RLG00000008178

Pentatricopeptide repeat domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
26667485 .. 26669590
2106 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008178

Sequence Viewer

Length: 1791 bp
ATGGGTAGCACCATCTTGTCTCTGTGCCACAAAGACACAACCTTTAACCATTTGAAGCAAATTCACTCCCTCCTCGTTACCCTTGGCCCATCACAAAACGATTGCTTGCTCCCCAAGCTTCTCACTTCCATTGCACCCACCTCTAAGCCTACCCATCTTGCCTATGCTTCCTTCCTCATTGACCATGTACAAGCACCCAACCCCACCCACGTATGGAACTCCATCATCAGAGCATTTTCTACCACTTCAGAGCCTCACAGGTCCCTTGTTTCGTATTCAACAATGCGCCGAAACGGGGTCGTTCCGGACCAGCACACTTTCCCATTGCTACTCAAGGCCTTTCCCAAGTTGAAAAACAAAGACCCATTTCAGTTTTATGCTCATACGGTGAAATTTGGATTGAATTTGGATCAGTTTGTGGGGAATTCGTTTATATCTGTGTTGTCTGGTTGTGGGTACTTGGAGGCTGCGCATCAGGTGTTTGTTGAAAGTACTCAGAAGGATGTGATTGGTTGGACGGCGTTGGTTGATGGGTATGTTAAGAATGGTCATGCTTTGGAAGCAATGAAGTGTTTTGTGGAGATGGGATTGGTTGGAATTAGTGTCGATGAGGTGACTGTTGTTAGTGCTCTTTGTGCTGCTGGAAATGCCGGTGATGTTTGGTTCGGGCGGTGCGTTCATGGGTTCTATGTGGAAGCAGGCAGAGTAAAATGGGATGTCTATGTTGGTAGTGCTCTTGTTGATATGTACATGAAGTGTGGATGCCATGACGATGCTCGAAAAGTGTTTAATGCCATGCCGAGTAAAAATGTGGTATCTTGGACTGCGTTGATAGCAGGTTATGTGCAATGTGAGAAATATAAAGATGCACTGCTTGTCTTGAAATGTATGGTTTCGGAGGATGTCAAGCCTAACCAATCTACATTGTCTAGTGTACTTACCTCTTGTGCGCACGTAGGGGCATTGGATCAAGGAAAGTTGATCCATGGCTATCTATATAGGCATAGAGTACAAGTGAACATGTTGCTTGGAACAGGGTTAGTAGATATGTACGCAAAATGTGGGTGCATTGTTAAGGCTCTATCGGTTTTCAGCAAGCTGCCCAGCAAGGATGTCTTTACATGGACTGCTATGATTAATGGGTTGGCATCACATGGGGATGCTTTAGGCGCTTTGAACTTACTCTCACGGATGTTACAGAATGGGGTTCTACCCAATGAAGTAACCTTCATGGGTGTTCTTAGTGCGTGTGCTCATAGAGGCCTTGTAGATGAGGGACGCAAGGCTTTTGGATCAATGAAGCAAGTTTTCCATTTGGAGCCGAATGTAGATCACTACGGCTGTATGGTTGATTTACTTGGTAGGGCTGGGTACTTGGAGGAAGCCAGACAAATGATTGAGGACATGCCAATGTTGCCTACAGCTGGTATATGGGGAACTTTCCTTAGTGCGTGTGTGATTCACAAGAATTTTGAGCTAGGTGAACTTGCAGGAAGTCATTTGATCAAGCTAGATTCCAATCACAGTGGAAGATACGTGCTTCTGGCAAACTTGTATTCAACTTGGAAAAAATGGAAAGTAGCTGCTGGCATCAGGAAGCTCATGAAAGGGAAAGGCGTTGAAAAAATACCAGGGTATAGCTGGATAGAAGTCAATGGTGCAATGTTTGAGTTCGCTGCGTTTGACAAATCACATTCCGAAACAGATCATATATATCTGATGTTGGAAAACATGCTTGTGCAGTTGAGAGTCTCTGGTTATGTTCCCGACGCTAACCTACTAGCATTTTGA

