Pentatricopeptide repeat domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G50270 |
| fragaria_vesca | FvH4_4g13480 |
| malus_domestica | MD04G1013900.v1.1 |
| prunus_persica | Prupe.1G160900_v2.0.a1 |
| pyrus_communis | pycom04g01080 |
| rosa_chinensis | RchiOBHm_Chr4g0414091 |
| rosa_laevigata | RLG00000008178 |
| rosa_multiflora | Rmu_sc0003264.1_g000012 Rmu_sc0006428.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00358020 |
| rosa_rugosa | Rorug04G0125300 |
| rosa_samantha | Rh4AG184000 Rh4BG183500 Rh4CG195900 Rh4DG179400 |
| rosa_wichuraiana | Rw4G015660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 179 |
| AfaI | GTAC | 1 cut(s) | 26 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 110 |
| AluBI | AGCT | 1 cut(s) | 168 |
| AluI | AGCT | 1 cut(s) | 168 |
| Alw26I | GTCTC | 1 cut(s) | 43 |
| AoxI | GGCC | 1 cut(s) | 51 |
| ApeKI | GCWGC | 1 cut(s) | 17 |
| AspS9I | GGNCC | 2 cut(s) | 51, 116 |
| AsuC2I | CCSGG | 1 cut(s) | 163 |
| AsuHPI | GGTGA | 2 cut(s) | 151, 177 |
| AvaII | GGWCC | 1 cut(s) | 116 |
| BbvI | GCAGC | 1 cut(s) | 29 |
| BccI | CCATC | 1 cut(s) | 127 |
| BcnI | CCSGG | 1 cut(s) | 163 |
| BcoDI | GTCTC | 1 cut(s) | 43 |
| BfaI | CTAG | 1 cut(s) | 137 |
| BfmI | CTRYAG | 1 cut(s) | 147 |
| BisI | GCNGC | 1 cut(s) | 18 |
| BlsI | GCNGC | 1 cut(s) | 19 |
| Bme1390I | CCNGG | 1 cut(s) | 163 |
| Bme18I | GGWCC | 1 cut(s) | 116 |
| BmgT120I | GGNCC | 2 cut(s) | 51, 116 |
| BmiI | GGNNCC | 2 cut(s) | 52, 102 |
| BmrFI | CCNGG | 1 cut(s) | 163 |
| BpuMI | CCSGG | 1 cut(s) | 163 |
| BsaAI | YACGTR | 1 cut(s) | 71 |
| BsaJI | CCNNGG | 1 cut(s) | 12 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 157, 187 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 110 |
| BseDI | CCNNGG | 1 cut(s) | 12 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 110 |
| BseMII | CTCAG | 1 cut(s) | 54 |
| BseXI | GCAGC | 1 cut(s) | 29 |
| BsgI | GTGCAG | 1 cut(s) | 108 |
| BshFI | GGCC | 1 cut(s) | 53 |
| BsiSI | CCGG | 1 cut(s) | 162 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 110 |
| BsmAI | GTCTC | 1 cut(s) | 43 |
| BsnI | GGCC | 1 cut(s) | 53 |
| BspANI | GGCC | 1 cut(s) | 53 |
| BspCNI | CTCAG | 1 cut(s) | 53 |
| BspLI | GGNNCC | 2 cut(s) | 52, 102 |
| BssECI | CCNNGG | 1 cut(s) | 12 |
| BstBAI | YACGTR | 1 cut(s) | 71 |
| BstDEI | CTNAG | 2 cut(s) | 29, 40 |
| BstDSI | CCRYGG | 1 cut(s) | 12 |
| BstMAI | GTCTC | 1 cut(s) | 43 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 17 |
| BstSCI | CCNGG | 1 cut(s) | 161 |
| BstSFI | CTRYAG | 1 cut(s) | 147 |
| BstSNI | TACGTA | 1 cut(s) | 71 |
| BstV1I | GCAGC | 1 cut(s) | 29 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 113 |
| BsuRI | GGCC | 1 cut(s) | 53 |
