AT1G50300

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
18628555 .. 18632039
3485 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50300.1

Sequence Viewer

Length: 1119 bp
ATGGCTGGATATCCTACTAATGGATCAGTCTACGTTTCAAATCTCCCCTTAGGAACTGACGAGAATATGTTGGCTGACTATTTTGGGACCATTGGGTTGCTTAAGAGAGACAAACGAACTGGTACTCCTAAGGTATGGCTGTACCGGGATAAAGAAACTGATGAGCCCAAGGGAGATGCTACTGTTACCTATGAGGATCCGCATGCTGCTTTGGCTGCTGTTGAATGGTTCAATAACAAAGATTTTCATGGAAACACCATTGGAGTTTTTATGGCCGAGTCGAAGAATAAAAATGCTGGTGATGCAGTTGAGTTTGTTGAATTCGATGGAGGTGCTGAGGAAACAAATGGAGGTGCTGGAAGGGGGAGGGGTCAGGCTGATTCTTCGGCAAAGCCATGGCAGCAAGATGGTGACTGGATGTGCCCTAATACAAGTTGTACAAATGTGAATTTTGCATTCCGTGGGGTTTGTAACCGCTGTGGAACTGCTAGACCAGCTGGTGCATCTGGTGGCAGCATGGGTGCTGGTCGTGGAAGGGGTCGAGGTGGAGGCGCTGATGGTGGGGCCCCGGGGAAGCAGCCCAGTGGTGCTCCTACTGGTCTCTTTGGTCCAAATGATTGGGCTTGTCCAATGTGTGGCAATGTCAACTGGGCGAAACGTCTAAAATGTAATATCTGCAACACCAATAAACCTGGTCAGAATGAAGGTGGTGTGAGGGGAGGCCGTGGTGGTGGTTACAAGGAATTAGATGAACAAGAATTAGAGGAAACGAAGAGACGCAGGCGTGAGGCTGAAGAAGATGATGGTGAAATGTATGATGAGTTTGGGAATCTAAAGAAGAAGTACCGTGTTAAAACAAACCAAGCTGACACCAGACCTGCTGTTGCTGCTGGTCGTGCTGGGTGGGAAGTCGAGGAACTAGGTATTGATAAAGATGGAAGAGAGAGAAGCAGAGACAGGCAAAGAGACCGTGGTAGAGATCATCACTACGATAAGGATAGACGCAGAAGCAGAAGCCGAGAGAGGGAAAGAGGCAAGGAGCGTGACTATGACTATGACCATGATCGGGACAGAGACAGAGACTACGGTCGCGAACGTGGAAGCAGGTACCGTAACTGA

Protein Analysis

372

Amino Acids

41.28

Weight (kDa)

