Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0007884

Physical Location & Seq

Genomic Coordinates Reverse (-)

63727292 .. 63731462

Gene Structure 4171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G036960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCAACAAGATGGAGACTGGACGTGTCCGAATACAAGGTCTGTGATGTGAGATTGGTGAGCAGCTCTTTCTTGCACTTTCGTTTGGCATTTGCATTTATTAATGTAATATTGTTCAGTAAATGGCTTCTCATGCCCTGTTCTCCTAGCAGTTGTGGCAATGTCAACTTTGCATTCCGTGGTGTGTGCAACCGCTGTGGAAGTGCTCGACCAACTGGTGCTTCTGGGGGTGGGGCAGGGGGTGGTGGTCGCGGCAGGGGCCGTGGTGTTGATTCCGGGGGCCGTGGTGGTCCTGTTGGTGCTCCTACAGGGGGACTCTTTGGTCCAAATGATTGGCCTTGTCCAATGTGTGGCAACATTAACTGGGCAAAGCGTACAAAATGCAATATATGCAACACAAATAAACCTGGGCACAATGAGGGTGGTGTAAGAGGAGGGCGTGGTGGTGGTTACAAAGAACTTGATGAAGAAGAACTGGAGGAAATCAAGCGACGTCGGCGAGAGGCCGAAGAAGATGATGGAGAGATGTATGATGAGTTTGGCAACCTGAAGAAAAAATTTCGAGCTAAAACATCACAGCAAGCTGAGACTGGACGGGCTCTTCCAGGTGCTGGGCGTGCTGGATGGGAGGTTGAGGAAATAGGTGTTGTTGATAGAGATGGCAGAGAAAGAAATAGAGATAGAGGAAGGGAACGTGATGATAGAGCAGGCAGCAAGAACAGGGAAAGAGATGATAGGGATAGGCGTCGCAGTCGGAGCAGAGAAAGGGATAGGGGGAGAGATCGACCTCGAGATTATGATCGGGAGAAAGAATATGGGCGGGAGAGGGACCGGGATAGGGATCGGGGCAGGCACCGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1901796 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

RRM_1 zf-RanBP

Protein Analysis

287

Amino Acids

32.39

Weight (kDa)

