Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0015255

Physical Location & Seq

Genomic Coordinates Forward (+)

1577852 .. 1579702

Gene Structure 1851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1013900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1851 bp

ATGTCGGGAACCAGCATTAGCAGCAAGATCAACCCTTTCCATGGCGACGACGGCATCTTCATCCTCCTCTCTCTGTTTCACAAACACAAGACCCTTCACCATTTGAAGCAAATTCACTCCGTCCTCGTCACCGCTGGCCTCTCACACAACTCTTTCTTCCTCGACCAACTTGTGACTACCATTGCAGCATCTCAGCCTACCCATCTCGCCTACGCTTCGCTACTTGTCGACCGCATCGAAGCACCCGTCACTCACCTATGGAACTCCATCATCAGAGCATTCTCTGCGAGTTCAGAGCCTCAGAGGTCACTCCTTTTTTACGCAAAAATGCGCACGACTGGCGTTGCTCCGGACAAGCACACCTTCCCTTTGCTTCTCAAGTCATTTTCCAAGTTGAAAAACGAAAACCCATTTCAGTTTTACGCTCAAATAGTTAAGTTTGGATTGAGTTCTGACCAATTTGTGAAGAATTCGTTGATATCTGTGTTTTCTGGTTGTGGGTGCTTAGAGTCTGCCTGCCAGGTGTTTGATGAAAGTACCCAGAAGGATGTGATTTCTTGGACTGCATTGATTGACGGGTATGTCAAAAATGATCGGGCTGTGGAAGCAATGAAGTGTTTTATGGAGATGAGATTGATGGGAATTAGAGTCGATGAGGTGACGATTGTTAGTGTTCTTTGTGCTGCCGGAATGGCTGGCGATCTTTGGTTCGGACGCTGGCTTCATGGGTTCTATGTGGAAACAGGTAGAGTACAATGGGACGTCTACGTTGGTAGCGCTCTACTGGATATGTACATGAAGTGCGGCTACCATGACGATGCTCGTAAAGTTTTTAAAGAATTGCCGAGTAAAAATGTAGTTTCTTGGAGTGCTTTGATAGCAGGTTATGTGCAGTGTAAGAGATACAAAGATGCATTGCTAGTTTTGAAATACATGCATTCAGAACATGTTAAACCTAACCAATTTACATTGACGAGTGTGCTTACCTCTTGTGCTGACTTAGGGGCACTGGATCAAGGTAGGTCGGTTCATGGCTATATATATAGGCATAAGATACAAGTGAACTCATTACTTGGAACGGCATTAGTAGATATGTACACGAAATGTGGGTGCCTTGGTGAAGGTCTATCCATTTTCCGAAAGTTGCCAACCAAGGACGTCTTTGCTTGGACCGCCGTAATTAGTGGTTTGGCAATGGGTGGTAATGCTTTAGATGCTTTGAACTTCTTCTCGCGTATGTTACAGAGTGCGGTTCTGCCTAATGAAGTTACATTCATTGCTGTTCTTAGTGCTTGTTCTCATGGAGGTCTTGTAGACGAGGGATGTAAGCTTTTTGGATCGATGAAGGAGGTTTTTCATTTGGAGCCTAATGTAGATCACTATGGTTGCATGGTTGATTTACTCGGAAGGGCTGGGTACTTGGAGGAAGCACGAAAAGTTATCGAGGACATGCCAATGGTGCCTTCAGCTGGTGTATGGGGAGCTCTGCTCGGTGCCTGTATGATTCATAAGAATTTCGAGCTAGGAGAACTCGTTGGAAATCATCTGATCAAGCTACAGTCCGATCATAGCGGAAGATATGTACTTCTGGCAAACTTGTATTCGACATGGAATAAATGGGAAGCAGCTTCTGGCATAAGGAAGCTCATGAAAGGGAAACGCGTCGAGAAGATAACGGGGTGTAGCTGGATCGAAGTGAATGGTGCAGTTTTCGAGTTTACTGCATTCGACGAATCGCATTCTGAATCGGATGATATATATGTGATGTTGGACAACATGTTCTTCCAACTGAAACGGGCTGGTTATGTTCCAGATGCTAACCTATTTGGGTTTGACATTGATGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