8.03

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 10 - 87 2.9e-09 RNA recognition motif
Zn_ribbon_RanBP PF00641 136 - 165 8.6e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 886, 1095
Acc65I GGTACC 1 cut(s) 1107
AccB1I GGYRCC 1 cut(s) 1107
AccB7I CCANNNNNTGG 1 cut(s) 635
AccI GTMKAC 1 cut(s) 30
AccII CGCG 1 cut(s) 1092
AciI CCGC 2 cut(s) 200, 475
AclWI GGATC 3 cut(s) 31, 191, 204
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 2 cut(s) 320, 448
AcuI CTGAAG 1 cut(s) 813
AfaI GTAC 5 cut(s) 124, 143, 439, 845, 1109
AfiI CCNNNNNNNGG 4 cut(s) 20, 635, 1024, 1066
AflII CTTAAG 1 cut(s) 101
AgsI TTSAA 4 cut(s) 39, 224, 232, 320
AjnI CCWGG 1 cut(s) 691
AloI GAACNNNNNNTCC 2 cut(s) 109, 141
AluBI AGCT 2 cut(s) 497, 866
AluI AGCT 2 cut(s) 497, 866
Alw21I GWGCWC 1 cut(s) 592
Alw26I GTCTC 7 cut(s) 102, 605, 769, 948, 960, 1068, 1074
AlwI GGATC 3 cut(s) 31, 191, 204
Ama87I CYCGRG 1 cut(s) 568
AoxI GGCC 3 cut(s) 273, 564, 721
ApaI GGGCCC 1 cut(s) 568
ApeKI GCWGC 6 cut(s) 206, 215, 400, 513, 577, 887
ApoI RAATTY 2 cut(s) 320, 448
Asp718I GGTACC 1 cut(s) 1107
AspLEI GCGC 1 cut(s) 554
AspS9I GGNCC 4 cut(s) 87, 564, 565, 608
AsuC2I CCSGG 3 cut(s) 146, 569, 570
AsuHPI GGTGA 3 cut(s) 311, 422, 818
AvaI CYCGRG 1 cut(s) 568
AvaII GGWCC 2 cut(s) 87, 608
AxyI CCTNAGG 2 cut(s) 49, 129
BaeGI GKGCMC 2 cut(s) 425, 568
BamHI GGATCC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 1107
BanII GRGCYC 2 cut(s) 168, 568
Bbv12I GWGCWC 1 cut(s) 592
BbvCI CCTCAGC 1 cut(s) 336
BbvI GCAGC 6 cut(s) 193, 202, 412, 525, 589, 874
BccI CCATC 5 cut(s) 320, 401, 551, 797, 929
BceAI ACGGC 1 cut(s) 708
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BciT130I CCWGG 1 cut(s) 693
BcnI CCSGG 3 cut(s) 146, 569, 570
BcoDI GTCTC 7 cut(s) 102, 605, 769, 948, 960, 1068, 1074
BfaI CTAG 2 cut(s) 489, 920
BfoI RGCGCY 1 cut(s) 555
BfrI CTTAAG 1 cut(s) 101
BfuAI ACCTGC 2 cut(s) 886, 1095
BisI GCNGC 6 cut(s) 207, 216, 401, 514, 578, 888
BlsI GCNGC 6 cut(s) 208, 217, 402, 515, 579, 889
Bme1390I CCNGG 4 cut(s) 146, 569, 570, 693
Bme18I GGWCC 2 cut(s) 87, 608
BmeT110I CYCGRG 1 cut(s) 568
BmgT120I GGNCC 4 cut(s) 87, 564, 565, 608
BmiI GGNNCC 6 cut(s) 88, 198, 565, 566, 567, 1109
BmrFI CCNGG 4 cut(s) 146, 569, 570, 693
BmrI ACTGGG 2 cut(s) 576, 658
BmsI GCATC 3 cut(s) 166, 292, 512
BmuI ACTGGG 2 cut(s) 576, 658
BoxI GACNNNNGTC 1 cut(s) 1086
Bpu10I CCTNAGC 1 cut(s) 336
BpuMI CCSGG 3 cut(s) 146, 569, 570
BsaI GGTCTC 2 cut(s) 605, 960
BsaJI CCNNGG 8 cut(s) 168, 395, 460, 567, 568, 569, 724, 970
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 635, 1024, 1066
Bse1I ACTGG 5 cut(s) 124, 419, 582, 601, 653
Bse21I CCTNAGG 2 cut(s) 49, 129
Bse3DI GCAATG 1 cut(s) 646
BseBI CCWGG 1 cut(s) 693
BseDI CCNNGG 8 cut(s) 168, 395, 460, 567, 568, 569, 724, 970
BseGI GGATG 1 cut(s) 423