Protein Analysis

597

Amino Acids

65.63

Weight (kDa)

8.22

Isoelectric Point (pI)

24.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 167 - 207 1.2e-06 PPR repeat family
PPR_2 PF13041 269 - 318 3e-09 PPR repeat family
PPR_2 PF13041 370 - 419 1.9e-10 PPR repeat family
PPR PF01535 373 - 403 3.6e-06 PPR repeat
E_motif PF20431 488 - 550 3.9e-18 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G50270
fragaria_vesca FvH4_4g13480
malus_domestica MD04G1013900.v1.1
prunus_persica Prupe.1G160900_v2.0.a1
pyrus_communis pycom04g01080
rosa_chinensis RchiOBHm_Chr4g0414091
rosa_laevigata RLG00000008178
rosa_multiflora Rmu_sc0003264.1_g000012 Rmu_sc0006428.1_g000004
rosa_roxburghii Rroxscaffold_5G00358020
rosa_rugosa Rorug04G0125300
rosa_samantha Rh4AG184000 Rh4BG183500 Rh4CG195900 Rh4DG179400
rosa_wichuraiana Rw4G015660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 471, 951
Acc36I ACCTGC 1 cut(s) 827
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 1 cut(s) 670
AclWI GGATC 4 cut(s) 417, 975, 976, 1300
AcsI RAATTY 5 cut(s) 60, 392, 403, 424, 1468
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 8 cut(s) 189, 458, 493, 749, 936, 1011, 1052, 1373
AfiI CCNNNNNNNGG 3 cut(s) 213, 295, 1424
AflIII ACRYGT 1 cut(s) 1020
AgsI TTSAA 9 cut(s) 55, 279, 352, 403, 488, 883, 1177, 1560, 1622
AjnI CCWGG 1 cut(s) 1630
AluBI AGCT 8 cut(s) 118, 1099, 1424, 1477, 1510, 1583, 1600, 1641
AluI AGCT 8 cut(s) 118, 1099, 1424, 1477, 1510, 1583, 1600, 1641
Alw21I GWGCWC 3 cut(s) 631, 736, 1255
Alw26I GTCTC 2 cut(s) 24, 1756
AlwI GGATC 4 cut(s) 417, 975, 976, 1300
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 3 cut(s) 85, 336, 1261
ApeKI GCWGC 5 cut(s) 467, 638, 1099, 1583, 1676
ApoI RAATTY 5 cut(s) 60, 392, 403, 424, 1468
AseI ATTAAT 1 cut(s) 1137
AspLEI GCGC 4 cut(s) 288, 472, 952, 1172
AspS9I GGNCC 3 cut(s) 86, 261, 307
AsuHPI GGTGA 4 cut(s) 400, 625, 665, 1493
AvaII GGWCC 2 cut(s) 261, 307
Bbv12I GWGCWC 3 cut(s) 631, 736, 1255
BbvI GCAGC 5 cut(s) 454, 625, 1086, 1570, 1663
BccI CCATC 6 cut(s) 20, 97, 162, 230, 524, 577
BceAI ACGGC 2 cut(s) 534, 1354
BciT130I CCWGG 1 cut(s) 1632
BclI TGATCA 1 cut(s) 1503
BcoDI GTCTC 2 cut(s) 24, 1756
BfaI CTAG 4 cut(s) 930, 1478, 1511, 1781
