATCCTACCCATCTTGCCTACGCTTCTTTCCTCATTGACCATGTACAAGCACCCACCTCCACTCACCTATGGAACTCCATCATCAGAGCATTTTCTACTACTTCAGAGCCTCACAGGTCCCTAGTTTCGTATTCAACAATGCGCCGAAACGGGGTCGTTCCGGACCAGCACACCTTCCCATTGCTACTCAAGGCCTTTCCCAAGTTGAAAAACAAAGACCCATTTCAGTTTTATGCTCATACAGTGAAATTTGGATTGAATTTGGATCAGTTTGTGGGGAATTCGTTTATATCTGTGTTGTCTGGTTGTGGGTACTTGGAGGCCGCACACCAGGTGTTTGTTGAAAGTACTGAGAAGGATGTGATTGCTTGGACGGCGTTGGTTGATGGGTATGTAAAGAATGGTCATGCTTTGGAAGCAATGAAGTGTTTTGTGGAGATGAGATTGGTTGGAATTAGGGTCGATGAGGTGACTGTTGTTAGTGCTCTTTGTGCTGCTGGAATGGCCGGTGATGTTTGGTTCGGGCGGTGCGTTCATGGGTTCTATGTGGAAGCAGGCAGAGTAAAATGGGATATTAAGCAAGCTCACGCATGGGAAGTATTCGACATGGAAAGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

254

Amino Acids

28.32

Weight (kDa)

7.21

Isoelectric Point (pI)