| BtgI | CCRYGG | 1 cut(s) | 12 |
| Cfr13I | GGNCC | 2 cut(s) | 51, 116 |
| Csp6I | GTAC | 1 cut(s) | 25 |
| CviAII | CATG | 4 cut(s) | 55, 64, 82, 189 |
| CviJI | RGCY | 7 cut(s) | 11, 20, 53, 80, 101, 140, 168 |
| CviKI_1 | RGCY | 7 cut(s) | 11, 20, 53, 80, 101, 140, 168 |
| CviQI | GTAC | 1 cut(s) | 25 |
| DdeI | CTNAG | 2 cut(s) | 29, 40 |
| Eco105I | TACGTA | 1 cut(s) | 71 |
| Eco47I | GGWCC | 1 cut(s) | 116 |
| FaeI | CATG | 4 cut(s) | 58, 67, 85, 192 |
| FaiI | YATR | 5 cut(s) | 56, 65, 83, 149, 190 |
| FatI | CATG | 4 cut(s) | 54, 63, 81, 188 |
| FblI | GTMKAC | 1 cut(s) | 179 |
| Fnu4HI | GCNGC | 1 cut(s) | 18 |
| Fsp4HI | GCNGC | 1 cut(s) | 18 |
| FspBI | CTAG | 1 cut(s) | 137 |
| GluI | GCNGC | 1 cut(s) | 18 |
| HaeIII | GGCC | 1 cut(s) | 53 |
| HapII | CCGG | 1 cut(s) | 162 |
| Hin1II | CATG | 4 cut(s) | 58, 67, 85, 192 |
| HpaII | CCGG | 1 cut(s) | 162 |
| HphI | GGTGA | 2 cut(s) | 151, 177 |
| Hpy166II | GTNNAC | 3 cut(s) | 74, 116, 180 |
| Hpy188I | TCNGA | 1 cut(s) | 43 |
| Hpy8I | GTNNAC | 3 cut(s) | 74, 116, 180 |
| HpyAV | CCTTC | 1 cut(s) | 41 |
| HpyCH4IV | ACGT | 1 cut(s) | 70 |
| HpyCH4V | TGCA | 1 cut(s) | 125 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 17 |
| HpyF3I | CTNAG | 2 cut(s) | 29, 40 |
| HpySE526I | ACGT | 1 cut(s) | 70 |
| Hsp92II | CATG | 4 cut(s) | 58, 67, 85, 192 |
| LmnI | GCTCC | 2 cut(s) | 106, 165 |
| LpnPI | CCDG | 1 cut(s) | 175 |
| Lsp1109I | GCAGC | 1 cut(s) | 29 |
| MaeI | CTAG | 1 cut(s) | 137 |
| MaeII | ACGT | 1 cut(s) | 70 |
| MaeIII | GTNAC | 1 cut(s) | 66 |
| MboII | GAAGA | 1 cut(s) | 56 |
| MslI | CAYNNNNRTG | 1 cut(s) | 187 |
| MspI | CCGG | 1 cut(s) | 162 |
| MspR9I | CCNGG | 1 cut(s) | 163 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 17 |
| NciI | CCSGG | 1 cut(s) | 163 |
| NlaIII | CATG | 4 cut(s) | 58, 67, 85, 192 |
| NlaIV | GGNNCC | 2 cut(s) | 52, 102 |
| PkrI | GCNGC | 1 cut(s) | 19 |
| Ppu21I | YACGTR | 1 cut(s) | 71 |
| PspN4I | GGNNCC | 2 cut(s) | 52, 102 |
| PspPI | GGNCC | 2 cut(s) | 51, 116 |
| RsaI | GTAC | 1 cut(s) | 26 |
| RsaNI | GTAC | 1 cut(s) | 25 |
| RseI | CAYNNNNRTG | 1 cut(s) | 187 |
| SatI | GCNGC | 1 cut(s) | 18 |
| Sau96I | GGNCC | 2 cut(s) | 51, 116 |
| ScrFI | CCNGG | 1 cut(s) | 163 |
| SetI | ASST | 3 cut(s) | 30, 73, 170 |
| SfcI | CTRYAG | 1 cut(s) | 147 |
| SinI | GGWCC | 1 cut(s) | 116 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 187 |
| SnaBI | TACGTA | 1 cut(s) | 71 |
| SspMI | CTAG | 1 cut(s) | 137 |
| StyD4I | CCNGG | 1 cut(s) | 161 |
| TaiI | ACGT | 1 cut(s) | 73 |
| TseI | GCWGC | 1 cut(s) | 17 |
| TspDTI | ATGAA | 1 cut(s) | 98 |
| VpaK11BI | GGWCC | 1 cut(s) | 116 |
| XmiI | GTMKAC | 1 cut(s) | 179 |
| XspI | CTAG | 1 cut(s) | 137 |