BfmI CTRYAG 1 cut(s) 1419
BfoI RGCGCY 1 cut(s) 1173
BfuAI ACCTGC 1 cut(s) 827
BisI GCNGC 5 cut(s) 468, 639, 1100, 1584, 1677
BlsI GCNGC 5 cut(s) 469, 640, 1101, 1585, 1678
BmcAI AGTACT 1 cut(s) 493
Bme1390I CCNGG 1 cut(s) 1632
Bme18I GGWCC 2 cut(s) 261, 307
BmgT120I GGNCC 3 cut(s) 86, 261, 307
BmiI GGNNCC 2 cut(s) 263, 1320
BmrFI CCNGG 1 cut(s) 1632
BmsI GCATC 7 cut(s) 481, 752, 763, 856, 1150, 1157, 1599
BpuEI CTTGAG 1 cut(s) 317
BsaAI YACGTR 3 cut(s) 211, 955, 1537
BsaBI GATNNNNATC 1 cut(s) 1518
BsaJI CCNNGG 3 cut(s) 82, 985, 1631
BsaWI WCCGGW 1 cut(s) 304
Bsc4I CCNNNNNNNGG 3 cut(s) 213, 295, 1424
Bse118I RCCGGY 1 cut(s) 650
Bse3DI GCAATG 5 cut(s) 129, 323, 570, 854, 1668
Bse8I GATNNNNATC 1 cut(s) 1518
BseAI TCCGGA 1 cut(s) 304
BseBI CCWGG 1 cut(s) 1632
BseDI CCNNGG 3 cut(s) 82, 985, 1631
BseGI GGATG 7 cut(s) 508, 721, 767, 907, 1117, 1165, 1197
BseJI GATNNNNATC 1 cut(s) 1518
BseLI CCNNNNNNNGG 3 cut(s) 213, 295, 1424
BseMI GCAATG 5 cut(s) 129, 323, 570, 854, 1668
BseMII CTCAG 1 cut(s) 509
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 5 cut(s) 454, 625, 1086, 1570, 1663
BseYI CCCAGC 2 cut(s) 1103, 1367
BsgI GTGCAG 1 cut(s) 1760
BshFI GGCC 3 cut(s) 87, 338, 1263
BsiHKAI GWGCWC 3 cut(s) 631, 736, 1255
BsiSI CCGG 2 cut(s) 305, 651
BslFI GGGAC 2 cut(s) 247, 1290
BslI CCNNNNNNNGG 3 cut(s) 213, 295, 1424
BsmAI GTCTC 2 cut(s) 24, 1756
BsmFI GGGAC 2 cut(s) 247, 1290
BsnI GGCC 3 cut(s) 87, 338, 1263
Bsp1286I GDGCHC 3 cut(s) 631, 736, 1255
Bsp13I TCCGGA 1 cut(s) 304
Bsp1407I TGTACA 2 cut(s) 187, 747
Bsp143I GATC 7 cut(s) 409, 967, 981, 1292, 1330, 1503, 1705
Bsp19I CCATGG 1 cut(s) 985
BspACI CCGC 1 cut(s) 670
BspANI GGCC 3 cut(s) 87, 338, 1263
BspCNI CTCAG 1 cut(s) 508
BspEI TCCGGA 1 cut(s) 304
BspHI TCATGA 1 cut(s) 1602
BspLI GGNNCC 2 cut(s) 263, 1320
BspMI ACCTGC 1 cut(s) 827
BspPI GGATC 4 cut(s) 417, 975, 976, 1300
BsrDI GCAATG 5 cut(s) 129, 323, 570, 854, 1668
BsrFI RCCGGY 1 cut(s) 650
BsrGI TGTACA 2 cut(s) 187, 747
BssAI RCCGGY 1 cut(s) 650
BssECI CCNNGG 3 cut(s) 82, 985, 1631
BssMI GATC 7 cut(s) 409, 967, 981, 1292, 1330, 1503, 1705
BssT1I CCWWGG 2 cut(s) 82, 985
Bst2UI CCWGG 1 cut(s) 1632
Bst4CI ACNGT 3 cut(s) 388, 619, 1526
BstAUI TGTACA 2 cut(s) 187, 747
