pycom13g00660

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
421775 .. 424732
2958 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g00660.2

Sequence Viewer

Length: 1239 bp
ATGGCAACCTATACAGGAAAAGGAGCCCCCTCAAATGGGTCAGTTTATGTTTGCAATCTGCCTGAGGGGACTGATGAAAATATGTTGGCTGAACATTTTGGCACCATTGGGCTGTTAAAGAAAGACAAGCGAACGGGTCGACCGAAAATTTGGCTGTACCGAGACAAATTGACCGACGAACCTAAGGGAGATGCTACTGTAACGTATGAAGATCCACATGCTGCATCAGCCGCCGTTGAATGGTTTAACGACAAGGAATTCCATGGTAATACCATTGGGGTTTTTATAGCCGAGTCCAAAAGCAAAGATGATCAGACTCATAACTCTGCTGTTGATCCAAGTTTTGGCGGTGATCTTGATGGATCGGAGGAAGCTACTCAGGATACGAATGGGGGTGGTGGCGGTGGTCGAGGTCGAGGTGATGCTACTGGGAAAGCATGGCAACAAGAAGGAGACTGGACGTGTCCAAATACAAGCTGTGCCAATGTGAATTTTGCATTTCGTGGTGTGTGCAATCGCTGTGGAAGTGCTCGACCAACCGGAGCTTCTGGTGGCGCAGGGGGTGGTGGTCGTGGCAGGGGTCGTGGCGTTGATGCTGGGGGCCGTGGTGGTCCTGTTGGTGCTCCTACAGGTGGACTCTTTGGTCCAAATGACTGGCCGTGTCCAATGTGTGCCAACATCAATTGGGCAAAGCGTACAAAATGCAATATATGCAACACTAATAAACCGGGTCACAATGAAGGGGGTGTAAGGGGGGGACGTGGTGGTGGTTACAAGGAACTTGATGAAGAAGAATTAGAGGAAATCAAGCGACGTAGGCGGGAGGCAGAAGAAGATGATGGAGAGATGTATGATGAGTTTGGCAACCTCAAGAAAAAATTTCGCTCTAAAACACAGCCAGCTGAAACTGGACGAGCTCTTCCAGGTGCCGGACGTGCTGGATGGGAAGTGGAGGAAATAGGGCAGGTGACAGAGAGAGAAATAGAGAGAGGGGAAGGGAACACGATGATAGACCGAGCAGCAAGAACAGAGACAGAGATGATGGTTATAGGCATCGTAGTCGAAGTAGAGAAAGGGAAAGGGATAGGGGGAGAGATAGGCCTCGAGACTATGATTATGATCGAGAAAAAGAATACGGGAGGGACAGGGATCGAGACCGGGACCGGCACAGGCACCGTTATTGAAGGTTATGGGACAGTTTCCCAGTTTTGGTTCTCCGTGGAGCTGCATTTGTGTTGA

Protein Analysis

413

Amino Acids

43.82

Weight (kDa)