26.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	69 - 114	9.1e-06	PPR repeat family
PPR_2	PF13041	167 - 207	4.4e-08	PPR repeat family
PPR	PF01535	171 - 199	2.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50270
fragaria_vesca	FvH4_4g13480
malus_domestica	MD04G1013900.v1.1
prunus_persica	Prupe.1G160900_v2.0.a1
pyrus_communis	pycom04g01080
rosa_chinensis	RchiOBHm_Chr4g0414091
rosa_laevigata	RLG00000008178
rosa_multiflora	Rmu_sc0003264.1_g000012 Rmu_sc0006428.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358020
rosa_rugosa	Rorug04G0125300
rosa_samantha	Rh4AG184000 Rh4BG183500 Rh4CG195900 Rh4DG179400
rosa_wichuraiana	Rw4G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	2 cut(s)	468, 670
AclWI	GGATC	1 cut(s)	417
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	4 cut(s)	60, 392, 403, 424
AcuI	CTGAAG	1 cut(s)	231
AdeI	CACNNNGTG	1 cut(s)	478
AfaI	GTAC	3 cut(s)	189, 458, 493
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	5 cut(s)	55, 279, 352, 403, 488
AjnI	CCWGG	1 cut(s)	474
AluBI	AGCT	2 cut(s)	118, 728
AluI	AGCT	2 cut(s)	118, 728
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	417
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	4 cut(s)	85, 336, 465, 648
ApeKI	GCWGC	1 cut(s)	638
ApoI	RAATTY	4 cut(s)	60, 392, 403, 424
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	3 cut(s)	86, 261, 307
AsuHPI	GGTGA	3 cut(s)	200, 625, 665
AvaII	GGWCC	2 cut(s)	261, 307
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	4 cut(s)	97, 162, 230, 524
BceAI	ACGGC	1 cut(s)	534
BciT130I	CCWGG	1 cut(s)	476
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	2 cut(s)	468, 639
BlsI	GCNGC	2 cut(s)	469, 640
BmcAI	AGTACT	1 cut(s)	493
Bme1390I	CCNGG	1 cut(s)	476
Bme18I	GGWCC	2 cut(s)	261, 307
BmgT120I	GGNCC	3 cut(s)	86, 261, 307
BmiI	GGNNCC	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse118I	RCCGGY	1 cut(s)	650
Bse3DI	GCAATG	3 cut(s)	129, 323, 570
BseAI	TCCGGA	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	476
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	3 cut(s)	129, 323, 570
BseMII	CTCAG	1 cut(s)	486
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	625
BshFI	GGCC	4 cut(s)	87, 338, 467, 650
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	2 cut(s)	305, 651
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	4 cut(s)	87, 338, 467, 650
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp13I	TCCGGA	1 cut(s)	304
Bsp1407I	TGTACA	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	409
BspACI	CCGC	2 cut(s)	468, 670
BspANI	GGCC	4 cut(s)	87, 338, 467, 650
BspCNI	CTCAG	1 cut(s)	487
BspEI	TCCGGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	417
BsrDI	GCAATG	3 cut(s)	129, 323, 570
BsrFI	RCCGGY	1 cut(s)	650
BsrGI	TGTACA	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	650
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	409
BssT1I	CCWWGG	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	2 cut(s)	388, 619
BstAUI	TGTACA	1 cut(s)	187
BstC8I	GCNNGC	3 cut(s)	107, 700, 726
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	508
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	1 cut(s)	412
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 518, 560, 635, 647
BstNI	CCWGG	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	625
BsuRI	GGCC	4 cut(s)	87, 338, 467, 650
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	3 cut(s)	107, 700, 726
CfoI	GCGC	1 cut(s)	288
Cfr10I	RCCGGY	1 cut(s)	650
Cfr13I	GGNCC	3 cut(s)	86, 261, 307
CsiI	ACCWGGT	1 cut(s)	474
Csp6I	GTAC	3 cut(s)	188, 457, 492
CviAII	CATG	5 cut(s)	185, 551, 680, 735, 751
CviJI	RGCY	7 cut(s)	87, 118, 253, 338, 467, 650, 728
CviKI_1	RGCY	7 cut(s)	87, 118, 253, 338, 467, 650, 728
CviQI	GTAC	3 cut(s)	188, 457, 492
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
DraIII	CACNNNGTG	1 cut(s)	478
EaeI	YGGCCR	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	338
Eco47I	GGWCC	2 cut(s)	261, 307
Eco57I	CTGAAG	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	261
EcoRI	GAATTC	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	5 cut(s)	188, 554, 683, 738, 754
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	5 cut(s)	184, 550, 679, 734, 750
Fnu4HI	GCNGC	2 cut(s)	468, 639
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	2 cut(s)	468, 639
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	2 cut(s)	468, 639
HaeIII	GGCC	4 cut(s)	87, 338, 467, 650
HapII	CCGG	2 cut(s)	305, 651
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	5 cut(s)	188, 554, 683, 738, 754
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	116
HpaII	CCGG	2 cut(s)	305, 651
HphI	GGTGA	3 cut(s)	200, 625, 665
Hpy188I	TCNGA	2 cut(s)	230, 250
Hpy188III	TCNNGA	1 cut(s)	305
HpyAV	CCTTC	2 cut(s)	328, 493
HpyCH4III	ACNGT	2 cut(s)	388, 619
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 518, 560, 635, 647
HpyF3I	CTNAG	1 cut(s)	495
Hsp92II	CATG	5 cut(s)	188, 554, 683, 738, 754
HspAI	GCGC	1 cut(s)	286
Kpn2I	TCCGGA	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	9 cut(s)	244, 318, 323, 432, 461, 488, 627, 664, 684
Lsp1109I	GCAGC	1 cut(s)	625
MabI	ACCWGGT	1 cut(s)	474
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	631
MluCI	AATT	5 cut(s)	60, 392, 403, 424, 597
MmeI	TCCRAC	1 cut(s)	574
MnlI	CCTC	8 cut(s)	80, 83, 151, 185, 211, 264, 457, 604
MroI	TCCGGA	1 cut(s)	304
MseI	TTAA	2 cut(s)	45, 720
MspI	CCGG	2 cut(s)	305, 651
MspR9I	CCNGG	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	5 cut(s)	115, 518, 560, 635, 647
NdeII	GATC	1 cut(s)	409
NlaIII	CATG	5 cut(s)	188, 554, 683, 738, 754
NlaIV	GGNNCC	1 cut(s)	263
NmuCI	GTSAC	1 cut(s)	613
PceI	AGGCCT	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	672
PkrI	GCNGC	2 cut(s)	469, 640
PpuMI	RGGWCCY	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	263
PspPI	GGNCC	3 cut(s)	86, 261, 307
PspPPI	RGGWCCY	1 cut(s)	261
RsaI	GTAC	3 cut(s)	189, 458, 493
RsaNI	GTAC	3 cut(s)	188, 457, 492
SaqAI	TTAA	2 cut(s)	45, 720
SatI	GCNGC	2 cut(s)	468, 639
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	3 cut(s)	86, 261, 307
ScaI	AGTACT	1 cut(s)	493
ScrFI	CCNGG	1 cut(s)	476
SduI	GDGCHC	1 cut(s)	631
SexAI	ACCWGGT	1 cut(s)	474
SinI	GGWCC	2 cut(s)	261, 307
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	5 cut(s)	60, 392, 403, 424, 597
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	2 cut(s)	468, 670
SspMI	CTAG	1 cut(s)	266
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	474
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	2 cut(s)	388, 619
TaqI	TCGA	2 cut(s)	606, 747
TasI	AATT	5 cut(s)	60, 392, 403, 424, 597
TatI	WGTACW	2 cut(s)	187, 491
TauI	GCSGC	1 cut(s)	470
Tru1I	TTAA	2 cut(s)	45, 720
Tru9I	TTAA	2 cut(s)	45, 720
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	1 cut(s)	638
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	2 cut(s)	581, 668
TspRI	CASTG	1 cut(s)	393
VpaK11BI	GGWCC	2 cut(s)	261, 307
XapI	RAATTY	4 cut(s)	60, 392, 403, 424
XspI	CTAG	1 cut(s)	266
ZrmI	AGTACT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.