BstBAI YACGTR 3 cut(s) 211, 955, 1537
BstC8I GCNNGC 4 cut(s) 107, 700, 1097, 1588
BstDEI CTNAG 4 cut(s) 144, 495, 1241, 1445
BstDSI CCRYGG 1 cut(s) 985
BstF5I GGATG 7 cut(s) 508, 721, 767, 907, 1117, 1165, 1197
BstH2I RGCGCY 1 cut(s) 1173
BstHHI GCGC 4 cut(s) 288, 472, 952, 1172
BstKTI GATC 7 cut(s) 412, 970, 984, 1295, 1333, 1506, 1708
BstMAI GTCTC 2 cut(s) 24, 1756
BstMBI GATC 7 cut(s) 409, 967, 981, 1292, 1330, 1503, 1705
BstMWI GCNNNNNNNGC 7 cut(s) 115, 560, 635, 647, 833, 1169, 1414
BstNI CCWGG 1 cut(s) 1632
BstNSI RCATGY 3 cut(s) 1024, 1408, 1735
BstSCI CCNGG 1 cut(s) 1630
BstSFI CTRYAG 1 cut(s) 1419
BstV1I GCAGC 5 cut(s) 454, 625, 1086, 1570, 1663
BsuRI GGCC 3 cut(s) 87, 338, 1263
BtgI CCRYGG 1 cut(s) 985
BtsCI GGATG 7 cut(s) 508, 721, 767, 907, 1117, 1165, 1197
BtsI GCAGTG 1 cut(s) 869
BtsIMutI CAGTG 2 cut(s) 869, 1531
BveI ACCTGC 1 cut(s) 827
Cac8I GCNNGC 4 cut(s) 107, 700, 1097, 1588
CciI TCATGA 1 cut(s) 1602
CfoI GCGC 4 cut(s) 288, 472, 952, 1172
Cfr10I RCCGGY 1 cut(s) 650
Cfr13I GGNCC 3 cut(s) 86, 261, 307
CseI GACGC 2 cut(s) 1287, 1778
Csp6I GTAC 8 cut(s) 188, 457, 492, 748, 935, 1010, 1051, 1372
CspCI CAANNNNNGTGG 2 cut(s) 1507, 1542
CviQI GTAC 8 cut(s) 188, 457, 492, 748, 935, 1010, 1051, 1372
DdeI CTNAG 4 cut(s) 144, 495, 1241, 1445
DpnI GATC 7 cut(s) 411, 969, 983, 1294, 1332, 1505, 1707
DpnII GATC 7 cut(s) 409, 967, 981, 1292, 1330, 1503, 1705
Eco130I CCWWGG 2 cut(s) 82, 985
Eco147I AGGCCT 2 cut(s) 338, 1263
Eco47I GGWCC 2 cut(s) 261, 307
Eco57I CTGAAG 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 1630
EcoT14I CCWWGG 2 cut(s) 82, 985
ErhI CCWWGG 2 cut(s) 82, 985
FalI AAGNNNNNCTT 2 cut(s) 1100, 1132
FaqI GGGAC 2 cut(s) 247, 1290
FbaI TGATCA 1 cut(s) 1503
Fnu4HI GCNGC 5 cut(s) 468, 639, 1100, 1584, 1677
FokI GGATG 7 cut(s) 515, 728, 774, 914, 1124, 1172, 1204
Fsp4HI GCNGC 5 cut(s) 468, 639, 1100, 1584, 1677
FspAI RTGCGCAY 1 cut(s) 951
FspBI CTAG 4 cut(s) 930, 1478, 1511, 1781
FspI TGCGCA 2 cut(s) 471, 951
GlaI GCGC 4 cut(s) 287, 471, 951, 1171
GluI GCNGC 5 cut(s) 468, 639, 1100, 1584, 1677
GsaI CCCAGC 2 cut(s) 1107, 1371
HaeII RGCGCY 1 cut(s) 1173
HaeIII GGCC 3 cut(s) 87, 338, 1263
HapII CCGG 2 cut(s) 305, 651
HgaI GACGC 2 cut(s) 1287, 1778