617

Amino Acids

68.57

Weight (kDa)

6.64

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	182 - 226	4.1e-09	PPR repeat family
PPR	PF01535	185 - 215	3.9e-07	PPR repeat
PPR_2	PF13041	284 - 332	4.4e-10	PPR repeat family
PPR_2	PF13041	385 - 433	1.4e-07	PPR repeat family
E_motif	PF20431	503 - 565	3.9e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50270
fragaria_vesca	FvH4_4g13480
malus_domestica	MD04G1013900.v1.1
prunus_persica	Prupe.1G160900_v2.0.a1
pyrus_communis	pycom04g01080
rosa_chinensis	RchiOBHm_Chr4g0414091
rosa_laevigata	RLG00000008178
rosa_multiflora	Rmu_sc0003264.1_g000012 Rmu_sc0006428.1_g000004
rosa_roxburghii	Rroxscaffold_5G00358020
rosa_rugosa	Rorug04G0125300
rosa_samantha	Rh4AG184000 Rh4BG183500 Rh4CG195900 Rh4DG179400
rosa_wichuraiana	Rw4G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	581
AatII	GACGTC	2 cut(s)	765, 1161
Acc16I	TGCGCA	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	872
AccB1I	GGYRCC	3 cut(s)	1110, 1459, 1493
AccI	GTMKAC	3 cut(s)	228, 765, 1314
AccII	CGCG	2 cut(s)	1234, 1662
AccIII	TCCGGA	1 cut(s)	349
AciI	CCGC	6 cut(s)	132, 232, 804, 1173, 1250, 1572
AclWI	GGATC	3 cut(s)	1020, 1345, 1697
AcsI	RAATTY	3 cut(s)	111, 469, 1513
AcuI	CTGAAG	1 cut(s)	1449
AcyI	GRCGYC	2 cut(s)	762, 1158
AfaI	GTAC	6 cut(s)	538, 753, 794, 1097, 1418, 1584
AfeI	AGCGCT	1 cut(s)	778
AfiI	CCNNNNNNNGG	2 cut(s)	41, 1469
AflIII	ACRYGT	3 cut(s)	946, 1660, 1776
AgsI	TTSAA	4 cut(s)	106, 397, 928, 1222
AjnI	CCWGG	1 cut(s)	519
AjuI	GAANNNNNNNTTGG	2 cut(s)	1447, 1479
AloI	GAACNNNNNNTCC	2 cut(s)	1763, 1795
AluBI	AGCT	8 cut(s)	1330, 1469, 1484, 1522, 1555, 1628, 1645, 1686
AluI	AGCT	8 cut(s)	1330, 1469, 1484, 1522, 1555, 1628, 1645, 1686
Alw21I	GWGCWC	1 cut(s)	1486
AlwI	GGATC	3 cut(s)	1020, 1345, 1697
AlwNI	CAGNNNCTG	1 cut(s)	1631
Aor13HI	TCCGGA	1 cut(s)	349
Aor51HI	AGCGCT	1 cut(s)	778
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	4 cut(s)	21, 185, 683, 1625
ApoI	RAATTY	3 cut(s)	111, 469, 1513
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
Asp700I	GAANNNNTTC	1 cut(s)	1226
AspLEI	GCGC	2 cut(s)	333, 779
AspS9I	GGNCC	1 cut(s)	1170
AsuHPI	GGTGA	5 cut(s)	89, 121, 245, 670, 1130
AvaII	GGWCC	1 cut(s)	1170
BaeGI	GKGCMC	1 cut(s)	1009
BanI	GGYRCC	3 cut(s)	1110, 1459, 1493
BanII	GRGCYC	1 cut(s)	1486
BarI	GAAGNNNNNNTAC	2 cut(s)	791, 823
Bbv12I	GWGCWC	1 cut(s)	1486
BbvI	GCAGC	4 cut(s)	33, 197, 670, 1637
BccI	CCATC	3 cut(s)	210, 275, 631
BceAI	ACGGC	3 cut(s)	67, 1095, 1160
BcgI	CGANNNNNNTGC	2 cut(s)	1703, 1737
BciT130I	CCWGG	1 cut(s)	521
BclI	TGATCA	1 cut(s)	1548