5.19

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 955
AasI GACNNNNNNGTC 1 cut(s) 642
Acc36I ACCTGC 1 cut(s) 955
AccB1I GGYRCC 3 cut(s) 101, 926, 1172
AccB7I CCANNNNNTGG 1 cut(s) 344
AccI GTMKAC 1 cut(s) 139
AciI CCGC 4 cut(s) 231, 348, 402, 820
AclWI GGATC 4 cut(s) 206, 329, 370, 1157
AcoI YGGCCR 1 cut(s) 656
AcsI RAATTY 4 cut(s) 147, 257, 490, 878
AfaI GTAC 2 cut(s) 158, 697
AfiI CCNNNNNNNGG 7 cut(s) 35, 36, 240, 344, 632, 929, 1209
AflIII ACRYGT 1 cut(s) 461
AgsI TTSAA 2 cut(s) 239, 1184
AjiI CACGTC 3 cut(s) 462, 761, 935
AjnI CCWGG 1 cut(s) 922
AjuI GAANNNNNNNTTGG 2 cut(s) 529, 561
AluBI AGCT 6 cut(s) 374, 477, 545, 902, 917, 1225
AluI AGCT 6 cut(s) 374, 477, 545, 902, 917, 1225
Alw21I GWGCWC 3 cut(s) 532, 625, 919
Alw26I GTCTC 5 cut(s) 156, 447, 1025, 1100, 1148
AlwI GGATC 4 cut(s) 206, 329, 370, 1157
Ama87I CYCGRG 1 cut(s) 1103
AoxI GGCC 3 cut(s) 601, 656, 1099
ApeKI GCWGC 3 cut(s) 221, 1019, 1225
ApoI RAATTY 4 cut(s) 147, 257, 490, 878
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
AspLEI GCGC 1 cut(s) 557
AspS9I GGNCC 4 cut(s) 601, 611, 644, 1161
AsuC2I CCSGG 2 cut(s) 729, 1159
AsuHPI GGTGA 3 cut(s) 362, 431, 979
AvaI CYCGRG 1 cut(s) 1103
AvaII GGWCC 3 cut(s) 611, 644, 1161
AxyI CCTNAGG 2 cut(s) 63, 183
BanI GGYRCC 3 cut(s) 101, 926, 1172
BanII GRGCYC 2 cut(s) 28, 919
Bbv12I GWGCWC 3 cut(s) 532, 625, 919
BbvI GCAGC 3 cut(s) 208, 1031, 1212
BccI CCATC 4 cut(s) 353, 833, 936, 1036
BceAI ACGGC 3 cut(s) 218, 588, 643
BcgI CGANNNNNNTGC 2 cut(s) 1042, 1076
BciT130I CCWGG 1 cut(s) 924
BciVI GTATCC 1 cut(s) 376
BclI TGATCA 1 cut(s) 310
BcnI CCSGG 2 cut(s) 729, 1159
BcoDI GTCTC 5 cut(s) 156, 447, 1025, 1100, 1148
BfmI CTRYAG 1 cut(s) 627
BfuAI ACCTGC 1 cut(s) 955
BfuI GTATCC 1 cut(s) 376
BisI GCNGC 4 cut(s) 222, 231, 1020, 1226
BlsI GCNGC 4 cut(s) 223, 232, 1021, 1227
Bme1390I CCNGG 3 cut(s) 729, 924, 1159
Bme18I GGWCC 3 cut(s) 611, 644, 1161
BmeT110I CYCGRG 1 cut(s) 1103
BmgBI CACGTC 3 cut(s) 462, 761, 935
BmgT120I GGNCC 4 cut(s) 601, 611, 644, 1161
BmiI GGNNCC 6 cut(s) 25, 103, 602, 928, 1162, 1174
BmrFI CCNGG 3 cut(s) 729, 924, 1159
BmrI ACTGGG 2 cut(s) 438, 1198
BmsI GCATC 5 cut(s) 181, 233, 412, 583, 1062
BmuI ACTGGG 2 cut(s) 438, 1198
BpuEI CTTGAG 1 cut(s) 854
BpuMI CCSGG 2 cut(s) 729, 1159
BsaBI GATNNNNATC 1 cut(s) 1118
BsaI GGTCTC 1 cut(s) 1148
BsaJI CCNNGG 3 cut(s) 262, 604, 1218
BsaWI WCCGGW 1 cut(s) 539
Bsc4I CCNNNNNNNGG 7 cut(s) 35, 36, 240, 344, 632, 929, 1209
Bse118I RCCGGY 1 cut(s) 1163
Bse1I ACTGG 5 cut(s) 433, 461, 659, 913, 1204
Bse21I CCTNAGG 2 cut(s) 63, 183
Bse8I GATNNNNATC 1 cut(s) 1118
BseBI CCWGG 1 cut(s) 924
BseDI CCNNGG 3 cut(s) 262, 604, 1218
BseGI GGATG 1 cut(s) 947
BseJI GATNNNNATC 1 cut(s) 1118