9.77

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50300 AT1G50300
fragaria_vesca	FvH4_4g36691 FvH4_4g36691
malus_domestica	MD13G1008100.v1.1 MD16G1000100.v1.1
prunus_persica	Prupe.1G345000_v2.0.a1 Prupe.1G345000_v2.0.a1 Prupe.1G345000_v2.0.a1 Prupe.1G345000_v2.0.a1 Prupe.1G345000_v2.0.a1 Prupe.1G345000_v2.0.a1 Prupe.1G345000_v2.0.a1 Prupe.1G345000_v2.0.a1
pyrus_communis	pycom13g00660 pycom16g00530
rosa_chinensis	RchiOBHm_Chr4g0446411
rosa_laevigata	RLG00000005663
rosa_multiflora	Rmu_sc0037453.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386850
rosa_samantha	Rh4AG432700 Rh4CG459200 Rh4DG440600
rosa_wichuraiana	Rw4G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	321
AatII	GACGTC	1 cut(s)	496
AccB1I	GGYRCC	1 cut(s)	852
AccB7I	CCANNNNNTGG	2 cut(s)	350, 611
AccII	CGCG	1 cut(s)	252
AciI	CCGC	3 cut(s)	193, 252, 820
AclWI	GGATC	1 cut(s)	849
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	2 cut(s)	493, 745
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	4 cut(s)	311, 350, 611, 838
AflIII	ACRYGT	1 cut(s)	24
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	2 cut(s)	406, 604
AjuI	GAANNNNNNNTTGG	2 cut(s)	205, 237
AluBI	AGCT	3 cut(s)	66, 566, 584
AluI	AGCT	3 cut(s)	66, 566, 584
Alw21I	GWGCWC	2 cut(s)	208, 304
Alw26I	GTCTC	2 cut(s)	10, 581
AlwI	GGATC	1 cut(s)	849
AlwNI	CAGNNNCTG	1 cut(s)	611
Ama87I	CYCGRG	1 cut(s)	789
AoxI	GGCC	4 cut(s)	259, 280, 335, 504
ApeKI	GCWGC	2 cut(s)	63, 711
ApoI	RAATTY	1 cut(s)	557
ArsI	GACNNNNNNTTYG	2 cut(s)	24, 56
AseI	ATTAAT	1 cut(s)	102
AspS9I	GGNCC	5 cut(s)	259, 280, 290, 323, 829
AsuC2I	CCSGG	2 cut(s)	277, 833
AsuHPI	GGTGA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	789
AvaII	GGWCC	3 cut(s)	290, 323, 829
BaeGI	GKGCMC	1 cut(s)	414
BanI	GGYRCC	1 cut(s)	852
BanII	GRGCYC	1 cut(s)	601
Bbv12I	GWGCWC	2 cut(s)	208, 304
BbvI	GCAGC	2 cut(s)	75, 723
BccI	CCATC	4 cut(s)	6, 512, 618, 653
BceAI	ACGGC	2 cut(s)	246, 267
BciT130I	CCWGG	2 cut(s)	408, 606
BcnI	CCSGG	2 cut(s)	277, 833
BcoDI	GTCTC	2 cut(s)	10, 581
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	306
BisI	GCNGC	3 cut(s)	64, 253, 712
BlsI	GCNGC	3 cut(s)	65, 254, 713
Bme1390I	CCNGG	4 cut(s)	277, 408, 606, 833
Bme18I	GGWCC	3 cut(s)	290, 323, 829
BmeT110I	CYCGRG	1 cut(s)	789
BmgBI	CACGTC	1 cut(s)	25
BmgT120I	GGNCC	5 cut(s)	259, 280, 290, 323, 829
BmiI	GGNNCC	4 cut(s)	260, 281, 830, 854
BmrFI	CCNGG	4 cut(s)	277, 408, 606, 833
BmrI	ACTGGG	1 cut(s)	373
BmuI	ACTGGG	1 cut(s)	373
BpmI	CTGGAG	1 cut(s)	497
BpuMI	CCSGG	2 cut(s)	277, 833
BsaBI	GATNNNNATC	2 cut(s)	798, 840
BsaHI	GRCGYC	2 cut(s)	493, 745
BsaJI	CCNNGG	5 cut(s)	178, 262, 276, 283, 407
Bsc4I	CCNNNNNNNGG	4 cut(s)	311, 350, 611, 838
Bse1I	ACTGG	5 cut(s)	24, 220, 368, 480, 595
Bse3DI	GCAATG	1 cut(s)	166
Bse8I	GATNNNNATC	2 cut(s)	798, 840
BseBI	CCWGG	2 cut(s)	408, 606
BseDI	CCNNGG	5 cut(s)	178, 262, 276, 283, 407
BseGI	GGATG	1 cut(s)	629
BseJI	GATNNNNATC	2 cut(s)	798, 840
BseLI	CCNNNNNNNGG	4 cut(s)	311, 350, 611, 838
BseMI	GCAATG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	5 cut(s)	24, 220, 368, 480, 595
BseRI	GAGGAG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	2 cut(s)	75, 723
BseYI	CCCAGC	1 cut(s)	611
Bsh1236I	CGCG	1 cut(s)	252