BfaI	CTAG	2 cut(s)	920, 1523
BfmI	CTRYAG	1 cut(s)	1556
BfoI	RGCGCY	1 cut(s)	780
BfuAI	ACCTGC	1 cut(s)	872
BglI	GCCNNNNNGGC	1 cut(s)	692
BisI	GCNGC	5 cut(s)	22, 186, 684, 805, 1626
BlsI	GCNGC	5 cut(s)	23, 187, 685, 806, 1627
Bme1390I	CCNGG	1 cut(s)	521
Bme18I	GGWCC	1 cut(s)	1170
BmgT120I	GGNCC	1 cut(s)	1170
BmiI	GGNNCC	5 cut(s)	10, 1112, 1365, 1461, 1495
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	7 cut(s)	63, 197, 243, 808, 901, 1204, 1804
BplI	GAGNNNNNCTC	2 cut(s)	1473, 1505
BpuEI	CTTGAG	1 cut(s)	362
Bsa29I	ATCGAT	1 cut(s)	1340
BsaHI	GRCGYC	2 cut(s)	762, 1158
BsaJI	CCNNGG	3 cut(s)	40, 1114, 1152
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	4 cut(s)	1296, 1326, 1518, 1548
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 1469
Bse1I	ACTGG	3 cut(s)	343, 789, 1014
Bse3DI	GCAATG	5 cut(s)	180, 615, 914, 1200, 1275
BseAI	TCCGGA	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	521
BseCI	ATCGAT	1 cut(s)	1340
BseDI	CCNNGG	3 cut(s)	40, 1114, 1152
BseGI	GGATG	4 cut(s)	60, 553, 1328, 1756
BseLI	CCNNNNNNNGG	2 cut(s)	41, 1469
BseMI	GCAATG	5 cut(s)	180, 615, 914, 1200, 1275
BseMII	CTCAG	2 cut(s)	206, 314
BseNI	ACTGG	3 cut(s)	343, 789, 1014
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	1009
BseXI	GCAGC	4 cut(s)	33, 197, 670, 1637
BseYI	CCCAGC	1 cut(s)	1412
BsgI	GTGCAG	2 cut(s)	911, 1725
Bsh1236I	CGCG	2 cut(s)	1234, 1662
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	138
BshNI	GGYRCC	3 cut(s)	1110, 1459, 1493
BshVI	ATCGAT	1 cut(s)	1340
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	1486
BsiSI	CCGG	2 cut(s)	350, 687
BslFI	GGGAC	1 cut(s)	773
BslI	CCNNNNNNNGG	2 cut(s)	41, 1469
BsmFI	GGGAC	1 cut(s)	773
BsmI	GAATGC	4 cut(s)	278, 937, 1724, 1738
BsnI	GGCC	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	1009, 1486
Bsp13I	TCCGGA	1 cut(s)	349
Bsp1407I	TGTACA	2 cut(s)	792, 1095
Bsp143I	GATC	9 cut(s)	27, 592, 700, 1012, 1337, 1375, 1548, 1564, 1689
Bsp19I	CCATGG	1 cut(s)	40
BspACI	CCGC	6 cut(s)	132, 232, 804, 1173, 1250, 1572
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	2 cut(s)	205, 313
BspDI	ATCGAT	1 cut(s)	1340
BspEI	TCCGGA	1 cut(s)	349
BspFNI	CGCG	2 cut(s)	1234, 1662
BspHI	TCATGA	1 cut(s)	1647
BspLI	GGNNCC	5 cut(s)	10, 1112, 1365, 1461, 1495
BspMI	ACCTGC	1 cut(s)	872
BspPI	GGATC	3 cut(s)	1020, 1345, 1697
BspT107I	GGYRCC	3 cut(s)	1110, 1459, 1493
BsrDI	GCAATG	5 cut(s)	180, 615, 914, 1200, 1275
BsrGI	TGTACA	2 cut(s)	792, 1095
BsrI	ACTGG	3 cut(s)	343, 789, 1014
BssECI	CCNNGG	3 cut(s)	40, 1114, 1152
BssMI	GATC	9 cut(s)	27, 592, 700, 1012, 1337, 1375, 1548, 1564, 1689