BseLI CCNNNNNNNGG 7 cut(s) 35, 36, 240, 344, 632, 929, 1209
BseMII CTCAG 2 cut(s) 54, 392
BseNI ACTGG 5 cut(s) 433, 461, 659, 913, 1204
BseXI GCAGC 3 cut(s) 208, 1031, 1212
BseYI CCCAGC 1 cut(s) 596
Bsh1285I CGRYCG 1 cut(s) 143
BshFI GGCC 3 cut(s) 603, 658, 1101
BshNI GGYRCC 3 cut(s) 101, 926, 1172
BsiEI CGRYCG 1 cut(s) 143
BsiHKAI GWGCWC 3 cut(s) 532, 625, 919
BsiHKCI CYCGRG 1 cut(s) 1103
BsiSI CCGG 5 cut(s) 540, 728, 930, 1158, 1164
BslFI GGGAC 5 cut(s) 82, 771, 1156, 1174, 1207
BslI CCNNNNNNNGG 7 cut(s) 35, 36, 240, 344, 632, 929, 1209
BsmAI GTCTC 5 cut(s) 156, 447, 1025, 1100, 1148
BsmFI GGGAC 5 cut(s) 82, 771, 1156, 1174, 1207
BsnI GGCC 3 cut(s) 603, 658, 1101
Bso31I GGTCTC 1 cut(s) 1148
BsoBI CYCGRG 1 cut(s) 1103
Bsp1286I GDGCHC 4 cut(s) 28, 532, 625, 919
Bsp143I GATC 7 cut(s) 211, 310, 334, 352, 362, 1119, 1149
Bsp19I CCATGG 1 cut(s) 262
BspACI CCGC 4 cut(s) 231, 348, 402, 820
BspANI GGCC 3 cut(s) 603, 658, 1101
BspCNI CTCAG 2 cut(s) 55, 391
BspLI GGNNCC 6 cut(s) 25, 103, 602, 928, 1162, 1174
BspMI ACCTGC 1 cut(s) 955
BspPI GGATC 4 cut(s) 206, 329, 370, 1157
BspQI GCTCTTC 1 cut(s) 924
BspT107I GGYRCC 3 cut(s) 101, 926, 1172
BspTNI GGTCTC 1 cut(s) 1148
BsrFI RCCGGY 1 cut(s) 1163
BsrI ACTGG 5 cut(s) 433, 461, 659, 913, 1204
BssAI RCCGGY 1 cut(s) 1163
BssECI CCNNGG 3 cut(s) 262, 604, 1218
BssMI GATC 7 cut(s) 211, 310, 334, 352, 362, 1119, 1149
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 924
Bst4CI ACNGT 3 cut(s) 199, 1177, 1198
Bst6I CTCTTC 1 cut(s) 924
BstAPI GCANNNNNTGC 1 cut(s) 711
BstC8I GCNNGC 1 cut(s) 900
BstDEI CTNAG 3 cut(s) 63, 183, 378
BstDSI CCRYGG 3 cut(s) 262, 604, 1218
BstF5I GGATG 1 cut(s) 947
BstHHI GCGC 1 cut(s) 557
BstKTI GATC 7 cut(s) 214, 313, 337, 355, 365, 1122, 1152
BstMAI GTCTC 5 cut(s) 156, 447, 1025, 1100, 1148
BstMBI GATC 7 cut(s) 211, 310, 334, 352, 362, 1119, 1149
BstMCI CGRYCG 1 cut(s) 143
BstMWI GCNNNNNNNGC 5 cut(s) 227, 230, 711, 817, 935
BstNI CCWGG 1 cut(s) 924
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 3 cut(s) 727, 922, 1157
BstSFI CTRYAG 1 cut(s) 627
BstV1I GCAGC 3 cut(s) 208, 1031, 1212
BstX2I RGATCY 1 cut(s) 211
BstXI CCANNNNNNTGG 1 cut(s) 654
BstYI RGATCY 1 cut(s) 211
Bsu36I CCTNAGG 2 cut(s) 63, 183
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 3 cut(s) 603, 658, 1101
BtgI CCRYGG 3 cut(s) 262, 604, 1218
BtrI CACGTC 3 cut(s) 462, 761, 935
BtsCI GGATG 1 cut(s) 947
BveI ACCTGC 1 cut(s) 955
Cac8I GCNNGC 1 cut(s) 900
CfoI GCGC 1 cut(s) 557
Cfr10I RCCGGY 1 cut(s) 1163
Cfr13I GGNCC 4 cut(s) 601, 611, 644, 1161
Csp6I GTAC 2 cut(s) 157, 696
CspCI CAANNNNNGTGG 2 cut(s) 502, 537
CviAII CATG 3 cut(s) 218, 263, 438
CviQI GTAC 2 cut(s) 157, 696
DdeI CTNAG 3 cut(s) 63, 183, 378