HhaI GCGC 4 cut(s) 288, 472, 952, 1172
Hin6I GCGC 4 cut(s) 286, 470, 950, 1170
HinP1I GCGC 4 cut(s) 286, 470, 950, 1170
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 3 cut(s) 1459, 1514, 1749
HpaII CCGG 2 cut(s) 305, 651
HphI GGTGA 4 cut(s) 400, 625, 665, 1493
Hpy166II GTNNAC 3 cut(s) 935, 1018, 1484
Hpy188I TCNGA 6 cut(s) 230, 250, 498, 898, 1699, 1719
Hpy188III TCNNGA 5 cut(s) 305, 880, 1594, 1603, 1766
Hpy8I GTNNAC 3 cut(s) 935, 1018, 1484
Hpy99I CGWCG 1 cut(s) 1772
HpyAV CCTTC 3 cut(s) 181, 493, 1237
HpyCH4III ACNGT 3 cut(s) 388, 619, 1526
HpyCH4IV ACGT 3 cut(s) 210, 954, 1536
HpyCH4V TGCA 7 cut(s) 134, 847, 869, 1068, 1490, 1661, 1741
HpyF10VI GCNNNNNNNGC 7 cut(s) 115, 560, 635, 647, 833, 1169, 1414
HpyF3I CTNAG 4 cut(s) 144, 495, 1241, 1445
HpySE526I ACGT 3 cut(s) 210, 954, 1536
HspAI GCGC 4 cut(s) 286, 470, 950, 1170
Kpn2I TCCGGA 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 1503
Kzo9I GATC 7 cut(s) 409, 967, 981, 1292, 1330, 1503, 1705
LmnI GCTCC 2 cut(s) 114, 1318
Lsp1109I GCAGC 5 cut(s) 454, 625, 1086, 1570, 1663
LweI GCATC 7 cut(s) 481, 752, 763, 856, 1150, 1157, 1599
MaeI CTAG 4 cut(s) 930, 1478, 1511, 1781
MaeII ACGT 3 cut(s) 210, 954, 1536
MaeIII GTNAC 4 cut(s) 76, 613, 1194, 1222
MalI GATC 7 cut(s) 411, 969, 983, 1294, 1332, 1505, 1707
MboI GATC 7 cut(s) 409, 967, 981, 1292, 1330, 1503, 1705
MboII GAAGA 1 cut(s) 1542
MhlI GDGCHC 3 cut(s) 631, 736, 1255
MluCI AATT 6 cut(s) 60, 392, 403, 424, 597, 1468
MlyI GAGTC 1 cut(s) 1758
MmeI TCCRAC 3 cut(s) 494, 574, 1704
MroI TCCGGA 1 cut(s) 304
MseI TTAA 5 cut(s) 45, 540, 789, 1074, 1137
MslI CAYNNNNRTG 4 cut(s) 771, 1158, 1409, 1736
MspA1I CMGCKG 1 cut(s) 1424
MspI CCGG 2 cut(s) 305, 651
MspR9I CCNGG 1 cut(s) 1632
MvaI CCWGG 1 cut(s) 1632
MwoI GCNNNNNNNGC 7 cut(s) 115, 560, 635, 647, 833, 1169, 1414
NcoI CCATGG 1 cut(s) 985
NdeII GATC 7 cut(s) 409, 967, 981, 1292, 1330, 1503, 1705
NlaIV GGNNCC 2 cut(s) 263, 1320
NmeAIII GCCGAG 1 cut(s) 825
NmuCI GTSAC 1 cut(s) 613
NsbI TGCGCA 2 cut(s) 471, 951
NspI RCATGY 3 cut(s) 1024, 1408, 1735
PagI TCATGA 1 cut(s) 1602
PceI AGGCCT 2 cut(s) 338, 1263
PciI ACATGT 1 cut(s) 1020
PcsI WCGNNNNNNNCGW 1 cut(s) 672
PfeI GAWTC 2 cut(s) 1459, 1514
PkrI GCNGC 5 cut(s) 469, 640, 1101, 1585, 1678