BssNI	GRCGYC	2 cut(s)	762, 1158
BssT1I	CCWWGG	3 cut(s)	40, 1114, 1152
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	1 cut(s)	1560
BstACI	GRCGYC	2 cut(s)	762, 1158
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstAUI	TGTACA	2 cut(s)	792, 1095
BstC8I	GCNNGC	4 cut(s)	136, 517, 697, 719
BstDEI	CTNAG	5 cut(s)	192, 300, 505, 1000, 1286
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	4 cut(s)	60, 553, 1328, 1756
BstFNI	CGCG	2 cut(s)	1234, 1662
BstH2I	RGCGCY	1 cut(s)	780
BstHHI	GCGC	2 cut(s)	333, 779
BstKTI	GATC	9 cut(s)	30, 595, 703, 1015, 1340, 1378, 1551, 1567, 1692
BstMBI	GATC	9 cut(s)	27, 592, 700, 1012, 1337, 1375, 1548, 1564, 1689
BstMCI	CGRYCG	1 cut(s)	232
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	4 cut(s)	937, 950, 1453, 1780
BstSCI	CCNGG	1 cut(s)	519
BstSFI	CTRYAG	1 cut(s)	1556
BstSLI	GKGCMC	1 cut(s)	1009
BstUI	CGCG	2 cut(s)	1234, 1662
BstV1I	GCAGC	4 cut(s)	33, 197, 670, 1637
Bsu15I	ATCGAT	1 cut(s)	1340
BsuRI	GGCC	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	1340
BtgI	CCRYGG	1 cut(s)	40
BtsCI	GGATG	4 cut(s)	60, 553, 1328, 1756
BtsI	GCAGTG	1 cut(s)	899
BtsIMutI	CAGTG	2 cut(s)	899, 1007
BveI	ACCTGC	1 cut(s)	872
Cac8I	GCNNGC	4 cut(s)	136, 517, 697, 719
CaiI	CAGNNNCTG	1 cut(s)	1631
CciI	TCATGA	1 cut(s)	1647
CfoI	GCGC	2 cut(s)	333, 779
Cfr13I	GGNCC	1 cut(s)	1170
ClaI	ATCGAT	1 cut(s)	1340
CseI	GACGC	2 cut(s)	723, 1651
Csp6I	GTAC	6 cut(s)	537, 752, 793, 1096, 1417, 1583
CviQI	GTAC	6 cut(s)	537, 752, 793, 1096, 1417, 1583
DdeI	CTNAG	5 cut(s)	192, 300, 505, 1000, 1286
DpnI	GATC	9 cut(s)	29, 594, 702, 1014, 1339, 1377, 1550, 1566, 1691
DpnII	GATC	9 cut(s)	27, 592, 700, 1012, 1337, 1375, 1548, 1564, 1689
DraI	TTTAAA	1 cut(s)	835
DrdI	GACNNNNNNGTC	1 cut(s)	581
DseDI	GACNNNNNNGTC	1 cut(s)	581
Ecl136II	GAGCTC	1 cut(s)	1484
Eco130I	CCWWGG	3 cut(s)	40, 1114, 1152
Eco24I	GRGCYC	1 cut(s)	1486
Eco32I	GATATC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	1170
Eco47III	AGCGCT	1 cut(s)	778
Eco53kI	GAGCTC	1 cut(s)	1484
Eco57I	CTGAAG	1 cut(s)	1449
EcoICRI	GAGCTC	1 cut(s)	1484
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	519
EcoRV	GATATC	1 cut(s)	480
EcoT14I	CCWWGG	3 cut(s)	40, 1114, 1152
EcoT22I	ATGCAT	2 cut(s)	916, 939
EcoT38I	GRGCYC	1 cut(s)	1486
ErhI	CCWWGG	3 cut(s)	40, 1114, 1152
FalI	AAGNNNNNCTT	4 cut(s)	347, 379, 1145, 1177
FaqI	GGGAC	1 cut(s)	773
FbaI	TGATCA	1 cut(s)	1548
FblI	GTMKAC	3 cut(s)	228, 765, 1314
Fnu4HI	GCNGC	5 cut(s)	22, 186, 684, 805, 1626
FokI	GGATG	4 cut(s)	47, 560, 1335, 1763