DpnI GATC 7 cut(s) 213, 312, 336, 354, 364, 1121, 1151
DpnII GATC 7 cut(s) 211, 310, 334, 352, 362, 1119, 1149
DrdI GACNNNNNNGTC 1 cut(s) 642
DseDI GACNNNNNNGTC 1 cut(s) 642
EaeI YGGCCR 1 cut(s) 656
Eam1104I CTCTTC 1 cut(s) 924
EarI CTCTTC 1 cut(s) 924
Ecl136II GAGCTC 1 cut(s) 917
Eco130I CCWWGG 1 cut(s) 262
Eco147I AGGCCT 1 cut(s) 1101
Eco24I GRGCYC 2 cut(s) 28, 919
Eco31I GGTCTC 1 cut(s) 1148
Eco47I GGWCC 3 cut(s) 611, 644, 1161
Eco53kI GAGCTC 1 cut(s) 917
Eco81I CCTNAGG 2 cut(s) 63, 183
Eco88I CYCGRG 1 cut(s) 1103
EcoICRI GAGCTC 1 cut(s) 917
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 922
EcoT14I CCWWGG 1 cut(s) 262
EcoT38I GRGCYC 2 cut(s) 28, 919
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 3 cut(s) 221, 266, 441
FaqI GGGAC 5 cut(s) 82, 771, 1156, 1174, 1207
FatI CATG 3 cut(s) 217, 262, 437
FauI CCCGC 1 cut(s) 813
FbaI TGATCA 1 cut(s) 310
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 4 cut(s) 222, 231, 1020, 1226
FokI GGATG 1 cut(s) 954
FriOI GRGCYC 2 cut(s) 28, 919
Fsp4HI GCNGC 4 cut(s) 222, 231, 1020, 1226
GlaI GCGC 1 cut(s) 556
GluI GCNGC 4 cut(s) 222, 231, 1020, 1226
GsaI CCCAGC 1 cut(s) 600
HaeIII GGCC 3 cut(s) 603, 658, 1101
HapII CCGG 5 cut(s) 540, 728, 930, 1158, 1164
HhaI GCGC 1 cut(s) 557
Hin1II CATG 3 cut(s) 221, 266, 441
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
HinfI GANTC 3 cut(s) 293, 316, 636
HpaII CCGG 5 cut(s) 540, 728, 930, 1158, 1164
HphI GGTGA 3 cut(s) 362, 431, 979
Hpy166II GTNNAC 2 cut(s) 140, 635
Hpy188I TCNGA 2 cut(s) 315, 367
Hpy188III TCNNGA 6 cut(s) 356, 380, 871, 1105, 1123, 1153
Hpy8I GTNNAC 2 cut(s) 140, 635
Hpy99I CGWCG 2 cut(s) 179, 816
HpyAV CCTTC 4 cut(s) 443, 734, 989, 1178
HpyCH4III ACNGT 3 cut(s) 199, 1177, 1198
HpyCH4IV ACGT 5 cut(s) 203, 461, 760, 814, 934
HpyCH4V TGCA 7 cut(s) 54, 224, 497, 513, 705, 714, 1228
HpyF10VI GCNNNNNNNGC 5 cut(s) 227, 230, 711, 817, 935
HpyF3I CTNAG 3 cut(s) 63, 183, 378
HpySE526I ACGT 5 cut(s) 203, 461, 760, 814, 934
Hsp92II CATG 3 cut(s) 221, 266, 441
HspAI GCGC 1 cut(s) 555
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 7 cut(s) 211, 310, 334, 352, 362, 1119, 1149
LguI GCTCTTC 1 cut(s) 924
LmnI GCTCC 4 cut(s) 23, 542, 628, 1222
Lsp1109I GCAGC 3 cut(s) 208, 1031, 1212
LweI GCATC 5 cut(s) 181, 233, 412, 583, 1062
MaeII ACGT 5 cut(s) 203, 461, 760, 814, 934
MaeIII GTNAC 4 cut(s) 199, 731, 770, 967
MalI GATC 7 cut(s) 213, 312, 336, 354, 364, 1121, 1151
MboI GATC 7 cut(s) 211, 310, 334, 352, 362, 1119, 1149
MboII GAAGA 6 cut(s) 221, 800, 803, 842, 845, 911
MfeI CAATTG 1 cut(s) 682
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 4 cut(s) 28, 532, 625, 919
MluCI AATT 7 cut(s) 147, 167, 257, 490, 682, 794, 878
MlyI GAGTC 3 cut(s) 302, 310, 630