BshFI	GGCC	4 cut(s)	261, 282, 337, 506
BshNI	GGYRCC	1 cut(s)	852
BsiHKAI	GWGCWC	2 cut(s)	208, 304
BsiHKCI	CYCGRG	1 cut(s)	789
BsiSI	CCGG	2 cut(s)	276, 832
BslFI	GGGAC	2 cut(s)	327, 842
BslI	CCNNNNNNNGG	4 cut(s)	311, 350, 611, 838
BsmAI	GTCTC	2 cut(s)	10, 581
BsmFI	GGGAC	2 cut(s)	327, 842
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	4 cut(s)	261, 282, 337, 506
BsoBI	CYCGRG	1 cut(s)	789
Bsp1286I	GDGCHC	4 cut(s)	208, 304, 414, 601
Bsp143I	GATC	3 cut(s)	781, 799, 841
BspACI	CCGC	3 cut(s)	193, 252, 820
BspANI	GGCC	4 cut(s)	261, 282, 337, 506
BspCNI	CTCAG	1 cut(s)	577
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	4 cut(s)	260, 281, 830, 854
BspPI	GGATC	1 cut(s)	849
BspQI	GCTCTTC	1 cut(s)	606
BspT107I	GGYRCC	1 cut(s)	852
BsrDI	GCAATG	1 cut(s)	166
BsrI	ACTGG	5 cut(s)	24, 220, 368, 480, 595
BssECI	CCNNGG	5 cut(s)	178, 262, 276, 283, 407
BssMI	GATC	3 cut(s)	781, 799, 841
BssNI	GRCGYC	2 cut(s)	493, 745
Bst2UI	CCWGG	2 cut(s)	408, 606
Bst4CI	ACNGT	1 cut(s)	857
Bst6I	CTCTTC	1 cut(s)	606
BstACI	GRCGYC	2 cut(s)	493, 745
BstAPI	GCANNNNNTGC	1 cut(s)	390
BstC8I	GCNNGC	4 cut(s)	582, 618, 709, 851
BstDEI	CTNAG	1 cut(s)	585
BstDSI	CCRYGG	3 cut(s)	178, 262, 283
BstF5I	GGATG	1 cut(s)	629
BstFNI	CGCG	1 cut(s)	252
BstKTI	GATC	3 cut(s)	784, 802, 844
BstMAI	GTCTC	2 cut(s)	10, 581
BstMBI	GATC	3 cut(s)	781, 799, 841
BstMWI	GCNNNNNNNGC	7 cut(s)	133, 156, 258, 390, 496, 617, 756
BstNI	CCWGG	2 cut(s)	408, 606
BstSCI	CCNGG	4 cut(s)	275, 406, 604, 831
BstSFI	CTRYAG	1 cut(s)	306
BstSLI	GKGCMC	1 cut(s)	414
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	75, 723
BstXI	CCANNNNNNTGG	1 cut(s)	333
BsuRI	GGCC	4 cut(s)	261, 282, 337, 506
BtgI	CCRYGG	3 cut(s)	178, 262, 283
BtrI	CACGTC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	629
Cac8I	GCNNGC	4 cut(s)	582, 618, 709, 851
CaiI	CAGNNNCTG	1 cut(s)	611
Cfr13I	GGNCC	5 cut(s)	259, 280, 290, 323, 829
CseI	GACGC	1 cut(s)	734
Csp6I	GTAC	1 cut(s)	375
CspCI	CAANNNNNGTGG	4 cut(s)	178, 213, 403, 438
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	9 cut(s)	66, 127, 261, 282, 337, 506, 566, 584, 599
CviKI_1	RGCY	9 cut(s)	66, 127, 261, 282, 337, 506, 566, 584, 599
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	1 cut(s)	585
DpnI	GATC	3 cut(s)	783, 801, 843
DpnII	GATC	3 cut(s)	781, 799, 841
DrdI	GACNNNNNNGTC	1 cut(s)	321
DseDI	GACNNNNNNGTC	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Eco24I	GRGCYC	1 cut(s)	601
Eco47I	GGWCC	3 cut(s)	290, 323, 829
Eco57I	CTGAAG	1 cut(s)	569
Eco88I	CYCGRG	1 cut(s)	789
EcoRII	CCWGG	2 cut(s)	406, 604
EcoT38I	GRGCYC	1 cut(s)	601
FaeI	CATG	1 cut(s)	136
FaiI	YATR	6 cut(s)	134, 389, 391, 531, 798, 816
FaqI	GGGAC	2 cut(s)	327, 842
FatI	CATG	1 cut(s)	132
FauI	CCCGC	1 cut(s)	813
Fnu4HI	GCNGC	3 cut(s)	64, 253, 712
FokI	GGATG	1 cut(s)	636
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	3 cut(s)	64, 253, 712
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	3 cut(s)	64, 253, 712
GsaI	CCCAGC	1 cut(s)	615
GsuI	CTGGAG	1 cut(s)	497
HaeIII	GGCC	4 cut(s)	261, 282, 337, 506
HapII	CCGG	2 cut(s)	276, 832
HgaI	GACGC	1 cut(s)	734
Hin1I	GRCGYC	2 cut(s)	493, 745
Hin1II	CATG	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	2 cut(s)	272, 315