BseLI CCNNNNNNNGG 4 cut(s) 20, 635, 1024, 1066
BseMI GCAATG 1 cut(s) 646
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 5 cut(s) 124, 419, 582, 601, 653
BseSI GKGCMC 2 cut(s) 425, 568
BseXI GCAGC 6 cut(s) 193, 202, 412, 525, 589, 874
BseYI CCCAGC 1 cut(s) 899
Bsh1236I CGCG 1 cut(s) 1092
Bsh1285I CGRYCG 1 cut(s) 1090
BshFI GGCC 3 cut(s) 275, 566, 723
BshNI GGYRCC 1 cut(s) 1107
BsiEI CGRYCG 1 cut(s) 1090
BsiHKAI GWGCWC 1 cut(s) 592
BsiHKCI CYCGRG 1 cut(s) 568
BsiSI CCGG 2 cut(s) 145, 569
BslFI GGGAC 2 cut(s) 100, 1082
BslI CCNNNNNNNGG 4 cut(s) 20, 635, 1024, 1066
BsmAI GTCTC 7 cut(s) 102, 605, 769, 948, 960, 1068, 1074
BsmBI CGTCTC 1 cut(s) 769
BsmFI GGGAC 2 cut(s) 100, 1082
BsmI GAATGC 1 cut(s) 455
BsnI GGCC 3 cut(s) 275, 566, 723
Bso31I GGTCTC 2 cut(s) 605, 960
BsoBI CYCGRG 1 cut(s) 568
Bsp120I GGGCCC 1 cut(s) 564
Bsp1286I GDGCHC 4 cut(s) 168, 425, 568, 592
Bsp1407I TGTACA 1 cut(s) 437
Bsp143I GATC 4 cut(s) 23, 196, 979, 1063
Bsp19I CCATGG 1 cut(s) 395
Bsp68I TCGCGA 1 cut(s) 1092
BspACI CCGC 2 cut(s) 200, 475
BspANI GGCC 3 cut(s) 275, 566, 723
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 1 cut(s) 1092
BspLI GGNNCC 6 cut(s) 88, 198, 565, 566, 567, 1109
BspMI ACCTGC 2 cut(s) 886, 1095
BspPI GGATC 3 cut(s) 31, 191, 204
BspT107I GGYRCC 1 cut(s) 1107
BspTI CTTAAG 1 cut(s) 101
BspTNI GGTCTC 2 cut(s) 605, 960
BsrDI GCAATG 1 cut(s) 646
BsrGI TGTACA 1 cut(s) 437
BsrI ACTGG 5 cut(s) 124, 419, 582, 601, 653
BssECI CCNNGG 8 cut(s) 168, 395, 460, 567, 568, 569, 724, 970
BssMI GATC 4 cut(s) 23, 196, 979, 1063
BssT1I CCWWGG 2 cut(s) 168, 395
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 5 cut(s) 184, 848, 971, 1088, 1112
Bst6I CTCTTC 2 cut(s) 767, 934
BstAFI CTTAAG 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 437
BstC8I GCNNGC 2 cut(s) 204, 782
BstDEI CTNAG 3 cut(s) 49, 129, 336
BstDSI CCRYGG 4 cut(s) 395, 460, 724, 970
BstF5I GGATG 1 cut(s) 423
BstFNI CGCG 1 cut(s) 1092
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 1 cut(s) 554
BstKTI GATC 4 cut(s) 26, 199, 982, 1066
BstMAI GTCTC 7 cut(s) 102, 605, 769, 948, 960, 1068, 1074
BstMBI GATC 4 cut(s) 23, 196, 979, 1063
BstMCI CGRYCG 1 cut(s) 1090
BstMWI GCNNNNNNNGC 7 cut(s) 212, 215, 302, 400, 494, 887, 896
BstNI CCWGG 1 cut(s) 693
BstNSI RCATGY 1 cut(s) 206
BstPAI GACNNNNGTC 1 cut(s) 1086
BstSCI CCNGG 4 cut(s) 144, 567, 568, 691
BstSLI GKGCMC 2 cut(s) 425, 568
BstUI CGCG 1 cut(s) 1092
BstV1I GCAGC 6 cut(s) 193, 202, 412, 525, 589, 874
BstX2I RGATCY 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 618
BstYI RGATCY 1 cut(s) 196
Bsu36I CCTNAGG 2 cut(s) 49, 129
BsuRI GGCC 3 cut(s) 275, 566, 723
BtgI CCRYGG 4 cut(s) 395, 460, 724, 970
BtsCI GGATG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 589
BtuMI TCGCGA 1 cut(s) 1092
BveI ACCTGC 2 cut(s) 886, 1095
Cac8I GCNNGC 2 cut(s) 204, 782