MseI TTAA 2 cut(s) 116, 246
MspA1I CMGCKG 1 cut(s) 902
MspI CCGG 5 cut(s) 540, 728, 930, 1158, 1164
MspR9I CCNGG 3 cut(s) 729, 924, 1159
MunI CAATTG 1 cut(s) 682
MvaI CCWGG 1 cut(s) 924
MwoI GCNNNNNNNGC 5 cut(s) 227, 230, 711, 817, 935
NciI CCSGG 2 cut(s) 729, 1159
NcoI CCATGG 1 cut(s) 262
NdeII GATC 7 cut(s) 211, 310, 334, 352, 362, 1119, 1149
NlaIII CATG 3 cut(s) 221, 266, 441
NlaIV GGNNCC 6 cut(s) 25, 103, 602, 928, 1162, 1174
NmeAIII GCCGAG 1 cut(s) 316
NmuCI GTSAC 2 cut(s) 731, 967
NspI RCATGY 1 cut(s) 221
PaeR7I CTCGAG 1 cut(s) 1103
PaqCI CACCTGC 1 cut(s) 955
PceI AGGCCT 1 cut(s) 1101
PciSI GCTCTTC 1 cut(s) 924
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PflMI CCANNNNNTGG 1 cut(s) 344
PkrI GCNGC 4 cut(s) 223, 232, 1021, 1227
PleI GAGTC 3 cut(s) 301, 310, 630
PpsI GAGTC 3 cut(s) 301, 310, 630
Psp124BI GAGCTC 1 cut(s) 919
Psp6I CCWGG 1 cut(s) 922
PspFI CCCAGC 1 cut(s) 596
PspGI CCWGG 1 cut(s) 922
PspN4I GGNNCC 6 cut(s) 25, 103, 602, 928, 1162, 1174
PspPI GGNCC 4 cut(s) 601, 611, 644, 1161
PsuI RGATCY 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 2 cut(s) 158, 697
RsaNI GTAC 2 cut(s) 157, 696
SacI GAGCTC 1 cut(s) 919
SalI GTCGAC 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 924
SaqAI TTAA 2 cut(s) 116, 246
SatI GCNGC 4 cut(s) 222, 231, 1020, 1226
Sau3AI GATC 7 cut(s) 211, 310, 334, 352, 362, 1119, 1149
Sau96I GGNCC 4 cut(s) 601, 611, 644, 1161
SchI GAGTC 3 cut(s) 302, 310, 630
ScrFI CCNGG 3 cut(s) 729, 924, 1159
SduI GDGCHC 4 cut(s) 28, 532, 625, 919
SfaNI GCATC 5 cut(s) 181, 233, 412, 583, 1062
SfcI CTRYAG 1 cut(s) 627
Sfr274I CTCGAG 1 cut(s) 1103
SinI GGWCC 3 cut(s) 611, 644, 1161
SlaI CTCGAG 1 cut(s) 1103
SmlI CTYRAG 2 cut(s) 869, 1103
SmoI CTYRAG 2 cut(s) 869, 1103
Sse9I AATT 7 cut(s) 147, 167, 257, 490, 682, 794, 878
SseBI AGGCCT 1 cut(s) 1101
SsiI CCGC 4 cut(s) 231, 348, 402, 820
SstI GAGCTC 1 cut(s) 919
StuI AGGCCT 1 cut(s) 1101
StyD4I CCNGG 3 cut(s) 727, 922, 1157
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 3 cut(s) 199, 1177, 1198
TaiI ACGT 5 cut(s) 206, 464, 763, 817, 937
TaqI TCGA 8 cut(s) 139, 409, 415, 532, 1062, 1104, 1122, 1152
TaqII GACCGA 3 cut(s) 157, 188, 1029
TasI AATT 7 cut(s) 147, 167, 257, 490, 682, 794, 878
TauI GCSGC 1 cut(s) 233
Tru1I TTAA 2 cut(s) 116, 246
Tru9I TTAA 2 cut(s) 116, 246
TseFI GTSAC 2 cut(s) 731, 967
TseI GCWGC 3 cut(s) 221, 1019, 1225
Tsp45I GTSAC 2 cut(s) 731, 967
TspDTI ATGAA 4 cut(s) 90, 222, 753, 801
TspGWI ACGGA 1 cut(s) 1207
Van91I CCANNNNNTGG 1 cut(s) 344
VpaK11BI GGWCC 3 cut(s) 611, 644, 1161
XapI RAATTY 4 cut(s) 147, 257, 490, 878
XceI RCATGY 1 cut(s) 221
XhoI CTCGAG 1 cut(s) 1103
XmiI GTMKAC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.