FriOI	GRGCYC	1 cut(s)	1486
Fsp4HI	GCNGC	5 cut(s)	22, 186, 684, 805, 1626
FspAI	RTGCGCAY	1 cut(s)	332
FspBI	CTAG	2 cut(s)	920, 1523
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	2 cut(s)	332, 778
GluI	GCNGC	5 cut(s)	22, 186, 684, 805, 1626
GsaI	CCCAGC	1 cut(s)	1416
HaeII	RGCGCY	1 cut(s)	780
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	2 cut(s)	350, 687
HgaI	GACGC	2 cut(s)	723, 1651
HhaI	GCGC	2 cut(s)	333, 779
Hin1I	GRCGYC	2 cut(s)	762, 1158
Hin6I	GCGC	2 cut(s)	331, 777
HinP1I	GCGC	2 cut(s)	331, 777
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	1328
HinfI	GANTC	5 cut(s)	509, 648, 1504, 1733, 1745
HpaII	CCGG	2 cut(s)	350, 687
HphI	GGTGA	5 cut(s)	89, 121, 245, 670, 1130
Hpy166II	GTNNAC	6 cut(s)	229, 766, 1063, 1098, 1315, 1719
Hpy188III	TCNNGA	5 cut(s)	6, 350, 1648, 1666, 1811
Hpy8I	GTNNAC	6 cut(s)	229, 766, 1063, 1098, 1315, 1719
Hpy99I	CGWCG	4 cut(s)	50, 53, 1667, 1733
HpyAV	CCTTC	7 cut(s)	104, 373, 538, 1115, 1339, 1401, 1473
HpyCH4III	ACNGT	1 cut(s)	1560
HpyCH4IV	ACGT	3 cut(s)	762, 768, 1158
HpyCH4V	TGCA	8 cut(s)	185, 566, 892, 914, 937, 1389, 1706, 1724
HpyF3I	CTNAG	5 cut(s)	192, 300, 505, 1000, 1286
HpySE526I	ACGT	3 cut(s)	762, 768, 1158
Hsp92I	GRCGYC	2 cut(s)	762, 1158
HspAI	GCGC	2 cut(s)	331, 777
Kpn2I	TCCGGA	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	1548
Kzo9I	GATC	9 cut(s)	27, 592, 700, 1012, 1337, 1375, 1548, 1564, 1689
LmnI	GCTCC	3 cut(s)	352, 1363, 1481
Lsp1109I	GCAGC	4 cut(s)	33, 197, 670, 1637
LweI	GCATC	7 cut(s)	63, 197, 243, 808, 901, 1204, 1804
MaeI	CTAG	2 cut(s)	920, 1523
MaeII	ACGT	3 cut(s)	762, 768, 1158
MaeIII	GTNAC	7 cut(s)	127, 172, 247, 306, 658, 1239, 1267
MalI	GATC	9 cut(s)	29, 594, 702, 1014, 1339, 1377, 1550, 1566, 1691
MboI	GATC	9 cut(s)	27, 592, 700, 1012, 1337, 1375, 1548, 1564, 1689
MboII	GAAGA	7 cut(s)	49, 148, 478, 1219, 1587, 1681, 1774
MhlI	GDGCHC	2 cut(s)	1009, 1486
MluCI	AATT	8 cut(s)	111, 458, 469, 642, 839, 962, 1179, 1513
MluI	ACGCGT	1 cut(s)	1660
MlyI	GAGTC	2 cut(s)	518, 657
MmeI	TCCRAC	3 cut(s)	1516, 1749, 1810
Mph1103I	ATGCAT	2 cut(s)	916, 939
MroI	TCCGGA	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	1226
MseI	TTAA	3 cut(s)	435, 834, 951
MslI	CAYNNNNRTG	2 cut(s)	816, 1454
MspA1I	CMGCKG	2 cut(s)	134, 1469
MspI	CCGG	2 cut(s)	350, 687
MspR9I	CCNGG	1 cut(s)	521
Mva1269I	GAATGC	4 cut(s)	278, 937, 1724, 1738
MvaI	CCWGG	1 cut(s)	521
MvnI	CGCG	2 cut(s)	1234, 1662
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	9 cut(s)	27, 592, 700, 1012, 1337, 1375, 1548, 1564, 1689
NlaIV	GGNNCC	5 cut(s)	10, 1112, 1365, 1461, 1495