PleI GAGTC 1 cut(s) 1757
PpsI GAGTC 1 cut(s) 1757
Ppu21I YACGTR 3 cut(s) 211, 955, 1537
PpuMI RGGWCCY 1 cut(s) 261
PscI ACATGT 1 cut(s) 1020
PshBI ATTAAT 1 cut(s) 1137
Psp5II RGGWCCY 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 1630
PspFI CCCAGC 2 cut(s) 1103, 1367
PspGI CCWGG 1 cut(s) 1630
PspN4I GGNNCC 2 cut(s) 263, 1320
PspPI GGNCC 3 cut(s) 86, 261, 307
PspPPI RGGWCCY 1 cut(s) 261
PvuII CAGCTG 1 cut(s) 1424
RsaI GTAC 8 cut(s) 189, 458, 493, 749, 936, 1011, 1052, 1373
RsaNI GTAC 8 cut(s) 188, 457, 492, 748, 935, 1010, 1051, 1372
RseI CAYNNNNRTG 4 cut(s) 771, 1158, 1409, 1736
SaqAI TTAA 5 cut(s) 45, 540, 789, 1074, 1137
SatI GCNGC 5 cut(s) 468, 639, 1100, 1584, 1677
Sau3AI GATC 7 cut(s) 409, 967, 981, 1292, 1330, 1503, 1705
Sau96I GGNCC 3 cut(s) 86, 261, 307
ScaI AGTACT 1 cut(s) 493
SchI GAGTC 1 cut(s) 1758
ScrFI CCNGG 1 cut(s) 1632
SduI GDGCHC 3 cut(s) 631, 736, 1255
SfaNI GCATC 7 cut(s) 481, 752, 763, 856, 1150, 1157, 1599
SfcI CTRYAG 1 cut(s) 1419
SinI GGWCC 2 cut(s) 261, 307
SmiMI CAYNNNNRTG 4 cut(s) 771, 1158, 1409, 1736
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 6 cut(s) 60, 392, 403, 424, 597, 1468
SseBI AGGCCT 2 cut(s) 338, 1263
SsiI CCGC 1 cut(s) 670
SspMI CTAG 4 cut(s) 930, 1478, 1511, 1781
StuI AGGCCT 2 cut(s) 338, 1263
StyD4I CCNGG 1 cut(s) 1630
StyI CCWWGG 2 cut(s) 82, 985
TaaI ACNGT 3 cut(s) 388, 619, 1526
TaiI ACGT 3 cut(s) 213, 957, 1539
TaqI TCGA 2 cut(s) 606, 778
TasI AATT 6 cut(s) 60, 392, 403, 424, 597, 1468
TatI WGTACW 5 cut(s) 187, 491, 747, 934, 1009
TfiI GAWTC 2 cut(s) 1459, 1514
Tru1I TTAA 5 cut(s) 45, 540, 789, 1074, 1137
Tru9I TTAA 5 cut(s) 45, 540, 789, 1074, 1137
TscAI CASTG 2 cut(s) 876, 1531
TseFI GTSAC 1 cut(s) 613
TseI GCWGC 5 cut(s) 467, 638, 1099, 1583, 1676
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 7 cut(s) 581, 668, 767, 1219, 1233, 1313, 1619
TspGWI ACGGA 1 cut(s) 1204
TspRI CASTG 2 cut(s) 876, 1531
VpaK11BI GGWCC 2 cut(s) 261, 307
VspI ATTAAT 1 cut(s) 1137
XapI RAATTY 5 cut(s) 60, 392, 403, 424, 1468
XceI RCATGY 3 cut(s) 1024, 1408, 1735
XcmI CCANNNNNNNNNTGG 1 cut(s) 1638
XspI CTAG 4 cut(s) 930, 1478, 1511, 1781
ZrmI AGTACT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.