HpaII	CCGG	2 cut(s)	276, 832
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	31, 756
Hpy188III	TCNNGA	2 cut(s)	791, 803
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	3 cut(s)	495, 498, 750
HpyAV	CCTTC	1 cut(s)	681
HpyCH4III	ACNGT	1 cut(s)	857
HpyCH4IV	ACGT	3 cut(s)	24, 493, 694
HpyCH4V	TGCA	6 cut(s)	76, 95, 173, 189, 384, 393
HpyF10VI	GCNNNNNNNGC	7 cut(s)	133, 156, 258, 390, 496, 617, 756
HpyF3I	CTNAG	1 cut(s)	585
HpySE526I	ACGT	3 cut(s)	24, 493, 694
Hsp92I	GRCGYC	2 cut(s)	493, 745
Hsp92II	CATG	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	781, 799, 841
LguI	GCTCTTC	1 cut(s)	606
LmnI	GCTCC	2 cut(s)	307, 756
Lsp1109I	GCAGC	2 cut(s)	75, 723
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	3 cut(s)	24, 493, 694
MaeIII	GTNAC	2 cut(s)	449, 857
MalI	GATC	3 cut(s)	783, 801, 843
MboI	GATC	3 cut(s)	781, 799, 841
MboII	GAAGA	6 cut(s)	479, 482, 521, 524, 562, 593
MhlI	GDGCHC	4 cut(s)	208, 304, 414, 601
MluCI	AATT	1 cut(s)	557
MlyI	GAGTC	1 cut(s)	309
MmeI	TCCRAC	1 cut(s)	734
MseI	TTAA	2 cut(s)	102, 360
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	2 cut(s)	276, 832
MspR9I	CCNGG	4 cut(s)	277, 408, 606, 833
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	2 cut(s)	408, 606
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	7 cut(s)	133, 156, 258, 390, 496, 617, 756
NciI	CCSGG	2 cut(s)	277, 833
NdeII	GATC	3 cut(s)	781, 799, 841
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	4 cut(s)	260, 281, 830, 854
PaeR7I	CTCGAG	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	606
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	272
PflMI	CCANNNNNTGG	2 cut(s)	350, 611
PkrI	GCNGC	3 cut(s)	65, 254, 713
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PshBI	ATTAAT	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	406, 604
PspFI	CCCAGC	1 cut(s)	611
PspGI	CCWGG	2 cut(s)	406, 604
PspN4I	GGNNCC	4 cut(s)	260, 281, 830, 854
PspPI	GGNCC	5 cut(s)	259, 280, 290, 323, 829
PstNI	CAGNNNCTG	1 cut(s)	611
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	606
SaqAI	TTAA	2 cut(s)	102, 360
SatI	GCNGC	3 cut(s)	64, 253, 712
Sau3AI	GATC	3 cut(s)	781, 799, 841
Sau96I	GGNCC	5 cut(s)	259, 280, 290, 323, 829
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	4 cut(s)	277, 408, 606, 833
SduI	GDGCHC	4 cut(s)	208, 304, 414, 601
SfcI	CTRYAG	1 cut(s)	306
Sfr274I	CTCGAG	1 cut(s)	789
SinI	GGWCC	3 cut(s)	290, 323, 829
SlaI	CTCGAG	1 cut(s)	789
SmlI	CTYRAG	1 cut(s)	789
SmoI	CTYRAG	1 cut(s)	789
Sse9I	AATT	1 cut(s)	557
SsiI	CCGC	3 cut(s)	193, 252, 820
SspI	AATATT	1 cut(s)	111
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	4 cut(s)	275, 406, 604, 831
TaaI	ACNGT	1 cut(s)	857
TaiI	ACGT	3 cut(s)	27, 496, 697
TaqI	TCGA	4 cut(s)	208, 562, 784, 790
TasI	AATT	1 cut(s)	557
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	102, 360
Tru9I	TTAA	2 cut(s)	102, 360
TseI	GCWGC	2 cut(s)	63, 711
TspDTI	ATGAA	1 cut(s)	480
TspGWI	ACGGA	1 cut(s)	167
Van91I	CCANNNNNTGG	2 cut(s)	350, 611
VpaK11BI	GGWCC	3 cut(s)	290, 323, 829
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	1 cut(s)	557
XhoI	CTCGAG	1 cut(s)	789
XspI	CTAG	1 cut(s)	147
ZraI	GACGTC	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.