CfoI GCGC 1 cut(s) 554
Cfr13I GGNCC 4 cut(s) 87, 564, 565, 608
Cfr9I CCCGGG 1 cut(s) 568
CseI GACGC 2 cut(s) 786, 1011
CsiI ACCWGGT 1 cut(s) 691
Csp6I GTAC 5 cut(s) 123, 142, 438, 844, 1108
CviAII CATG 5 cut(s) 203, 248, 396, 517, 1061
CviQI GTAC 5 cut(s) 123, 142, 438, 844, 1108
DdeI CTNAG 3 cut(s) 49, 129, 336
DpnI GATC 4 cut(s) 25, 198, 981, 1065
DpnII GATC 4 cut(s) 23, 196, 979, 1063
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 2 cut(s) 767, 934
EarI CTCTTC 2 cut(s) 767, 934
Eco130I CCWWGG 2 cut(s) 168, 395
Eco24I GRGCYC 2 cut(s) 168, 568
Eco31I GGTCTC 2 cut(s) 605, 960
Eco32I GATATC 1 cut(s) 11
Eco47I GGWCC 2 cut(s) 87, 608
Eco57I CTGAAG 1 cut(s) 813
Eco81I CCTNAGG 2 cut(s) 49, 129
Eco88I CYCGRG 1 cut(s) 568
EcoO109I RGGNCCY 2 cut(s) 564, 565
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 691
EcoRV GATATC 1 cut(s) 11
EcoT14I CCWWGG 2 cut(s) 168, 395
EcoT38I GRGCYC 2 cut(s) 168, 568
ErhI CCWWGG 2 cut(s) 168, 395
Esp3I CGTCTC 1 cut(s) 769
FaeI CATG 5 cut(s) 206, 251, 399, 520, 1064
FaqI GGGAC 2 cut(s) 100, 1082
FatI CATG 5 cut(s) 202, 247, 395, 516, 1060
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 6 cut(s) 207, 216, 401, 514, 578, 888
FokI GGATG 1 cut(s) 430
FriOI GRGCYC 2 cut(s) 168, 568
Fsp4HI GCNGC 6 cut(s) 207, 216, 401, 514, 578, 888
FspBI CTAG 2 cut(s) 489, 920
GlaI GCGC 1 cut(s) 553
GluI GCNGC 6 cut(s) 207, 216, 401, 514, 578, 888
GsaI CCCAGC 1 cut(s) 903
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 3 cut(s) 275, 566, 723
HapII CCGG 2 cut(s) 145, 569
HgaI GACGC 2 cut(s) 786, 1011
HhaI GCGC 1 cut(s) 554
Hin1II CATG 5 cut(s) 206, 251, 399, 520, 1064
Hin6I GCGC 1 cut(s) 552
HinP1I GCGC 1 cut(s) 552
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HinfI GANTC 3 cut(s) 278, 380, 829
HpaII CCGG 2 cut(s) 145, 569
HphI GGTGA 3 cut(s) 311, 422, 818
Hpy166II GTNNAC 2 cut(s) 31, 646
Hpy188I TCNGA 1 cut(s) 699
Hpy188III TCNNGA 2 cut(s) 1067, 1091
Hpy8I GTNNAC 2 cut(s) 31, 646
HpyAV CCTTC 3 cut(s) 354, 528, 698
HpyCH4III ACNGT 5 cut(s) 184, 848, 971, 1088, 1112
HpyCH4IV ACGT 3 cut(s) 33, 658, 1096
HpyCH4V TGCA 4 cut(s) 305, 455, 503, 678
HpyF10VI GCNNNNNNNGC 7 cut(s) 212, 215, 302, 400, 494, 887, 896
HpyF3I CTNAG 3 cut(s) 49, 129, 336
HpySE526I ACGT 3 cut(s) 33, 658, 1096
Hsp92II CATG 5 cut(s) 206, 251, 399, 520, 1064
HspAI GCGC 1 cut(s) 552
KpnI GGTACC 1 cut(s) 1111
Kzo9I GATC 4 cut(s) 23, 196, 979, 1063
LmnI GCTCC 2 cut(s) 595, 1039
Lsp1109I GCAGC 6 cut(s) 193, 202, 412, 525, 589, 874
LweI GCATC 3 cut(s) 166, 292, 512
MabI ACCWGGT 1 cut(s) 691
MaeI CTAG 2 cut(s) 489, 920
MaeII ACGT 3 cut(s) 33, 658, 1096
MaeIII GTNAC 6 cut(s) 184, 410, 470, 734, 1043, 1112
MalI GATC 4 cut(s) 25, 198, 981, 1065
MboI GATC 4 cut(s) 23, 196, 979, 1063
MboII GAAGA 7 cut(s) 295, 375, 784, 806, 809, 850, 951