NmeAIII	GCCGAG	1 cut(s)	870
NmuCI	GTSAC	5 cut(s)	127, 172, 247, 306, 658
NsbI	TGCGCA	1 cut(s)	332
NsiI	ATGCAT	2 cut(s)	916, 939
NspI	RCATGY	4 cut(s)	937, 950, 1453, 1780
PagI	TCATGA	1 cut(s)	1647
PciI	ACATGT	2 cut(s)	946, 1776
PcsI	WCGNNNNNNNCGW	2 cut(s)	234, 243
PctI	GAATGC	4 cut(s)	278, 937, 1724, 1738
PdmI	GAANNNNTTC	1 cut(s)	1226
PfeI	GAWTC	3 cut(s)	1504, 1733, 1745
PkrI	GCNGC	5 cut(s)	23, 187, 685, 806, 1627
PleI	GAGTC	2 cut(s)	517, 656
PpsI	GAGTC	2 cut(s)	517, 656
PscI	ACATGT	2 cut(s)	946, 1776
Psp124BI	GAGCTC	1 cut(s)	1486
Psp6I	CCWGG	1 cut(s)	519
PspFI	CCCAGC	1 cut(s)	1412
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	5 cut(s)	10, 1112, 1365, 1461, 1495
PspPI	GGNCC	1 cut(s)	1170
PstNI	CAGNNNCTG	1 cut(s)	1631
PvuII	CAGCTG	1 cut(s)	1469
RsaI	GTAC	6 cut(s)	538, 753, 794, 1097, 1418, 1584
RsaNI	GTAC	6 cut(s)	537, 752, 793, 1096, 1417, 1583
RseI	CAYNNNNRTG	2 cut(s)	816, 1454
SacI	GAGCTC	1 cut(s)	1486
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	435, 834, 951
SatI	GCNGC	5 cut(s)	22, 186, 684, 805, 1626
Sau3AI	GATC	9 cut(s)	27, 592, 700, 1012, 1337, 1375, 1548, 1564, 1689
Sau96I	GGNCC	1 cut(s)	1170
SchI	GAGTC	2 cut(s)	518, 657
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	2 cut(s)	1009, 1486
SfaNI	GCATC	7 cut(s)	63, 197, 243, 808, 901, 1204, 1804
SfcI	CTRYAG	1 cut(s)	1556
SinI	GGWCC	1 cut(s)	1170
SmiMI	CAYNNNNRTG	2 cut(s)	816, 1454
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	8 cut(s)	111, 458, 469, 642, 839, 962, 1179, 1513
SsiI	CCGC	6 cut(s)	132, 232, 804, 1173, 1250, 1572
SspMI	CTAG	2 cut(s)	920, 1523
SstI	GAGCTC	1 cut(s)	1486
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	3 cut(s)	40, 1114, 1152
TaaI	ACNGT	1 cut(s)	1560
TaiI	ACGT	3 cut(s)	765, 771, 1161
TasI	AATT	8 cut(s)	111, 458, 469, 642, 839, 962, 1179, 1513
TatI	WGTACW	4 cut(s)	751, 792, 1095, 1582
TauI	GCSGC	1 cut(s)	807
TfiI	GAWTC	3 cut(s)	1504, 1733, 1745
Tru1I	TTAA	3 cut(s)	435, 834, 951
Tru9I	TTAA	3 cut(s)	435, 834, 951
TscAI	CASTG	2 cut(s)	899, 1014
TseFI	GTSAC	5 cut(s)	127, 172, 247, 306, 658
TseI	GCWGC	4 cut(s)	21, 185, 683, 1625
Tsp45I	GTSAC	5 cut(s)	127, 172, 247, 306, 658
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	2 cut(s)	899, 1014
VpaK11BI	GGWCC	1 cut(s)	1170
XapI	RAATTY	3 cut(s)	111, 469, 1513
XceI	RCATGY	4 cut(s)	937, 950, 1453, 1780
XmiI	GTMKAC	3 cut(s)	228, 765, 1314
XmnI	GAANNNNTTC	1 cut(s)	1226
XspI	CTAG	2 cut(s)	920, 1523
ZraI	GACGTC	2 cut(s)	763, 1159
Zsp2I	ATGCAT	2 cut(s)	916, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.