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 4 cut(s) 168, 425, 568, 592
MluCI AATT 4 cut(s) 320, 448, 743, 758
MlyI GAGTC 1 cut(s) 287
MseI TTAA 2 cut(s) 102, 852
MspA1I CMGCKG 2 cut(s) 477, 497
MspCI CTTAAG 1 cut(s) 101
MspI CCGG 2 cut(s) 145, 569
MspR9I CCNGG 4 cut(s) 146, 569, 570, 693
Mva1269I GAATGC 1 cut(s) 455
MvaI CCWGG 1 cut(s) 693
MvnI CGCG 1 cut(s) 1092
MwoI GCNNNNNNNGC 7 cut(s) 212, 215, 302, 400, 494, 887, 896
NciI CCSGG 3 cut(s) 146, 569, 570
NcoI CCATGG 1 cut(s) 395
NdeII GATC 4 cut(s) 23, 196, 979, 1063
NlaIII CATG 5 cut(s) 206, 251, 399, 520, 1064
NlaIV GGNNCC 6 cut(s) 88, 198, 565, 566, 567, 1109
NmeAIII GCCGAG 2 cut(s) 301, 1043
NmuCI GTSAC 2 cut(s) 410, 1043
NruI TCGCGA 1 cut(s) 1092
NspI RCATGY 1 cut(s) 206
PaeI GCATGC 1 cut(s) 206
PctI GAATGC 1 cut(s) 455
PfeI GAWTC 2 cut(s) 380, 829
PflMI CCANNNNNTGG 1 cut(s) 635
PkrI GCNGC 6 cut(s) 208, 217, 402, 515, 579, 889
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PshAI GACNNNNGTC 1 cut(s) 1086
Psp6I CCWGG 1 cut(s) 691
PspFI CCCAGC 1 cut(s) 899
PspGI CCWGG 1 cut(s) 691
PspN4I GGNNCC 6 cut(s) 88, 198, 565, 566, 567, 1109
PspOMI GGGCCC 1 cut(s) 564
PspPI GGNCC 4 cut(s) 87, 564, 565, 608
PsuI RGATCY 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 497
RruI TCGCGA 1 cut(s) 1092
RsaI GTAC 5 cut(s) 124, 143, 439, 845, 1109
RsaNI GTAC 5 cut(s) 123, 142, 438, 844, 1108
SaqAI TTAA 2 cut(s) 102, 852
SatI GCNGC 6 cut(s) 207, 216, 401, 514, 578, 888
Sau3AI GATC 4 cut(s) 23, 196, 979, 1063
Sau96I GGNCC 4 cut(s) 87, 564, 565, 608
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 4 cut(s) 146, 569, 570, 693
SduI GDGCHC 4 cut(s) 168, 425, 568, 592
SexAI ACCWGGT 1 cut(s) 691
SfaNI GCATC 3 cut(s) 166, 292, 512
SinI GGWCC 2 cut(s) 87, 608
SmaI CCCGGG 1 cut(s) 570
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SphI GCATGC 1 cut(s) 206
Sse9I AATT 4 cut(s) 320, 448, 743, 758
SsiI CCGC 2 cut(s) 200, 475
SspMI CTAG 2 cut(s) 489, 920
StyD4I CCNGG 4 cut(s) 144, 567, 568, 691
StyI CCWWGG 2 cut(s) 168, 395
TaaI ACNGT 5 cut(s) 184, 848, 971, 1088, 1112
TaiI ACGT 3 cut(s) 36, 661, 1099
TaqI TCGA 4 cut(s) 281, 324, 541, 912
TasI AATT 4 cut(s) 320, 448, 743, 758
TatI WGTACW 1 cut(s) 437
TfiI GAWTC 2 cut(s) 380, 829
Tru1I TTAA 2 cut(s) 102, 852
Tru9I TTAA 2 cut(s) 102, 852
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 2 cut(s) 410, 1043
TseI GCWGC 6 cut(s) 206, 215, 400, 513, 577, 887
Tsp45I GTSAC 2 cut(s) 410, 1043
TspDTI ATGAA 3 cut(s) 236, 717, 765
TspGWI ACGGA 1 cut(s) 449
TspMI CCCGGG 1 cut(s) 568
TspRI CASTG 1 cut(s) 589
Van91I CCANNNNNTGG 1 cut(s) 635
Vha464I CTTAAG 1 cut(s) 101
VpaK11BI GGWCC 2 cut(s) 87, 608
XapI RAATTY 2 cut(s) 320, 448
XceI RCATGY 1 cut(s) 206
XmaI CCCGGG 1 cut(s) 568
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 2 cut(s) 489, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.